Wall clock time and date at job start Mon Mar 30 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 N 1.30513 * 125.57983 * 89.72136 * 3 2 1 5 5 C 1.33875 * 108.55646 * 179.85700 * 4 3 2 6 6 C 1.34674 * 107.71927 * 0.37108 * 5 4 3 7 7 O 1.34049 * 107.31373 * 359.80549 * 6 5 4 8 8 C 1.50713 * 124.36146 * 179.88681 * 6 5 4 9 9 C 1.53378 * 108.41018 * 16.48158 * 8 6 5 10 10 C 1.53132 * 109.45225 * 310.30703 * 9 8 6 11 11 H 1.09003 * 109.46885 * 309.90634 * 10 9 8 12 12 C 1.50698 * 109.47189 * 189.91190 * 10 9 8 13 13 H 1.07996 * 119.99477 * 0.02562 * 12 10 9 14 14 C 1.37878 * 119.99910 * 180.02562 * 12 10 9 15 15 N 1.31513 * 120.00001 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99851 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46849 * 89.99685 * 16 14 12 18 18 H 1.48496 * 109.46849 * 209.99828 * 16 14 12 19 19 H 1.48505 * 109.46890 * 329.99914 * 16 14 12 20 20 C 1.50804 * 128.12578 * 180.09173 * 5 4 3 21 21 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 25 25 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 26 26 H 1.09004 * 109.68171 * 136.21277 * 8 6 5 27 27 H 1.09002 * 109.67892 * 256.75206 * 8 6 5 28 28 H 1.08998 * 109.47473 * 70.30276 * 9 8 6 29 29 H 1.09005 * 109.47665 * 190.30947 * 9 8 6 30 30 H 0.96996 * 119.99570 * 180.02562 * 15 14 12 31 31 H 1.08998 * 109.67677 * 77.17733 * 20 5 4 32 32 H 1.09008 * 109.66851 * 316.64697 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2806 2.1385 1.0615 5 6 2.7121 3.3437 0.6695 6 6 2.7178 3.3591 -0.6771 7 8 2.2922 2.1574 -1.0916 8 6 3.1383 4.5409 -1.5125 9 6 3.9216 5.5112 -0.6195 10 6 3.1293 5.7756 0.6639 11 1 2.1045 6.0460 0.4091 12 6 3.7717 6.9052 1.4271 13 1 4.6559 7.3867 1.0363 14 6 3.2306 7.3238 2.6242 15 7 2.1537 6.7377 3.0997 16 14 4.0265 8.7245 3.5698 17 1 3.4335 10.0148 3.1355 18 1 3.7917 8.5362 5.0240 19 1 5.4871 8.7357 3.3016 20 6 3.1236 4.5109 1.5313 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.7723 4.2037 -2.3326 27 1 2.2558 5.0407 -1.9119 28 1 4.8873 5.0735 -0.3668 29 1 4.0762 6.4502 -1.1512 30 1 1.7729 7.0325 3.9417 31 1 4.1219 4.3367 1.9327 32 1 2.4140 4.6306 2.3501 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259626809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:52 Heat of formation + Delta-G solvation = -24.835574 kcal Electronic energy + Delta-G solvation = -14994.056104 eV Core-core repulsion = 12533.344382 eV Total energy + Delta-G solvation = -2460.711722 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.35555 -38.37493 -35.90963 -34.86002 -34.09683 -31.07019 -29.87302 -27.02671 -25.35016 -23.62379 -22.98873 -22.03808 -20.22503 -18.44784 -17.74537 -17.59990 -16.48692 -15.89185 -15.69305 -14.98130 -14.68401 -14.37080 -14.17269 -13.77519 -13.51109 -13.20281 -13.10162 -12.73369 -12.61615 -12.44787 -12.30901 -12.10654 -11.83283 -11.69687 -11.35888 -10.95525 -10.90576 -10.49513 -9.33199 -8.10171 -6.25096 0.52355 1.43487 1.44649 1.54936 1.71126 1.74382 2.44073 3.05830 3.22723 3.90063 4.07338 4.11020 4.23962 4.26126 4.30519 4.40440 4.63323 4.83462 4.84071 4.93098 4.95955 4.98431 5.08594 5.16709 5.22700 5.29407 5.42247 5.51244 5.61756 5.86543 6.00132 6.31167 6.84354 6.89709 7.44559 8.95637 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045930 B = 0.007268 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.481439 B = 3851.392273 C = 4281.607054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.018 4.018 3 C 0.170 3.830 4 N -0.514 5.514 5 C -0.031 4.031 6 C -0.064 4.064 7 O -0.201 6.201 8 C -0.020 4.020 9 C -0.100 4.100 10 C 0.046 3.954 11 H -0.001 1.001 12 C -0.532 4.532 13 H 0.065 0.935 14 C 0.010 3.990 15 N -0.921 5.921 16 Si 0.959 3.041 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.264 1.264 20 C -0.016 4.016 21 H 0.041 0.959 22 H 0.105 0.895 23 H 0.054 0.946 24 H 0.113 0.887 25 H 0.120 0.880 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.260 0.740 31 H 0.043 0.957 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -10.414 -8.946 13.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.056 4.056 3 C -0.036 4.036 4 N -0.244 5.244 5 C -0.150 4.150 6 C -0.117 4.117 7 O -0.089 6.089 8 C -0.057 4.057 9 C -0.138 4.138 10 C 0.027 3.973 11 H 0.017 0.983 12 C -0.570 4.570 13 H 0.084 0.916 14 C -0.189 4.189 15 N -0.560 5.560 16 Si 0.784 3.216 17 H -0.199 1.199 18 H -0.214 1.214 19 H -0.188 1.188 20 C -0.055 4.055 21 H 0.060 0.940 22 H 0.123 0.877 23 H 0.073 0.927 24 H 0.131 0.869 25 H 0.138 0.862 26 H 0.127 0.873 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.510 -10.630 -8.223 13.449 hybrid contribution 0.176 1.082 0.476 1.195 sum -0.334 -9.549 -7.747 12.301 Atomic orbital electron populations 1.21775 0.92441 1.04333 1.01763 1.20319 0.97260 0.81366 1.06669 1.27471 0.99982 0.98134 0.78016 1.70120 1.17677 1.04631 1.31938 1.22238 1.04210 0.94634 0.93937 1.23686 1.05479 0.87172 0.95365 1.84185 1.64592 1.22416 1.37699 1.20315 1.01191 0.87738 0.96468 1.21627 0.98032 0.98262 0.95836 1.18725 0.94840 0.91663 0.92060 0.98291 1.21537 1.12504 1.16970 1.05993 0.91647 1.25856 0.95334 0.99135 0.98584 1.70072 1.22482 1.42683 1.20798 0.85540 0.79221 0.79434 0.77375 1.19921 1.21434 1.18813 1.20003 0.98810 0.89119 0.97550 0.93958 0.87669 0.92651 0.86901 0.86159 0.87335 0.89020 0.92510 0.89618 0.93084 0.93890 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.89 71.98 0.71 -2.10 16 2 C -0.02 -0.40 6.56 29.85 0.20 -0.21 16 3 C 0.17 6.02 7.60 88.31 0.67 6.69 16 4 N -0.51 -22.93 11.29 -291.43 -3.29 -26.22 16 5 C -0.03 -1.46 6.98 41.46 0.29 -1.17 16 6 C -0.06 -2.61 7.24 24.87 0.18 -2.43 16 7 O -0.20 -7.39 10.77 0.73 0.01 -7.38 16 8 C -0.02 -0.68 6.30 29.98 0.19 -0.49 16 9 C -0.10 -3.94 5.15 30.77 0.16 -3.79 16 10 C 0.05 2.35 2.07 -11.37 -0.02 2.32 16 11 H 0.00 -0.06 8.12 -2.39 -0.02 -0.08 16 12 C -0.53 -29.05 8.53 25.60 0.22 -28.84 16 13 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 14 C 0.01 0.54 5.30 84.66 0.45 0.99 16 15 N -0.92 -54.89 11.46 21.45 0.25 -54.64 16 16 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 C -0.02 -0.86 5.19 30.00 0.16 -0.71 16 21 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.12 1.85 8.14 -2.39 -0.02 1.84 16 26 H 0.11 2.86 8.14 -2.39 -0.02 2.85 16 27 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 29 H 0.09 3.06 8.11 -2.38 -0.02 3.04 16 30 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.04 2.30 8.12 -2.39 -0.02 2.28 16 32 H 0.06 3.81 6.45 -2.38 -0.02 3.80 16 Total: -1.00 -68.38 267.16 3.28 -65.09 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.10 Total: 7.16 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 3.20 Total: -29.73 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -3.04 Total: -80.87 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: 0.01 Total: -7.38 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -68.38 3.28 -65.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259626809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.258 kcal (2) G-P(sol) polarization free energy of solvation -68.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds