Wall clock time and date at job start Mon Mar 30 2020 04:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47051 * 240.00516 * 2 1 3 5 5 C 1.38265 * 119.94215 * 299.72385 * 4 2 1 6 6 C 1.38149 * 120.05655 * 179.72562 * 5 4 2 7 7 C 1.38735 * 119.93785 * 0.54840 * 6 5 4 8 8 O 1.35904 * 120.05359 * 179.74359 * 7 6 5 9 9 C 1.38731 * 119.89438 * 359.73235 * 7 6 5 10 10 C 1.38145 * 119.93883 * 359.97438 * 9 7 6 11 11 C 1.52999 * 109.47317 * 120.00646 * 2 1 3 12 12 H 1.09001 * 109.47362 * 59.99268 * 11 2 1 13 13 N 1.46898 * 109.47548 * 180.02562 * 11 2 1 14 14 C 1.50706 * 109.46573 * 299.99925 * 11 2 1 15 15 H 1.07995 * 120.00167 * 359.72054 * 14 11 2 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 11 2 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48507 * 109.46754 * 210.00056 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 299.99713 * 1 2 3 24 24 H 1.09001 * 109.46832 * 59.99522 * 1 2 3 25 25 H 1.08004 * 119.97351 * 0.02562 * 5 4 2 26 26 H 1.07993 * 120.02930 * 180.27707 * 6 5 4 27 27 H 0.96693 * 114.00635 * 269.98478 * 8 7 6 28 28 H 1.07992 * 120.03384 * 179.97438 * 9 7 6 29 29 H 1.08003 * 119.96950 * 180.02562 * 10 9 7 30 30 H 1.00899 * 110.99915 * 296.04472 * 13 11 2 31 31 H 1.00900 * 110.99708 * 59.99740 * 13 11 2 32 32 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 1.7023 -2.0357 -1.4454 6 6 2.1568 -2.6875 -2.5755 7 6 2.9544 -2.0143 -3.4894 8 8 3.4071 -2.6547 -4.5993 9 6 3.2890 -0.6861 -3.2687 10 6 2.8269 -0.0372 -2.1401 11 6 2.0400 -0.7214 1.2491 12 1 1.6766 -1.7490 1.2491 13 7 3.5090 -0.7209 1.2495 14 6 1.5376 -0.0110 2.4797 15 1 0.9205 0.8697 2.3806 16 6 1.8703 -0.4825 3.7319 17 7 2.6264 -1.5518 3.8525 18 14 1.2471 0.3976 5.2571 19 1 -0.0612 -0.1775 5.6607 20 1 2.2249 0.2265 6.3616 21 1 1.0821 1.8435 4.9616 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.0846 -2.5605 -0.7316 26 1 1.8950 -3.7214 -2.7451 27 1 4.2595 -3.0952 -4.4792 28 1 3.9101 -0.1600 -3.9784 29 1 3.0867 0.9969 -1.9679 30 1 3.8709 -1.2467 0.4681 31 1 3.8702 0.2213 1.2498 32 1 2.8608 -1.8832 4.7334 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259780027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:23 Heat of formation + Delta-G solvation = -28.365647 kcal Electronic energy + Delta-G solvation = -14884.850876 eV Core-core repulsion = 12423.986078 eV Total energy + Delta-G solvation = -2460.864798 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.61768 -37.30982 -35.02922 -32.11288 -30.72655 -30.34949 -28.31508 -25.50959 -23.41716 -22.58721 -21.56740 -19.18323 -18.22823 -16.67177 -15.47736 -15.32599 -14.88396 -14.51387 -14.01890 -13.63320 -13.31526 -12.98671 -12.72682 -12.24406 -11.92838 -11.79549 -11.30867 -11.01516 -10.89343 -10.64941 -10.40528 -10.37659 -10.11144 -9.58999 -8.88567 -8.70605 -8.36961 -8.10705 -6.88090 -5.82361 -3.96275 1.53849 1.63512 3.34992 3.42522 3.44388 3.91170 4.41798 4.50860 5.12503 5.19717 5.37347 5.42751 5.69033 5.78018 5.94690 6.02170 6.14051 6.25784 6.34417 6.52368 6.63857 6.66074 6.69776 6.87302 6.96794 7.13040 7.13677 7.61873 7.78152 7.95273 8.28380 8.72874 9.09936 9.24852 9.72251 11.22310 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.053247 B = 0.006801 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.721743 B = 4115.851690 C = 4250.446965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 H 0.062 0.938 4 C -0.061 4.061 5 C -0.095 4.095 6 C -0.142 4.142 7 C 0.080 3.920 8 O -0.504 6.504 9 C -0.145 4.145 10 C -0.111 4.111 11 C 0.236 3.764 12 H 0.037 0.963 13 N -0.813 5.813 14 C -0.535 4.535 15 H 0.054 0.946 16 C 0.083 3.917 17 N -0.848 5.848 18 Si 0.879 3.121 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.276 1.276 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.031 0.969 25 H 0.128 0.872 26 H 0.122 0.878 27 H 0.384 0.616 28 H 0.120 0.880 29 H 0.120 0.880 30 H 0.295 0.705 31 H 0.314 0.686 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 -0.064 -11.656 11.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.111 4.111 3 H 0.081 0.919 4 C -0.061 4.061 5 C -0.113 4.113 6 C -0.161 4.161 7 C 0.036 3.964 8 O -0.314 6.314 9 C -0.163 4.163 10 C -0.130 4.130 11 C 0.127 3.873 12 H 0.055 0.945 13 N -0.338 5.338 14 C -0.573 4.573 15 H 0.072 0.928 16 C -0.124 4.124 17 N -0.483 5.483 18 Si 0.707 3.293 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.201 1.201 22 H 0.067 0.933 23 H 0.088 0.912 24 H 0.050 0.950 25 H 0.146 0.854 26 H 0.140 0.860 27 H 0.239 0.761 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.197 -0.379 -11.056 11.064 hybrid contribution 0.125 0.770 0.106 0.787 sum 0.322 0.390 -10.950 10.962 Atomic orbital electron populations 1.21661 0.94864 1.01255 1.00542 1.21339 0.96285 0.99207 0.94271 0.91934 1.20353 0.95477 0.94124 0.96159 1.20992 0.99560 0.94439 0.96315 1.21368 1.00218 1.00259 0.94225 1.18394 0.99002 0.91418 0.87549 1.84807 1.41422 1.71532 1.33595 1.21294 1.02061 0.94776 0.98189 1.20990 0.98347 0.99821 0.93797 1.19051 0.84477 0.95198 0.88602 0.94523 1.59135 1.09817 1.17279 1.47537 1.20958 1.32790 1.13266 0.90311 0.92793 1.24953 0.94281 0.94664 0.98481 1.70110 1.34011 1.21832 1.22356 0.86839 0.78506 0.80243 0.83668 1.20882 1.21405 1.20111 0.93321 0.91224 0.95038 0.85438 0.85977 0.76129 0.86173 0.86166 0.89490 0.87487 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.76 37.16 0.33 -1.98 16 2 C -0.09 -1.75 2.27 -91.77 -0.21 -1.96 16 3 H 0.06 1.22 7.87 -51.93 -0.41 0.82 16 4 C -0.06 -1.06 3.75 -104.60 -0.39 -1.45 16 5 C -0.09 -1.59 8.70 -39.60 -0.34 -1.94 16 6 C -0.14 -2.14 9.99 -39.43 -0.39 -2.54 16 7 C 0.08 1.17 6.71 -39.22 -0.26 0.90 16 8 O -0.50 -6.37 13.50 -19.44 -0.26 -6.63 16 9 C -0.14 -2.07 9.99 -39.43 -0.39 -2.47 16 10 C -0.11 -1.73 9.66 -39.61 -0.38 -2.11 16 11 C 0.24 5.59 2.08 -68.86 -0.14 5.45 16 12 H 0.04 0.97 7.37 -51.93 -0.38 0.59 16 13 N -0.81 -18.91 8.47 -5.65 -0.05 -18.96 16 14 C -0.53 -14.18 7.99 -34.44 -0.28 -14.46 16 15 H 0.05 1.41 6.72 -52.49 -0.35 1.06 16 16 C 0.08 2.28 5.39 -17.82 -0.10 2.18 16 17 N -0.85 -24.66 12.77 55.43 0.71 -23.95 16 18 Si 0.88 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H 0.05 0.87 7.40 -51.93 -0.38 0.49 16 23 H 0.07 1.35 6.62 -51.93 -0.34 1.01 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.13 2.18 7.09 -52.48 -0.37 1.80 16 26 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 27 H 0.38 3.01 9.06 45.56 0.41 3.42 16 28 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.12 1.70 7.94 -52.48 -0.42 1.29 16 30 H 0.29 6.31 8.13 -39.29 -0.32 5.99 16 31 H 0.31 7.05 8.99 -39.29 -0.35 6.69 16 32 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 270.64 15.07 4.08 4.08 Total: -1.00 -30.07 270.64 -6.44 -36.51 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -3.32 Total: 13.22 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -2.57 Total: -20.36 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.66 Total: -42.91 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.26 Total: -6.63 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.07 -6.44 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.142 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds