Wall clock time and date at job start Mon Mar 30 2020 03:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35902 * 117.00130 * 2 1 4 4 C 1.38752 * 120.05385 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94239 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05523 * 359.75012 * 5 4 3 7 7 C 1.38239 * 120.11289 * 0.50283 * 6 5 4 8 8 C 1.50698 * 119.97458 * 179.76335 * 7 6 5 9 9 C 1.52999 * 109.47759 * 269.73028 * 8 7 6 10 10 N 1.46898 * 109.47005 * 149.72786 * 8 7 6 11 11 C 1.50704 * 109.46949 * 29.73095 * 8 7 6 12 12 H 1.07995 * 120.00416 * 243.91003 * 11 8 7 13 13 C 1.37885 * 119.99890 * 63.90970 * 11 8 7 14 14 N 1.31511 * 119.99846 * 186.20895 * 13 11 8 15 15 Si 1.86804 * 119.99771 * 6.21293 * 13 11 8 16 16 H 1.48497 * 109.47193 * 84.75150 * 15 13 11 17 17 H 1.48501 * 109.46546 * 204.74606 * 15 13 11 18 18 H 1.48491 * 109.47308 * 324.74898 * 15 13 11 19 19 C 1.38169 * 120.05255 * 359.49639 * 7 6 5 20 20 H 1.08999 * 109.47231 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.46714 * 299.99817 * 1 2 3 22 22 H 1.09004 * 109.46892 * 59.99536 * 1 2 3 23 23 H 1.08000 * 120.02813 * 0.02562 * 4 3 2 24 24 H 1.08004 * 119.97024 * 180.02562 * 5 4 3 25 25 H 1.08006 * 119.94351 * 180.27845 * 6 5 4 26 26 H 1.08999 * 109.46935 * 59.99677 * 9 8 7 27 27 H 1.08993 * 109.47220 * 180.02562 * 9 8 7 28 28 H 1.08998 * 109.46978 * 300.00042 * 9 8 7 29 29 H 1.00907 * 111.00185 * 175.78923 * 10 8 7 30 30 H 1.00905 * 111.00326 * 299.74269 * 10 8 7 31 31 H 0.96996 * 120.00077 * 179.97438 * 14 13 11 32 32 H 1.08005 * 120.02491 * 180.27096 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0063 7 6 4.0560 2.5171 0.0005 8 6 5.5608 2.5981 0.0008 9 6 6.0706 2.6259 -1.4415 10 7 6.1141 1.4266 0.6931 11 6 5.9961 3.8536 0.7117 12 1 6.5233 4.6254 0.1706 13 6 5.7213 4.0170 2.0530 14 7 5.9908 5.1600 2.6449 15 14 4.9663 2.6147 3.0292 16 1 6.0410 1.7048 3.5006 17 1 4.2342 3.1638 4.1987 18 1 4.0235 1.8609 2.1644 19 6 3.4311 1.2848 0.0000 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.2129 2.3203 0.0014 24 1 1.3340 4.5113 0.0019 25 1 3.7923 4.6380 0.0112 26 1 5.6600 3.4952 -1.9552 27 1 7.1589 2.6841 -1.4412 28 1 5.7557 1.7178 -1.9557 29 1 7.1221 1.4221 0.6474 30 1 5.7955 1.3879 1.6498 31 1 5.7972 5.2751 3.5884 32 1 4.0207 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238395294.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:40 Heat of formation + Delta-G solvation = 0.275044 kcal Electronic energy + Delta-G solvation = -15468.528458 eV Core-core repulsion = 13008.905613 eV Total energy + Delta-G solvation = -2459.622844 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.64802 -37.67114 -35.07747 -32.01409 -30.04427 -29.38094 -27.81566 -26.91490 -25.29832 -22.06135 -21.56475 -19.31797 -17.65305 -16.28136 -15.67955 -15.57107 -15.34398 -15.01589 -14.16467 -13.76723 -13.06376 -12.96318 -12.63133 -12.34405 -12.15297 -11.85341 -11.36350 -11.11238 -10.92090 -10.65129 -10.47708 -10.27736 -10.13565 -9.94190 -9.38601 -8.75142 -7.92417 -7.52407 -7.42574 -6.23745 -4.26764 2.08391 2.21380 3.18263 3.36049 3.43436 3.69304 4.29449 4.55004 5.06753 5.19722 5.29778 5.42161 5.51657 5.56607 5.64447 6.06560 6.20035 6.24659 6.39004 6.44206 6.56307 6.65307 6.88254 6.96901 7.02894 7.28362 7.46920 7.51448 7.63621 8.00568 8.07092 8.33402 8.51826 8.81792 9.38632 10.87723 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030277 B = 0.011587 C = 0.010954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.565221 B = 2415.854222 C = 2555.543276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.324 6.324 3 C 0.100 3.900 4 C -0.226 4.226 5 C -0.100 4.100 6 C -0.125 4.125 7 C -0.006 4.006 8 C 0.231 3.769 9 C -0.113 4.113 10 N -0.843 5.843 11 C -0.545 4.545 12 H 0.079 0.921 13 C 0.084 3.916 14 N -0.887 5.887 15 Si 0.844 3.156 16 H -0.281 1.281 17 H -0.299 1.299 18 H -0.226 1.226 19 C -0.137 4.137 20 H 0.091 0.909 21 H 0.049 0.951 22 H 0.050 0.950 23 H 0.114 0.886 24 H 0.114 0.886 25 H 0.137 0.863 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.335 0.665 30 H 0.314 0.686 31 H 0.266 0.734 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 -6.689 -4.724 11.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.238 6.238 3 C 0.056 3.944 4 C -0.245 4.245 5 C -0.119 4.119 6 C -0.144 4.144 7 C -0.008 4.008 8 C 0.141 3.859 9 C -0.171 4.171 10 N -0.379 5.379 11 C -0.584 4.584 12 H 0.097 0.903 13 C -0.121 4.121 14 N -0.523 5.523 15 Si 0.674 3.326 16 H -0.209 1.209 17 H -0.226 1.226 18 H -0.150 1.150 19 C -0.156 4.156 20 H 0.110 0.890 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.132 0.868 24 H 0.132 0.868 25 H 0.155 0.845 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.147 0.853 30 H 0.133 0.867 31 H 0.075 0.925 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.761 -7.196 -5.092 12.428 hybrid contribution -0.269 0.303 1.568 1.619 sum -9.029 -6.892 -3.525 11.894 Atomic orbital electron populations 1.22903 0.79679 1.02918 1.00898 1.86030 1.20341 1.27820 1.89612 1.19046 0.92528 0.83490 0.99316 1.20991 0.98840 0.92789 1.11860 1.20885 0.95033 0.96238 0.99707 1.21246 0.92455 0.99991 1.00662 1.20238 0.97072 0.91037 0.92418 1.17782 0.86681 0.88644 0.92828 1.21573 1.00162 0.99915 0.95464 1.59630 1.13870 1.45290 1.19121 1.21536 1.38397 1.03713 0.94797 0.90315 1.24970 0.94045 0.95242 0.97810 1.69899 1.47162 1.23511 1.11702 0.87603 0.81078 0.83193 0.80699 1.20894 1.22643 1.14987 1.20461 0.90260 0.99473 1.05387 0.89022 0.93238 0.93176 0.86828 0.86780 0.84529 0.93002 0.93154 0.94049 0.85276 0.86679 0.92455 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.32 -5.66 10.50 -19.43 -0.20 -5.86 16 3 C 0.10 1.95 6.69 -39.22 -0.26 1.69 16 4 C -0.23 -4.06 9.04 -39.44 -0.36 -4.42 16 5 C -0.10 -1.90 10.04 -39.61 -0.40 -2.29 16 6 C -0.13 -2.72 8.56 -39.56 -0.34 -3.06 16 7 C -0.01 -0.14 2.49 -104.65 -0.26 -0.40 16 8 C 0.23 5.25 0.77 -133.91 -0.10 5.15 16 9 C -0.11 -2.27 8.65 37.16 0.32 -1.94 16 10 N -0.84 -18.36 7.64 -1.14 -0.01 -18.37 16 11 C -0.55 -14.41 7.29 -34.44 -0.25 -14.66 16 12 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 13 C 0.08 2.32 5.14 -17.82 -0.09 2.23 16 14 N -0.89 -26.19 13.96 55.43 0.77 -25.42 16 15 Si 0.84 21.02 23.48 -169.99 -3.99 17.03 16 16 H -0.28 -6.85 7.00 56.52 0.40 -6.45 16 17 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 18 H -0.23 -5.48 4.06 56.52 0.23 -5.25 16 19 C -0.14 -2.92 7.76 -39.43 -0.31 -3.22 16 20 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 21 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 22 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 23 H 0.11 1.68 6.30 -52.49 -0.33 1.35 16 24 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 25 H 0.14 3.16 7.01 -52.48 -0.37 2.79 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.34 6.84 8.98 -39.29 -0.35 6.48 16 30 H 0.31 7.20 3.20 -39.29 -0.13 7.07 16 31 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.13 2.80 7.40 -52.48 -0.39 2.41 16 LS Contribution 255.11 15.07 3.84 3.84 Total: -1.00 -29.74 255.11 -4.85 -34.59 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -4.21 Total: 13.74 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -1.05 Total: -19.56 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: 0.76 Total: -43.78 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.20 Total: -5.86 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -3.99 Total: 17.03 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.74 -4.85 -34.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238395294.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.867 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds