Wall clock time and date at job start Mon Mar 30 2020 03:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47240 * 300.44680 * 3 2 1 5 5 C 1.52992 * 109.46792 * 180.44369 * 3 2 1 6 6 C 1.50696 * 109.47490 * 60.00350 * 5 3 2 7 7 H 1.08003 * 119.99760 * 359.97438 * 6 5 3 8 8 C 1.37872 * 120.00824 * 179.97438 * 6 5 3 9 9 N 1.31515 * 119.99390 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00449 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46870 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47363 * 120.00149 * 10 8 6 13 13 H 1.48508 * 109.46883 * 239.99862 * 10 8 6 14 14 C 1.53006 * 109.46868 * 60.44602 * 3 2 1 15 15 H 1.09001 * 110.85417 * 176.20401 * 14 3 2 16 16 C 1.54480 * 110.96791 * 52.37920 * 14 3 2 17 17 N 1.46766 * 105.47116 * 216.46349 * 16 14 3 18 18 C 1.34415 * 111.30175 * 17.01507 * 17 16 14 19 19 O 1.21283 * 124.94821 * 179.62756 * 18 17 16 20 20 C 1.51280 * 110.11493 * 359.59416 * 18 17 16 21 21 H 4.44653 * 5.63364 * 179.97438 * 4 1 2 22 22 H 1.09002 * 109.47153 * 299.99895 * 4 3 2 23 23 H 1.09001 * 109.46832 * 180.02562 * 4 3 2 24 24 H 1.09004 * 109.47261 * 60.00067 * 4 3 2 25 25 H 1.09001 * 109.47066 * 180.02562 * 5 3 2 26 26 H 1.08996 * 109.47747 * 299.99997 * 5 3 2 27 27 H 0.97010 * 119.99733 * 179.97438 * 9 8 6 28 28 H 1.08994 * 110.24595 * 335.46031 * 16 14 3 29 29 H 1.09000 * 110.24565 * 97.46357 * 16 14 3 30 30 H 0.96996 * 124.35138 * 197.04083 * 17 16 14 31 31 H 1.09001 * 110.48801 * 225.06713 * 20 18 17 32 32 H 1.09006 * 110.48854 * 102.42503 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.7301 1.2435 5 6 3.1553 1.4433 0.0112 6 6 2.6527 2.1439 1.2471 7 1 2.0317 1.6134 1.9537 8 6 2.9855 3.4622 1.4758 9 7 3.7421 4.1081 0.6156 10 14 2.3631 4.3304 3.0082 11 1 1.5380 3.3905 3.8089 12 1 3.5182 4.7909 3.8200 13 1 1.5377 5.5002 2.6136 14 6 3.1563 -0.7107 -1.2549 15 1 4.2438 -0.6649 -1.3117 16 6 2.5101 -0.1189 -2.5271 17 7 2.3074 -1.2584 -3.4296 18 6 2.3813 -2.4254 -2.7668 19 8 2.2445 -3.5203 -3.2703 20 6 2.6608 -2.1746 -1.3013 21 1 -1.0499 0.0001 0.0003 22 1 2.7928 -0.2233 2.1375 23 1 4.2464 -0.7291 1.2437 24 1 2.7935 -1.7579 1.2356 25 1 4.2453 1.4438 0.0107 26 1 2.7917 1.9639 -0.8747 27 1 3.9759 5.0358 0.7763 28 1 1.5539 0.3443 -2.2840 29 1 3.1779 0.6108 -2.9850 30 1 2.1418 -1.1795 -4.3821 31 1 3.4350 -2.8511 -0.9394 32 1 1.7493 -2.2876 -0.7143 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165756257.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:59 Heat of formation + Delta-G solvation = -18.893652 kcal Electronic energy + Delta-G solvation = -15062.133739 eV Core-core repulsion = 12601.679678 eV Total energy + Delta-G solvation = -2460.454061 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.53164 -38.87651 -36.44568 -34.52846 -32.40964 -31.27770 -28.92373 -28.40968 -25.53118 -23.27608 -22.09526 -21.45337 -18.78560 -18.12717 -17.73277 -17.28113 -16.45458 -16.01046 -15.30609 -14.98042 -14.84762 -14.36669 -14.18921 -13.93021 -13.57863 -13.01976 -12.77213 -12.72753 -12.42698 -12.20644 -12.02143 -11.94379 -11.61949 -11.28268 -11.04562 -10.68408 -10.47983 -10.46504 -10.07756 -8.12598 -6.17470 1.40621 1.43914 1.53789 1.54171 2.17048 2.20917 2.44969 2.45817 3.23266 3.41624 3.55036 3.63294 3.95086 4.15634 4.53898 4.59630 4.63922 4.74314 4.75496 4.94571 5.04041 5.14374 5.34504 5.37680 5.52509 5.59741 5.77376 5.82677 5.90371 6.00871 6.34326 6.93676 7.02426 7.23830 7.49387 8.98933 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046715 B = 0.007405 C = 0.007155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.240337 B = 3780.204010 C = 3912.183325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.155 4.155 3 C 0.061 3.939 4 C -0.126 4.126 5 C 0.042 3.958 6 C -0.514 4.514 7 H 0.056 0.944 8 C 0.005 3.995 9 N -0.930 5.930 10 Si 0.946 3.054 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.285 1.285 14 C -0.082 4.082 15 H 0.110 0.890 16 C 0.105 3.895 17 N -0.717 5.717 18 C 0.518 3.482 19 O -0.586 6.586 20 C -0.144 4.144 21 H 0.235 0.765 22 H 0.047 0.953 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.012 0.988 26 H 0.002 0.998 27 H 0.260 0.740 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.416 0.584 31 H 0.119 0.881 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 -7.864 -2.970 8.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.155 4.155 3 C 0.061 3.939 4 C -0.183 4.183 5 C 0.005 3.995 6 C -0.552 4.552 7 H 0.074 0.926 8 C -0.192 4.192 9 N -0.572 5.572 10 Si 0.772 3.228 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.211 1.211 14 C -0.101 4.101 15 H 0.128 0.872 16 C -0.019 4.019 17 N -0.371 5.371 18 C 0.306 3.694 19 O -0.468 6.468 20 C -0.183 4.183 21 H 0.252 0.748 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.031 0.969 26 H 0.020 0.980 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.255 0.745 31 H 0.137 0.863 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.066 -8.254 -3.131 9.066 hybrid contribution -0.539 1.147 0.295 1.301 sum -2.605 -7.107 -2.836 8.083 Atomic orbital electron populations 1.25361 0.96578 1.02582 1.01795 1.23149 0.94516 0.98651 0.99229 1.17830 0.84240 0.97022 0.94837 1.21747 1.01367 0.99041 0.96182 1.19053 0.95339 0.89312 0.95791 1.21560 1.30078 0.96304 1.07263 0.92565 1.25715 0.95720 0.98625 0.99187 1.70059 1.38587 1.11019 1.37489 0.85680 0.78173 0.78571 0.80342 1.19139 1.20688 1.21098 1.22209 1.01603 0.93101 0.93170 0.87208 1.22241 1.01462 0.88256 0.89915 1.46219 1.71952 1.06971 1.11918 1.21239 0.74222 0.83324 0.90598 1.90692 1.53845 1.26911 1.75344 1.22447 1.04809 0.97999 0.93069 0.74810 0.93339 0.91390 0.91459 0.96944 0.97969 0.93115 0.91352 0.88992 0.74473 0.86288 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -8.00 19.25 74.32 1.43 -6.57 16 2 C -0.16 -5.55 7.68 31.13 0.24 -5.31 16 3 C 0.06 2.13 0.32 -53.99 -0.02 2.11 16 4 C -0.13 -4.04 7.95 71.98 0.57 -3.47 16 5 C 0.04 1.91 3.88 29.84 0.12 2.03 16 6 C -0.51 -26.58 7.80 25.60 0.20 -26.38 16 7 H 0.06 2.89 6.39 -2.91 -0.02 2.88 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -53.16 13.29 21.45 0.28 -52.87 16 10 Si 0.95 42.77 29.54 68.60 2.03 44.79 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C -0.08 -2.31 2.51 -9.74 -0.02 -2.33 16 15 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 16 C 0.11 2.86 6.39 86.83 0.55 3.42 16 17 N -0.72 -18.18 6.24 -459.81 -2.87 -21.05 16 18 C 0.52 15.42 8.43 87.90 0.74 16.16 16 19 O -0.59 -21.58 18.03 -3.04 -0.05 -21.63 16 20 C -0.14 -3.73 5.18 30.59 0.16 -3.57 16 21 H 0.24 5.74 7.80 -4.42 -0.03 5.70 16 22 H 0.05 1.76 6.62 -2.39 -0.02 1.74 16 23 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.07 1.77 7.16 -2.38 -0.02 1.76 16 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.00 0.10 7.55 -2.39 -0.02 0.08 16 27 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 28 H 0.07 2.07 6.48 -2.39 -0.02 2.06 16 29 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.42 8.83 8.96 -92.71 -0.83 8.00 16 31 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.11 2.81 6.68 -2.38 -0.02 2.79 16 Total: -1.00 -64.15 269.92 4.11 -60.04 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.29 Total: 13.90 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 4.43 Total: -23.18 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -2.58 Total: -73.92 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.63 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -64.15 4.11 -60.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165756257.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.146 kcal (2) G-P(sol) polarization free energy of solvation -64.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds