Wall clock time and date at job start Mon Mar 30 2020 03:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47112 * 2 1 4 4 O 1.42894 * 109.47091 * 120.00404 * 2 1 3 5 5 C 1.35956 * 117.00163 * 83.33931 * 4 2 1 6 6 C 1.39407 * 119.82169 * 355.16224 * 5 4 2 7 7 C 1.38097 * 120.57116 * 179.97438 * 6 5 4 8 8 C 1.38717 * 120.20616 * 0.02562 * 7 6 5 9 9 N 1.38850 * 120.18611 * 179.97438 * 8 7 6 10 10 C 1.41543 * 119.63014 * 0.02562 * 8 7 6 11 11 C 1.41029 * 120.27454 * 180.02562 * 10 8 7 12 12 H 1.07999 * 119.99918 * 29.34055 * 11 10 8 13 13 C 1.39904 * 119.99923 * 209.33707 * 11 10 8 14 14 N 1.30892 * 120.00119 * 10.57892 * 13 11 10 15 15 Si 1.86805 * 119.99833 * 190.57661 * 13 11 10 16 16 H 1.48504 * 109.47000 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46902 * 120.00322 * 15 13 11 18 18 H 1.48498 * 109.47100 * 240.00520 * 15 13 11 19 19 C 1.37846 * 119.82067 * 174.89635 * 5 4 2 20 20 H 1.09006 * 109.47282 * 59.99815 * 1 2 3 21 21 H 1.08995 * 109.47305 * 299.99847 * 1 2 3 22 22 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46909 * 240.00499 * 2 1 3 24 24 H 1.09007 * 109.46931 * 60.00343 * 3 2 1 25 25 H 1.08996 * 109.47147 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47328 * 300.00094 * 3 2 1 27 27 H 1.08006 * 119.71632 * 0.02562 * 6 5 4 28 28 H 1.08005 * 119.90104 * 180.02562 * 7 6 5 29 29 H 0.96999 * 119.99618 * 359.97438 * 9 8 7 30 30 H 0.96997 * 119.99841 * 180.02562 * 9 8 7 31 31 H 0.97000 * 119.99818 * 179.97438 * 14 13 11 32 32 H 1.07997 * 120.10563 * 359.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0796 -2.0301 1.1095 6 6 1.6037 -2.7033 -0.0146 7 6 1.6709 -4.0807 -0.0892 8 6 2.2142 -4.8106 0.9578 9 7 2.2811 -6.1954 0.8826 10 6 2.6990 -4.1359 2.1038 11 6 3.2546 -4.8645 3.1759 12 1 3.7457 -5.8083 2.9904 13 6 3.1695 -4.3646 4.4798 14 7 2.4028 -3.3355 4.7375 15 14 4.1502 -5.1659 5.8531 16 1 4.9331 -6.3022 5.3043 17 1 5.0761 -4.1685 6.4471 18 1 3.2213 -5.6637 6.8993 19 6 2.6291 -2.7318 2.1611 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8933 -0.5137 -0.8900 24 1 1.6767 1.9564 0.8901 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.1795 -2.1429 -0.8346 28 1 1.2994 -4.5912 -0.9654 29 1 1.9471 -6.6551 0.0965 30 1 2.6613 -6.7032 1.6165 31 1 2.3436 -2.9891 5.6416 32 1 3.0008 -2.2058 3.0280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166391662.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:04 Heat of formation + Delta-G solvation = -29.326993 kcal Electronic energy + Delta-G solvation = -14925.386386 eV Core-core repulsion = 12464.479901 eV Total energy + Delta-G solvation = -2460.906485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.87422 -36.90893 -33.49491 -33.05898 -31.69671 -29.48260 -27.01831 -26.67896 -24.90583 -21.86771 -20.81792 -19.64650 -17.58216 -16.20117 -15.80802 -15.42657 -14.78585 -14.44686 -14.14780 -13.37872 -12.71143 -12.63941 -12.32587 -12.09699 -11.93730 -11.59531 -11.39504 -11.29145 -11.15483 -11.01052 -10.57269 -10.29953 -10.23849 -9.87251 -9.29775 -9.11676 -8.51910 -7.30529 -6.61316 -5.92859 -4.14887 2.84459 3.13945 3.17788 3.22056 3.31034 4.02482 4.29646 4.76930 5.27256 5.32028 5.40113 5.58446 5.76880 5.82121 6.02574 6.08098 6.16516 6.23361 6.39249 6.47707 6.62208 6.97818 7.06845 7.27944 7.57455 7.64074 7.72463 8.04766 8.12880 8.39635 8.76976 8.89792 8.94592 9.16394 9.22532 10.37902 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029931 B = 0.008872 C = 0.007194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.257249 B = 3155.226581 C = 3891.090082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.081 3.919 3 C -0.145 4.145 4 O -0.322 6.322 5 C 0.091 3.909 6 C -0.270 4.270 7 C -0.158 4.158 8 C 0.098 3.902 9 N -0.886 5.886 10 C 0.090 3.910 11 C -0.463 4.463 12 H 0.074 0.926 13 C 0.073 3.927 14 N -0.800 5.800 15 Si 0.907 3.093 16 H -0.263 1.263 17 H -0.274 1.274 18 H -0.277 1.277 19 C -0.162 4.162 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.376 0.624 30 H 0.391 0.609 31 H 0.277 0.723 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 2.766 -5.436 6.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.023 3.977 3 C -0.203 4.203 4 O -0.237 6.237 5 C 0.047 3.953 6 C -0.291 4.291 7 C -0.182 4.182 8 C -0.003 4.003 9 N -0.428 5.428 10 C 0.085 3.915 11 C -0.495 4.495 12 H 0.092 0.908 13 C -0.143 4.143 14 N -0.427 5.427 15 Si 0.732 3.268 16 H -0.187 1.187 17 H -0.199 1.199 18 H -0.202 1.202 19 C -0.184 4.184 20 H 0.076 0.924 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.201 0.799 30 H 0.219 0.781 31 H 0.088 0.912 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.990 3.129 -5.052 6.025 hybrid contribution 0.148 -0.751 0.419 0.873 sum -0.842 2.378 -4.633 5.275 Atomic orbital electron populations 1.22354 0.96383 1.03068 1.01587 1.22076 0.93562 0.92864 0.89162 1.21812 1.01743 0.94743 1.01955 1.86052 1.82165 1.18315 1.37174 1.18755 1.00398 0.80370 0.95780 1.20227 1.15404 0.94303 0.99152 1.19726 1.07573 0.93316 0.97626 1.17949 1.02200 0.83566 0.96544 1.41833 1.74101 1.04134 1.22731 1.16987 0.92843 0.90844 0.90786 1.19151 1.33434 1.06022 0.90850 0.90820 1.25798 0.93946 0.94586 0.99984 1.69853 1.30028 1.20927 1.21898 0.86292 0.80063 0.79879 0.80554 1.18725 1.19950 1.20233 1.20381 1.07106 0.92803 0.98084 0.92419 0.92142 0.91515 0.91742 0.92007 0.92097 0.91603 0.88665 0.89424 0.79924 0.78102 0.91241 0.85590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.78 9.13 37.16 0.34 -2.44 16 2 C 0.08 1.41 2.85 -26.73 -0.08 1.33 16 3 C -0.15 -2.03 9.56 37.16 0.36 -1.68 16 4 O -0.32 -7.33 9.80 -19.60 -0.19 -7.53 16 5 C 0.09 2.28 6.57 -39.29 -0.26 2.03 16 6 C -0.27 -6.23 8.17 -39.20 -0.32 -6.55 16 7 C -0.16 -3.64 9.87 -39.46 -0.39 -4.03 16 8 C 0.10 2.39 6.79 -83.25 -0.57 1.82 16 9 N -0.89 -17.94 8.98 32.74 0.29 -17.65 16 10 C 0.09 2.43 5.55 -106.65 -0.59 1.84 16 11 C -0.46 -12.24 8.42 -37.90 -0.32 -12.56 16 12 H 0.07 1.84 6.80 -52.49 -0.36 1.48 16 13 C 0.07 1.87 5.25 -17.33 -0.09 1.78 16 14 N -0.80 -21.53 10.89 55.55 0.61 -20.92 16 15 Si 0.91 19.11 29.57 -169.99 -5.03 14.08 16 16 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 19 C -0.16 -4.46 8.57 -38.79 -0.33 -4.79 16 20 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 22 H 0.07 1.16 6.76 -51.93 -0.35 0.81 16 23 H 0.06 1.12 6.37 -51.93 -0.33 0.79 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 1.95 5.34 -52.48 -0.28 1.67 16 28 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 29 H 0.38 6.38 8.83 -40.82 -0.36 6.02 16 30 H 0.39 7.74 7.11 -40.82 -0.29 7.45 16 31 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 32 H 0.13 3.66 6.28 -52.49 -0.33 3.33 16 LS Contribution 265.84 15.07 4.01 4.01 Total: -1.00 -29.10 265.84 -6.53 -35.64 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -3.97 Total: 15.63 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -2.25 Total: -23.26 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.90 Total: -38.57 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.19 Total: -7.53 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.10 -6.53 -35.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166391662.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.309 kcal (2) G-P(sol) polarization free energy of solvation -29.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds