Wall clock time and date at job start Mon Mar 30 2020 04:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 110.80120 * 2 1 4 4 C 1.54339 * 110.74187 * 123.30041 * 2 1 3 5 5 C 1.51189 * 105.35187 * 144.99873 * 4 2 1 6 6 C 1.34893 * 143.19056 * 162.71984 * 5 4 2 7 7 N 1.36328 * 108.21721 * 180.02562 * 6 5 4 8 8 C 1.46500 * 125.63330 * 180.02562 * 7 6 5 9 9 C 1.36336 * 108.73144 * 359.97438 * 7 6 5 10 10 C 1.34884 * 108.21704 * 0.02562 * 9 7 6 11 11 C 1.51181 * 143.18374 * 180.02562 * 10 9 7 12 12 O 1.42893 * 110.28869 * 78.29107 * 11 10 9 13 13 C 1.50707 * 110.28429 * 316.28153 * 11 10 9 14 14 H 1.08000 * 119.99969 * 145.56926 * 13 11 10 15 15 C 1.37873 * 119.99884 * 325.56759 * 13 11 10 16 16 N 1.31520 * 120.00219 * 160.40677 * 15 13 11 17 17 Si 1.86802 * 120.00016 * 340.40651 * 15 13 11 18 18 H 1.48500 * 109.47059 * 91.43674 * 17 15 13 19 19 H 1.48509 * 109.47240 * 211.43349 * 17 15 13 20 20 H 1.48494 * 109.47163 * 331.43151 * 17 15 13 21 21 H 1.09006 * 109.47079 * 298.14846 * 1 2 3 22 22 H 1.08994 * 109.47177 * 58.15175 * 1 2 3 23 23 H 1.08996 * 109.46973 * 178.15766 * 1 2 3 24 24 H 1.09001 * 110.28916 * 26.00170 * 4 2 1 25 25 H 1.08999 * 110.28471 * 263.99353 * 4 2 1 26 26 H 1.07996 * 125.88844 * 359.96649 * 6 5 4 27 27 H 1.08999 * 109.47426 * 269.97559 * 8 7 6 28 28 H 1.09005 * 109.47105 * 29.97751 * 8 7 6 29 29 H 1.09000 * 109.47277 * 149.97231 * 8 7 6 30 30 H 1.08001 * 125.88679 * 179.97438 * 9 7 6 31 31 H 0.96703 * 114.00145 * 298.54488 * 12 11 10 32 32 H 0.96996 * 119.99937 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0766 -0.7924 1.2064 5 6 3.3353 -1.4647 0.7066 6 6 4.4702 -2.0705 1.1123 7 7 5.1724 -2.4453 0.0056 8 6 6.4645 -3.1356 0.0079 9 6 4.4729 -2.0726 -1.1037 10 6 3.3371 -1.4661 -0.7020 11 6 2.0794 -0.7955 -1.2063 12 8 1.1294 -1.7766 -1.6268 13 6 2.4050 0.1369 -2.3447 14 1 1.7034 0.2644 -3.1558 15 6 3.5986 0.8270 -2.3507 16 7 4.0648 1.3247 -3.4752 17 14 4.5534 1.0553 -0.7614 18 1 5.5203 -0.0603 -0.6004 19 1 5.2886 2.3448 -0.8065 20 1 3.6106 1.0628 0.3858 21 1 -0.3633 0.4848 0.9062 22 1 -0.3633 0.5422 -0.8729 23 1 -0.3633 -1.0271 -0.0330 24 1 1.3512 -1.5398 1.5277 25 1 2.3105 -0.1158 2.0283 26 1 4.7710 -2.2300 2.1372 27 1 7.2693 -2.4004 0.0083 28 1 6.5417 -3.7593 0.8985 29 1 6.5441 -3.7608 -0.8814 30 1 4.7764 -2.2343 -2.1275 31 1 1.4360 -2.3344 -2.3548 32 1 4.9043 1.8106 -3.4793 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259768933.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:57 Heat of formation + Delta-G solvation = 27.154396 kcal Electronic energy + Delta-G solvation = -15969.195647 eV Core-core repulsion = 13510.738379 eV Total energy + Delta-G solvation = -2458.457268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.00205 -37.19441 -33.62795 -32.31582 -31.50269 -28.68998 -27.62156 -26.31162 -24.08956 -22.50577 -19.49513 -18.92248 -18.57867 -16.70797 -16.46936 -15.29765 -14.62634 -14.16880 -13.70913 -13.29058 -13.08915 -12.69865 -12.42512 -12.28100 -12.23983 -11.61286 -11.44901 -11.14699 -10.57985 -10.45259 -10.32928 -10.12704 -9.75096 -9.57785 -9.21883 -8.53100 -8.09074 -7.41423 -7.25575 -6.05549 -4.02116 2.89936 3.42652 3.49618 3.58697 3.64532 3.81930 4.62108 4.95289 5.25573 5.34729 5.41394 5.53702 5.57506 5.80344 5.97075 6.03856 6.05629 6.37958 6.39094 6.52696 6.64673 6.83051 6.86535 7.18469 7.26337 7.29969 7.53438 7.73783 7.83829 7.94927 8.09303 8.57085 8.85857 9.14803 9.68980 11.04523 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023302 B = 0.017918 C = 0.013397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.322369 B = 1562.285208 C = 2089.564148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.085 0.915 4 C -0.037 4.037 5 C -0.186 4.186 6 C -0.023 4.023 7 N -0.457 5.457 8 C 0.084 3.916 9 C 0.023 3.977 10 C -0.193 4.193 11 C 0.303 3.697 12 O -0.567 6.567 13 C -0.551 4.551 14 H 0.075 0.925 15 C 0.091 3.909 16 N -0.889 5.889 17 Si 0.865 3.135 18 H -0.267 1.267 19 H -0.315 1.315 20 H -0.244 1.244 21 H 0.033 0.967 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.150 0.850 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.362 0.638 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.466 -7.426 8.361 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.100 4.100 3 H 0.103 0.897 4 C -0.074 4.074 5 C -0.193 4.193 6 C -0.151 4.151 7 N -0.135 5.135 8 C -0.058 4.058 9 C -0.105 4.105 10 C -0.199 4.199 11 C 0.262 3.738 12 O -0.371 6.371 13 C -0.588 4.588 14 H 0.093 0.907 15 C -0.113 4.113 16 N -0.526 5.526 17 Si 0.695 3.305 18 H -0.192 1.192 19 H -0.244 1.244 20 H -0.168 1.168 21 H 0.052 0.948 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.167 0.833 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.174 0.826 31 H 0.208 0.792 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.576 -7.235 8.753 11.644 hybrid contribution 1.372 0.053 0.275 1.400 sum 3.948 -7.181 9.028 12.193 Atomic orbital electron populations 1.21438 0.95210 1.01503 0.99747 1.22277 0.95339 0.99134 0.93235 0.89697 1.20521 0.92244 0.97037 0.97646 1.20363 0.97080 1.05159 0.96693 1.20515 0.94873 1.09038 0.90661 1.43808 1.17110 1.46836 1.05788 1.21816 0.83705 0.96886 1.03425 1.20790 0.93750 1.05306 0.90667 1.21268 0.98933 1.04784 0.94964 1.17936 0.79762 0.84469 0.91587 1.86289 1.44867 1.50551 1.55396 1.21416 1.04072 1.26453 1.06814 0.90674 1.24873 0.96239 0.94472 0.95700 1.70072 1.20118 1.36588 1.25799 0.87255 0.81170 0.75928 0.86186 1.19243 1.24400 1.16787 0.94762 0.92650 0.92409 0.91844 0.93169 0.83284 0.91857 0.90575 0.90295 0.82617 0.79208 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.70 37.16 0.32 -2.10 16 2 C -0.08 -1.84 2.32 -89.08 -0.21 -2.04 16 3 H 0.08 2.06 5.51 -51.93 -0.29 1.77 16 4 C -0.04 -0.75 5.70 -26.94 -0.15 -0.90 16 5 C -0.19 -3.98 5.19 -104.58 -0.54 -4.52 16 6 C -0.02 -0.44 11.14 -16.74 -0.19 -0.63 16 7 N -0.46 -8.35 2.73 -124.51 -0.34 -8.69 16 8 C 0.08 1.06 11.12 59.85 0.67 1.72 16 9 C 0.02 0.50 8.97 -16.74 -0.15 0.35 16 10 C -0.19 -4.47 3.30 -104.59 -0.35 -4.81 16 11 C 0.30 7.44 0.90 -91.85 -0.08 7.35 16 12 O -0.57 -13.09 11.41 -35.23 -0.40 -13.49 16 13 C -0.55 -15.69 8.98 -34.44 -0.31 -16.00 16 14 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 15 C 0.09 2.63 5.23 -17.82 -0.09 2.54 16 16 N -0.89 -27.29 13.96 55.43 0.77 -26.52 16 17 Si 0.87 22.33 22.37 -169.99 -3.80 18.53 16 18 H -0.27 -6.68 5.15 56.52 0.29 -6.39 16 19 H -0.31 -8.45 7.11 56.52 0.40 -8.05 16 20 H -0.24 -6.06 4.13 56.52 0.23 -5.83 16 21 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 22 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 23 H 0.06 1.14 7.25 -51.93 -0.38 0.76 16 24 H 0.06 1.20 7.89 -51.93 -0.41 0.79 16 25 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.16 3.22 8.06 -52.49 -0.42 2.80 16 31 H 0.36 7.49 9.07 45.56 0.41 7.90 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 249.44 15.07 3.76 3.76 Total: -1.00 -33.17 249.44 -4.97 -38.14 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -3.88 Total: 7.31 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -1.08 Total: -19.04 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.43 Total: -35.21 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.40 Total: -13.49 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -3.80 Total: 18.53 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.17 -4.97 -38.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259768933.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.293 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds