Wall clock time and date at job start Mon Mar 30 2020 03:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.35625 * 117.00126 * 60.00585 * 5 2 1 7 7 C 1.39550 * 119.56495 * 179.97438 * 6 5 2 8 8 C 1.38680 * 119.50591 * 179.97438 * 7 6 5 9 9 C 1.38336 * 118.65797 * 359.97438 * 8 7 6 10 10 C 1.40558 * 119.10871 * 0.02562 * 9 8 7 11 11 C 1.41338 * 119.79519 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99759 * 359.97438 * 11 10 9 13 13 C 1.40030 * 120.00077 * 179.97438 * 11 10 9 14 14 N 1.30736 * 120.00023 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99822 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46871 * 90.00374 * 15 13 11 17 17 H 1.48506 * 109.47126 * 209.99782 * 15 13 11 18 18 H 1.48494 * 109.47328 * 329.99738 * 15 13 11 19 19 N 1.31798 * 119.55851 * 359.72520 * 6 5 2 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 24 24 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 27 27 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 29 29 H 1.07997 * 120.24731 * 359.97438 * 7 6 5 30 30 H 1.08004 * 120.67085 * 180.02562 * 8 7 6 31 31 H 1.08003 * 120.44691 * 179.97438 * 9 8 7 32 32 H 0.97005 * 120.00271 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.6420 -0.1583 -2.3672 7 6 2.0778 -0.7736 -3.5415 8 6 1.7041 -0.2459 -4.7683 9 6 0.9043 0.8826 -4.7892 10 6 0.4984 1.4557 -3.5716 11 6 -0.3184 2.6092 -3.5761 12 1 -0.6284 3.0477 -4.5131 13 6 -0.7256 3.1834 -2.3656 14 7 -0.3499 2.6529 -1.2313 15 14 -1.8045 4.7083 -2.3715 16 1 -3.2333 4.3036 -2.3739 17 1 -1.5219 5.5194 -1.1601 18 1 -1.5161 5.5140 -3.5850 19 7 0.8771 0.9142 -2.4092 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2493 27 1 3.1300 -0.7217 1.2491 28 1 1.6766 -0.2074 2.1393 29 1 2.7013 -1.6542 -3.4952 30 1 2.0302 -0.7072 -5.6888 31 1 0.5965 1.3179 -5.7285 32 1 -0.6317 3.0508 -0.3927 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259920774.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:57 Heat of formation + Delta-G solvation = -2.615038 kcal Electronic energy + Delta-G solvation = -15725.575744 eV Core-core repulsion = 13265.827576 eV Total energy + Delta-G solvation = -2459.748168 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.24483 -36.96396 -33.93111 -32.61824 -30.49952 -29.35246 -26.51474 -26.19574 -25.54337 -22.12341 -21.19964 -19.18369 -17.61802 -16.08852 -15.03181 -14.78311 -14.38395 -14.29486 -13.44631 -13.29070 -13.02308 -12.68813 -11.82368 -11.74916 -11.60381 -11.17509 -11.10708 -10.97955 -10.84136 -10.74974 -10.59496 -10.39283 -10.10051 -9.68090 -9.64846 -9.20638 -8.13529 -7.40262 -7.10482 -6.50696 -4.59320 2.74661 3.02670 3.05864 3.08250 3.19127 3.89027 4.29652 4.68950 5.68024 5.72335 5.83889 5.96806 6.05703 6.16570 6.27224 6.39803 6.45566 6.62773 6.68880 6.75268 6.78243 6.89952 6.95420 7.05361 7.12203 7.51287 7.73216 7.86911 7.87294 7.96833 8.09678 8.50320 8.68919 9.03821 9.95941 10.20828 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024565 B = 0.013734 C = 0.009373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.551181 B = 2038.221316 C = 2986.709938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.131 3.869 3 C -0.181 4.181 4 C -0.138 4.138 5 O -0.323 6.323 6 C 0.339 3.661 7 C -0.330 4.330 8 C -0.034 4.034 9 C -0.303 4.303 10 C 0.282 3.718 11 C -0.428 4.428 12 H 0.085 0.915 13 C 0.072 3.928 14 N -0.716 5.716 15 Si 0.908 3.092 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.263 1.263 19 N -0.527 5.527 20 H 0.139 0.861 21 H 0.024 0.976 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.025 0.975 25 H 0.138 0.862 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.443 -0.604 2.664 2.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.093 3.907 3 C -0.238 4.238 4 C -0.196 4.196 5 O -0.232 6.232 6 C 0.155 3.845 7 C -0.353 4.353 8 C -0.058 4.058 9 C -0.325 4.325 10 C 0.157 3.843 11 C -0.460 4.460 12 H 0.103 0.897 13 C -0.153 4.153 14 N -0.338 5.338 15 Si 0.732 3.268 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.187 1.187 19 N -0.255 5.255 20 H 0.157 0.843 21 H 0.044 0.956 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.044 0.956 25 H 0.156 0.844 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.307 -0.414 3.728 3.764 hybrid contribution -0.222 0.306 -0.503 0.629 sum 0.085 -0.107 3.226 3.229 Atomic orbital electron populations 1.22729 0.94543 0.99942 1.06681 1.21322 0.94667 0.92193 0.82475 1.22713 0.97931 0.96562 1.06632 1.21849 1.00998 1.00354 0.96367 1.86110 1.71024 1.53643 1.12431 1.19968 0.90291 0.90172 0.84063 1.20225 1.16731 1.07503 0.90851 1.20644 0.94990 0.94659 0.95461 1.21609 1.10448 1.02127 0.98343 1.18278 0.89121 0.91207 0.85713 1.19601 1.25157 1.07577 0.93627 0.89737 1.26069 0.95641 0.98135 0.95410 1.70007 1.31639 1.34076 0.98107 0.86318 0.80396 0.81176 0.78879 1.19486 1.20166 1.18668 1.68453 1.17882 1.11144 1.28068 0.84327 0.95645 0.93875 0.93855 0.95629 0.84429 0.92790 0.92791 0.91589 0.88320 0.88075 0.88227 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.93 7.86 37.16 0.29 -3.64 16 2 C 0.13 2.78 1.11 -90.62 -0.10 2.68 16 3 C -0.18 -3.92 7.86 37.16 0.29 -3.62 16 4 C -0.14 -2.37 8.84 37.16 0.33 -2.04 16 5 O -0.32 -7.70 9.77 -18.57 -0.18 -7.88 16 6 C 0.34 8.60 6.78 -17.08 -0.12 8.48 16 7 C -0.33 -7.89 10.06 -38.93 -0.39 -8.28 16 8 C -0.03 -0.76 10.15 -39.38 -0.40 -1.16 16 9 C -0.30 -7.35 9.83 -38.67 -0.38 -7.73 16 10 C 0.28 7.41 6.55 -84.99 -0.56 6.85 16 11 C -0.43 -10.80 9.14 -37.73 -0.34 -11.14 16 12 H 0.08 2.02 7.85 -52.48 -0.41 1.60 16 13 C 0.07 1.69 5.50 -17.35 -0.10 1.59 16 14 N -0.72 -17.01 7.02 55.55 0.39 -16.62 16 15 Si 0.91 17.65 29.56 -169.99 -5.02 12.62 16 16 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 17 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 18 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 19 N -0.53 -13.74 2.93 -11.19 -0.03 -13.77 16 20 H 0.14 3.43 3.76 -51.93 -0.20 3.24 16 21 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.14 3.41 3.79 -51.93 -0.20 3.21 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 31 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 32 H 0.27 5.99 8.29 -40.82 -0.34 5.65 16 LS Contribution 259.14 15.07 3.91 3.91 Total: -1.00 -26.32 259.14 -6.58 -32.90 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.17 Total: 6.84 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.47 Total: -18.00 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.36 Total: -30.39 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.18 Total: -7.88 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.02 Total: 12.62 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.32 -6.58 -32.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259920774.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.284 kcal (2) G-P(sol) polarization free energy of solvation -26.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds