Wall clock time and date at job start Mon Mar 30 2020 04:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47502 * 2 1 4 4 C 1.50706 * 109.47051 * 240.00516 * 2 1 3 5 5 C 1.38265 * 119.94215 * 299.72385 * 4 2 1 6 6 C 1.38149 * 120.05655 * 179.72562 * 5 4 2 7 7 C 1.38735 * 119.93785 * 0.54840 * 6 5 4 8 8 O 1.35904 * 120.05359 * 179.74359 * 7 6 5 9 9 C 1.38731 * 119.89438 * 359.73235 * 7 6 5 10 10 C 1.38145 * 119.93883 * 359.97438 * 9 7 6 11 11 C 1.52999 * 109.47317 * 120.00646 * 2 1 3 12 12 H 1.09001 * 109.47362 * 59.99268 * 11 2 1 13 13 N 1.46898 * 109.47548 * 180.02562 * 11 2 1 14 14 C 1.50706 * 109.46573 * 299.99925 * 11 2 1 15 15 H 1.07995 * 120.00167 * 359.72054 * 14 11 2 16 16 C 1.37879 * 119.99394 * 179.97438 * 14 11 2 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47474 * 90.00322 * 18 16 14 20 20 H 1.48507 * 109.46754 * 210.00056 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99887 * 18 16 14 22 22 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47153 * 299.99713 * 1 2 3 24 24 H 1.09001 * 109.46832 * 59.99522 * 1 2 3 25 25 H 1.08004 * 119.97351 * 0.02562 * 5 4 2 26 26 H 1.07993 * 120.02930 * 180.27707 * 6 5 4 27 27 H 0.96693 * 114.00635 * 269.98478 * 8 7 6 28 28 H 1.07992 * 120.03384 * 179.97438 * 9 7 6 29 29 H 1.08003 * 119.96950 * 180.02562 * 10 9 7 30 30 H 1.00899 * 110.99915 * 296.04472 * 13 11 2 31 31 H 1.00900 * 110.99708 * 59.99740 * 13 11 2 32 32 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 6 1.7023 -2.0357 -1.4454 6 6 2.1568 -2.6875 -2.5755 7 6 2.9544 -2.0143 -3.4894 8 8 3.4071 -2.6547 -4.5993 9 6 3.2890 -0.6861 -3.2687 10 6 2.8269 -0.0372 -2.1401 11 6 2.0400 -0.7214 1.2491 12 1 1.6766 -1.7490 1.2491 13 7 3.5090 -0.7209 1.2495 14 6 1.5376 -0.0110 2.4797 15 1 0.9205 0.8697 2.3806 16 6 1.8703 -0.4825 3.7319 17 7 2.6264 -1.5518 3.8525 18 14 1.2471 0.3976 5.2571 19 1 -0.0612 -0.1775 5.6607 20 1 2.2249 0.2265 6.3616 21 1 1.0821 1.8435 4.9616 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.0846 -2.5605 -0.7316 26 1 1.8950 -3.7214 -2.7451 27 1 4.2595 -3.0952 -4.4792 28 1 3.9101 -0.1600 -3.9784 29 1 3.0867 0.9969 -1.9679 30 1 3.8709 -1.2467 0.4681 31 1 3.8702 0.2213 1.2498 32 1 2.8608 -1.8832 4.7334 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259780027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:23 Heat of formation + Delta-G solvation = -49.945653 kcal Electronic energy + Delta-G solvation = -14885.786655 eV Core-core repulsion = 12423.986078 eV Total energy + Delta-G solvation = -2461.800577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.82572 -38.58797 -36.53168 -34.01097 -32.12056 -31.89452 -29.66702 -27.47886 -24.92700 -23.85530 -23.05533 -20.73093 -19.30035 -18.57614 -16.83175 -16.69457 -16.38361 -16.05709 -15.76338 -15.00345 -14.81333 -14.43554 -14.24404 -13.79749 -13.36367 -13.07140 -12.94184 -12.75963 -12.66292 -12.38003 -12.02243 -11.93288 -11.50913 -11.22616 -10.83149 -10.47369 -9.89051 -9.36169 -8.68314 -7.91378 -6.10922 0.35047 0.44932 1.44498 1.46346 1.54614 2.50073 2.74625 3.32804 3.37121 3.91922 4.00864 4.11355 4.36562 4.48339 4.50734 4.65757 4.69522 4.83179 5.04601 5.10792 5.16485 5.26284 5.35713 5.48443 5.51574 5.64388 5.84811 5.90161 5.95744 6.29048 6.76443 6.89642 7.22433 7.37316 7.61407 9.12159 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.053247 B = 0.006801 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.721743 B = 4115.851690 C = 4250.446965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.078 4.078 3 H 0.061 0.939 4 C -0.079 4.079 5 C -0.108 4.108 6 C -0.147 4.147 7 C 0.089 3.911 8 O -0.508 6.508 9 C -0.143 4.143 10 C -0.111 4.111 11 C 0.241 3.759 12 H 0.002 0.998 13 N -0.824 5.824 14 C -0.542 4.542 15 H 0.054 0.946 16 C 0.031 3.969 17 N -0.884 5.884 18 Si 0.942 3.058 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.269 1.269 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.113 0.887 26 H 0.137 0.863 27 H 0.408 0.592 28 H 0.146 0.854 29 H 0.133 0.867 30 H 0.306 0.694 31 H 0.318 0.682 32 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.983 0.620 -13.080 13.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 H 0.080 0.920 4 C -0.080 4.080 5 C -0.126 4.126 6 C -0.166 4.166 7 C 0.045 3.955 8 O -0.320 6.320 9 C -0.161 4.161 10 C -0.129 4.129 11 C 0.131 3.869 12 H 0.020 0.980 13 N -0.350 5.350 14 C -0.581 4.581 15 H 0.072 0.928 16 C -0.171 4.171 17 N -0.521 5.521 18 Si 0.768 3.232 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.194 1.194 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.131 0.869 26 H 0.155 0.845 27 H 0.266 0.734 28 H 0.164 0.836 29 H 0.151 0.849 30 H 0.117 0.883 31 H 0.130 0.870 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.505 0.308 -12.492 12.506 hybrid contribution 0.062 0.505 0.428 0.664 sum 0.567 0.812 -12.064 12.105 Atomic orbital electron populations 1.21612 0.94401 1.01132 1.00863 1.21019 0.96727 0.98621 0.93508 0.92035 1.20137 0.97300 0.94425 0.96092 1.20949 1.00156 0.94527 0.96977 1.21520 1.00221 1.01047 0.93797 1.18467 0.98121 0.91620 0.87320 1.84748 1.43108 1.71610 1.32583 1.21544 1.01755 0.94757 0.98043 1.21124 0.97590 1.00437 0.93756 1.18795 0.84760 0.93439 0.89870 0.97976 1.58960 1.09783 1.17773 1.48468 1.21367 1.32148 1.13018 0.91566 0.92786 1.25676 0.94670 0.95381 1.01408 1.70247 1.35760 1.23414 1.22694 0.85845 0.77821 0.79382 0.80112 1.20492 1.21612 1.19379 0.93697 0.92726 0.92741 0.86900 0.84486 0.73371 0.83640 0.84883 0.88315 0.87015 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.47 8.76 71.98 0.63 -3.84 16 2 C -0.08 -3.01 2.27 -11.54 -0.03 -3.04 16 3 H 0.06 2.36 7.87 -2.39 -0.02 2.35 16 4 C -0.08 -2.68 3.75 -19.85 -0.07 -2.75 16 5 C -0.11 -3.58 8.70 22.25 0.19 -3.39 16 6 C -0.15 -4.21 9.99 22.37 0.22 -3.99 16 7 C 0.09 2.34 6.71 22.51 0.15 2.49 16 8 O -0.51 -11.07 13.50 -92.47 -1.25 -12.32 16 9 C -0.14 -3.65 9.99 22.37 0.22 -3.43 16 10 C -0.11 -3.21 9.66 22.25 0.22 -2.99 16 11 C 0.24 11.60 2.08 44.17 0.09 11.69 16 12 H 0.00 0.13 7.37 -2.39 -0.02 0.11 16 13 N -0.82 -38.58 8.47 -171.80 -1.45 -40.04 16 14 C -0.54 -29.04 7.99 25.60 0.20 -28.83 16 15 H 0.05 2.83 6.72 -2.91 -0.02 2.81 16 16 C 0.03 1.74 5.39 84.66 0.46 2.20 16 17 N -0.88 -52.28 12.77 21.45 0.27 -52.01 16 18 Si 0.94 43.69 29.54 68.60 2.03 45.72 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H 0.04 1.63 7.40 -2.39 -0.02 1.62 16 23 H 0.05 2.12 6.62 -2.39 -0.02 2.10 16 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.11 3.99 7.09 -2.91 -0.02 3.97 16 26 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 27 H 0.41 4.89 9.06 -74.06 -0.67 4.22 16 28 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 29 H 0.13 3.44 7.94 -2.91 -0.02 3.42 16 30 H 0.31 13.11 8.13 -89.69 -0.73 12.38 16 31 H 0.32 14.26 8.99 -89.69 -0.81 13.46 16 32 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -63.46 270.64 0.83 -62.63 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: -1.06 Total: 31.90 kcal Atomic # 6 Polarization: -38.17 SS G_CDS: 2.29 Total: -35.88 kcal Atomic # 7 Polarization: -90.86 SS G_CDS: -1.18 Total: -92.04 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.25 Total: -12.32 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -63.46 0.83 -62.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.682 kcal (2) G-P(sol) polarization free energy of solvation -63.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds