Wall clock time and date at job start Mon Mar 30 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 109.47140 * 2 1 4 4 N 1.30515 * 125.58015 * 89.97226 * 3 2 1 5 5 C 1.33878 * 108.56006 * 179.97438 * 4 3 2 6 6 C 1.34688 * 107.71418 * 0.05162 * 5 4 3 7 7 O 1.34041 * 107.31104 * 359.92900 * 6 5 4 8 8 C 1.50714 * 124.35631 * 179.97438 * 6 5 4 9 9 C 1.53388 * 108.41001 * 343.53523 * 8 6 5 10 10 C 1.53132 * 109.45295 * 49.68843 * 9 8 6 11 11 H 1.08998 * 109.46796 * 50.09698 * 10 9 8 12 12 C 1.50691 * 109.46841 * 170.08435 * 10 9 8 13 13 H 1.08001 * 120.00092 * 35.15779 * 12 10 9 14 14 C 1.37875 * 120.00327 * 215.15457 * 12 10 9 15 15 N 1.31514 * 120.00377 * 184.67039 * 14 12 10 16 16 Si 1.86804 * 119.99858 * 4.67080 * 14 12 10 17 17 H 1.48504 * 109.46742 * 84.79780 * 16 14 12 18 18 H 1.48494 * 109.47169 * 204.79794 * 16 14 12 19 19 H 1.48503 * 109.47045 * 324.80145 * 16 14 12 20 20 C 1.50794 * 128.12577 * 180.14637 * 5 4 3 21 21 H 1.09003 * 109.46924 * 60.00220 * 1 2 3 22 22 H 1.08996 * 109.46855 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47326 * 299.99892 * 1 2 3 24 24 H 1.08996 * 109.47326 * 240.00108 * 2 1 3 25 25 H 1.09003 * 109.46924 * 119.99780 * 2 1 3 26 26 H 1.08994 * 109.68011 * 223.80526 * 8 6 5 27 27 H 1.08996 * 109.67238 * 103.26231 * 8 6 5 28 28 H 1.08996 * 109.47128 * 169.68011 * 9 8 6 29 29 H 1.08992 * 109.47329 * 289.69363 * 9 8 6 30 30 H 0.96998 * 120.00280 * 180.02562 * 15 14 12 31 31 H 1.08993 * 109.67468 * 283.04946 * 20 5 4 32 32 H 1.09003 * 109.67593 * 43.55011 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2850 2.1370 1.0615 5 6 2.7124 3.3437 0.6696 6 6 2.7177 3.3591 -0.6772 7 8 2.2935 2.1570 -1.0915 8 6 3.1360 4.5417 -1.5126 9 6 3.1397 5.7887 -0.6194 10 6 3.9216 5.4945 0.6640 11 1 4.8875 5.0584 0.4090 12 6 4.1350 6.7762 1.4271 13 1 3.3729 7.5414 1.4214 14 6 5.3032 6.9721 2.1327 15 7 5.4518 8.0492 2.8727 16 14 6.6750 5.7077 2.0377 17 1 7.5141 5.9767 0.8424 18 1 7.5131 5.7938 3.2605 19 1 6.0881 4.3475 1.9345 20 6 3.1276 4.5094 1.5314 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 2.4311 4.6797 -2.3324 27 1 4.1360 4.3735 -1.9120 28 1 3.6115 6.6150 -1.1510 29 1 2.1142 6.0576 -0.3665 30 1 6.2738 8.1872 3.3688 31 1 2.2424 5.0025 1.9330 32 1 3.7539 4.1556 2.3504 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259626813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:56 Heat of formation + Delta-G solvation = -25.668758 kcal Electronic energy + Delta-G solvation = -14996.501391 eV Core-core repulsion = 12535.753539 eV Total energy + Delta-G solvation = -2460.747852 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.42583 -38.51086 -35.96466 -34.87057 -34.14430 -31.67626 -29.94464 -27.06278 -25.36104 -23.66924 -22.88095 -22.06964 -20.26226 -19.09197 -17.88028 -17.59688 -16.36104 -16.08971 -15.57918 -15.03581 -14.83167 -14.56662 -14.32991 -13.94965 -13.67202 -13.46280 -13.28748 -12.80116 -12.61158 -12.57039 -12.14808 -11.92551 -11.91900 -11.80197 -11.36603 -11.13912 -11.11594 -10.67998 -9.40423 -8.30488 -6.34422 0.46837 1.31777 1.35769 1.45136 1.65542 1.66445 2.33137 2.92416 3.15507 3.81296 3.94799 4.05623 4.09219 4.23419 4.26236 4.37267 4.59126 4.62384 4.75252 4.76440 4.92358 4.94530 5.02616 5.05234 5.10426 5.21523 5.26875 5.40988 5.50024 5.60760 5.67847 6.30998 6.73273 6.79809 7.32428 8.86055 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044002 B = 0.007694 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.178954 B = 3638.115180 C = 3834.589475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.021 4.021 3 C 0.174 3.826 4 N -0.511 5.511 5 C -0.035 4.035 6 C -0.056 4.056 7 O -0.199 6.199 8 C -0.024 4.024 9 C -0.098 4.098 10 C 0.015 3.985 11 H 0.034 0.966 12 C -0.511 4.511 13 H 0.041 0.959 14 C 0.020 3.980 15 N -0.945 5.945 16 Si 0.935 3.065 17 H -0.258 1.258 18 H -0.288 1.288 19 H -0.261 1.261 20 C -0.026 4.026 21 H 0.056 0.944 22 H 0.102 0.898 23 H 0.045 0.955 24 H 0.118 0.882 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.266 0.734 31 H 0.063 0.937 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.398 -15.682 -10.142 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.058 4.058 3 C -0.032 4.032 4 N -0.241 5.241 5 C -0.155 4.155 6 C -0.109 4.109 7 O -0.087 6.087 8 C -0.061 4.061 9 C -0.136 4.136 10 C -0.004 4.004 11 H 0.052 0.948 12 C -0.549 4.549 13 H 0.060 0.940 14 C -0.178 4.178 15 N -0.584 5.584 16 Si 0.759 3.241 17 H -0.183 1.183 18 H -0.215 1.215 19 H -0.186 1.186 20 C -0.064 4.064 21 H 0.075 0.925 22 H 0.121 0.879 23 H 0.064 0.936 24 H 0.136 0.864 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.357 -15.805 -9.445 19.479 hybrid contribution 0.810 0.310 0.111 0.874 sum -5.547 -15.495 -9.334 18.921 Atomic orbital electron populations 1.21765 0.92166 1.04327 1.01959 1.20331 0.97473 0.81425 1.06604 1.27430 0.99760 0.98100 0.77942 1.70115 1.17760 1.04355 1.31836 1.21979 1.05078 0.94672 0.93743 1.23681 1.04775 0.87093 0.95312 1.84210 1.64343 1.22384 1.37725 1.20378 1.02962 0.86220 0.96541 1.21595 1.00566 0.95956 0.95435 1.19220 0.94951 0.92920 0.93328 0.94812 1.21166 1.02744 1.01446 1.29558 0.94042 1.25840 1.00889 0.96949 0.94138 1.70033 1.27901 1.29515 1.30994 0.85925 0.79572 0.80385 0.78182 1.18282 1.21455 1.18551 1.20301 0.99429 0.90098 0.96607 0.92515 0.87947 0.93558 0.86410 0.86941 0.87238 0.88283 0.89587 0.92526 0.92460 0.91865 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.89 71.98 0.71 -1.57 16 2 C -0.02 -0.39 6.56 29.85 0.20 -0.19 16 3 C 0.17 5.45 7.60 88.31 0.67 6.12 16 4 N -0.51 -20.18 11.29 -291.43 -3.29 -23.47 16 5 C -0.04 -1.47 6.98 41.46 0.29 -1.18 16 6 C -0.06 -2.01 7.24 24.88 0.18 -1.83 16 7 O -0.20 -6.54 10.77 0.84 0.01 -6.53 16 8 C -0.02 -0.73 6.30 29.98 0.19 -0.54 16 9 C -0.10 -3.63 5.20 30.77 0.16 -3.47 16 10 C 0.02 0.70 1.74 -11.36 -0.02 0.68 16 11 H 0.03 1.56 5.27 -2.39 -0.01 1.55 16 12 C -0.51 -28.51 8.83 25.60 0.23 -28.29 16 13 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 14 C 0.02 1.13 5.47 84.65 0.46 1.59 16 15 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 16 Si 0.93 44.68 26.98 68.60 1.85 46.53 16 17 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 18 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 19 H -0.26 -12.24 6.75 99.48 0.67 -11.57 16 20 C -0.03 -1.19 5.58 30.01 0.17 -1.03 16 21 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.11 1.90 8.14 -2.39 -0.02 1.89 16 26 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 28 H 0.09 3.04 8.11 -2.39 -0.02 3.02 16 29 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 30 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 31 H 0.06 2.97 8.12 -2.39 -0.02 2.95 16 32 H 0.05 2.31 8.06 -2.39 -0.02 2.30 16 Total: -1.00 -69.35 266.39 3.17 -66.18 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.07 Total: 5.12 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 3.23 Total: -29.70 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -2.99 Total: -81.60 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: 0.01 Total: -6.53 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.85 Total: 46.53 kcal Total: -69.35 3.17 -66.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259626813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.509 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds