Wall clock time and date at job start Mon Mar 30 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 N 1.30513 * 125.57983 * 89.72136 * 3 2 1 5 5 C 1.33875 * 108.55646 * 179.85700 * 4 3 2 6 6 C 1.34674 * 107.71927 * 0.37108 * 5 4 3 7 7 O 1.34049 * 107.31373 * 359.80549 * 6 5 4 8 8 C 1.50713 * 124.36146 * 179.88681 * 6 5 4 9 9 C 1.53378 * 108.41018 * 16.48158 * 8 6 5 10 10 C 1.53132 * 109.45225 * 310.30703 * 9 8 6 11 11 H 1.09003 * 109.46885 * 309.90634 * 10 9 8 12 12 C 1.50698 * 109.47189 * 189.91190 * 10 9 8 13 13 H 1.07996 * 119.99477 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99910 * 180.02562 * 12 10 9 15 15 N 1.31513 * 120.00001 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99851 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46849 * 89.99685 * 16 14 12 18 18 H 1.48496 * 109.46849 * 209.99828 * 16 14 12 19 19 H 1.48505 * 109.46890 * 329.99914 * 16 14 12 20 20 C 1.50804 * 128.12578 * 180.09173 * 5 4 3 21 21 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 26 26 H 1.09004 * 109.68171 * 136.21277 * 8 6 5 27 27 H 1.09002 * 109.67892 * 256.75206 * 8 6 5 28 28 H 1.08998 * 109.47473 * 70.30276 * 9 8 6 29 29 H 1.09005 * 109.47665 * 190.30947 * 9 8 6 30 30 H 0.96996 * 119.99570 * 180.02562 * 15 14 12 31 31 H 1.08998 * 109.67677 * 77.17733 * 20 5 4 32 32 H 1.09008 * 109.66851 * 316.64697 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2806 2.1385 1.0615 5 6 2.7121 3.3437 0.6695 6 6 2.7178 3.3591 -0.6771 7 8 2.2922 2.1574 -1.0916 8 6 3.1383 4.5409 -1.5125 9 6 3.9216 5.5112 -0.6195 10 6 3.1293 5.7756 0.6639 11 1 2.1045 6.0460 0.4091 12 6 3.7717 6.9052 1.4271 13 1 4.6559 7.3867 1.0363 14 6 3.2306 7.3238 2.6242 15 7 2.1537 6.7377 3.0997 16 14 4.0265 8.7245 3.5698 17 1 3.4335 10.0148 3.1355 18 1 3.7917 8.5362 5.0240 19 1 5.4871 8.7357 3.3016 20 6 3.1236 4.5109 1.5313 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.7723 4.2037 -2.3326 27 1 2.2558 5.0407 -1.9119 28 1 4.8873 5.0735 -0.3668 29 1 4.0762 6.4502 -1.1512 30 1 1.7729 7.0325 3.9417 31 1 4.1219 4.3367 1.9327 32 1 2.4140 4.6306 2.3501 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259626809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:52 Heat of formation + Delta-G solvation = -4.862742 kcal Electronic energy + Delta-G solvation = -14993.190017 eV Core-core repulsion = 12533.344382 eV Total energy + Delta-G solvation = -2459.845635 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.78307 -36.61534 -34.46217 -33.32525 -32.42431 -29.23314 -28.26880 -25.17856 -24.00051 -22.00643 -21.24933 -20.60971 -18.49708 -16.50650 -16.10636 -16.00738 -14.62926 -14.43639 -14.42211 -13.66607 -12.94534 -12.67208 -12.51594 -12.37808 -12.10651 -11.58859 -11.41798 -11.28934 -11.15762 -10.90126 -10.66441 -10.48465 -10.13421 -9.93879 -9.55320 -9.10395 -8.93218 -8.40664 -7.70349 -6.01173 -4.08290 2.04979 3.16708 3.30784 3.38051 3.39806 3.40796 4.41757 4.45507 5.03443 5.20337 5.27055 5.39092 5.53877 5.69281 5.72955 5.73584 5.79638 6.00847 6.08938 6.15845 6.41284 6.54011 6.66092 6.69139 6.88685 7.00718 7.18088 7.31210 7.70448 7.88362 8.04848 8.37321 8.46148 8.95553 9.57306 11.05566 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045930 B = 0.007268 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.481439 B = 3851.392273 C = 4281.607054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.017 4.017 3 C 0.152 3.848 4 N -0.472 5.472 5 C 0.011 3.989 6 C -0.070 4.070 7 O -0.206 6.206 8 C -0.025 4.025 9 C -0.108 4.108 10 C 0.049 3.951 11 H 0.031 0.969 12 C -0.517 4.517 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.887 5.887 16 Si 0.893 3.107 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.031 4.031 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.262 0.738 31 H 0.059 0.941 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 -9.470 -7.147 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.055 4.055 3 C -0.053 4.053 4 N -0.202 5.202 5 C -0.110 4.110 6 C -0.122 4.122 7 O -0.093 6.093 8 C -0.063 4.063 9 C -0.146 4.146 10 C 0.030 3.970 11 H 0.049 0.951 12 C -0.555 4.555 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.525 5.525 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.069 4.069 21 H 0.083 0.917 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.062 -9.697 -6.420 11.678 hybrid contribution 0.394 0.893 -0.082 0.979 sum -0.668 -8.804 -6.502 10.965 Atomic orbital electron populations 1.21779 0.93666 1.02260 1.03034 1.19872 0.96431 0.84910 1.04310 1.26196 1.03053 0.96844 0.79201 1.70183 1.15701 1.04346 1.29983 1.22494 1.01292 0.94309 0.92899 1.23348 1.06649 0.86182 0.95996 1.84145 1.64650 1.22934 1.37586 1.20233 1.00260 0.89283 0.96480 1.21761 0.98547 0.96629 0.97635 1.18771 0.95982 0.92362 0.89877 0.95135 1.21114 1.12386 1.16415 1.05620 0.92283 1.25009 0.94838 0.96630 0.97457 1.69900 1.20973 1.41177 1.20499 0.86582 0.79757 0.82466 0.79128 1.20693 1.21232 1.19874 1.20417 1.00929 0.87352 0.98166 0.91684 0.91418 0.92373 0.88199 0.89663 0.91328 0.90344 0.92651 0.91353 0.92833 0.92241 0.87806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.89 37.16 0.37 -1.28 16 2 C -0.02 -0.21 6.56 -27.88 -0.18 -0.39 16 3 C 0.15 2.80 7.60 -12.83 -0.10 2.70 16 4 N -0.47 -10.39 11.29 -7.27 -0.08 -10.47 16 5 C 0.01 0.25 6.98 -82.91 -0.58 -0.33 16 6 C -0.07 -1.45 7.24 -35.56 -0.26 -1.71 16 7 O -0.21 -3.99 10.77 6.61 0.07 -3.92 16 8 C -0.03 -0.45 6.30 -27.68 -0.17 -0.63 16 9 C -0.11 -2.19 5.15 -26.47 -0.14 -2.32 16 10 C 0.05 1.21 2.07 -91.52 -0.19 1.02 16 11 H 0.03 0.82 8.12 -51.93 -0.42 0.40 16 12 C -0.52 -13.88 8.53 -34.44 -0.29 -14.18 16 13 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 15 N -0.89 -25.39 11.46 55.43 0.64 -24.75 16 16 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.03 -0.77 5.19 -27.64 -0.14 -0.91 16 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 28 H 0.05 1.11 8.12 -51.93 -0.42 0.68 16 29 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.06 1.51 8.12 -51.93 -0.42 1.08 16 32 H 0.10 2.91 6.45 -51.92 -0.33 2.57 16 LS Contribution 267.16 15.07 4.03 4.03 Total: -1.00 -30.29 267.16 -6.67 -36.96 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -4.52 Total: -1.46 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.78 Total: -16.39 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.55 Total: -35.22 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: 0.07 Total: -3.92 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.29 -6.67 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259626809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.098 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds