Wall clock time and date at job start Mon Mar 30 2020 03:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 6 6 C 1.35625 * 117.00126 * 60.00585 * 5 2 1 7 7 C 1.39550 * 119.56495 * 179.97438 * 6 5 2 8 8 C 1.38680 * 119.50591 * 179.97438 * 7 6 5 9 9 C 1.38336 * 118.65797 * 359.97438 * 8 7 6 10 10 C 1.40558 * 119.10871 * 0.02562 * 9 8 7 11 11 C 1.41338 * 119.79519 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99759 * 359.97438 * 11 10 9 13 13 C 1.40030 * 120.00077 * 179.97438 * 11 10 9 14 14 N 1.30736 * 120.00023 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99822 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.46871 * 90.00374 * 15 13 11 17 17 H 1.48506 * 109.47126 * 209.99782 * 15 13 11 18 18 H 1.48494 * 109.47328 * 329.99738 * 15 13 11 19 19 N 1.31798 * 119.55851 * 359.72520 * 6 5 2 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 24 24 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 26 26 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 27 27 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 28 28 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 29 29 H 1.07997 * 120.24731 * 359.97438 * 7 6 5 30 30 H 1.08004 * 120.67085 * 180.02562 * 8 7 6 31 31 H 1.08003 * 120.44691 * 179.97438 * 9 8 7 32 32 H 0.97005 * 120.00271 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0064 -0.6737 -1.1667 6 6 1.6420 -0.1583 -2.3672 7 6 2.0778 -0.7736 -3.5415 8 6 1.7041 -0.2459 -4.7683 9 6 0.9043 0.8826 -4.7892 10 6 0.4984 1.4557 -3.5716 11 6 -0.3184 2.6092 -3.5761 12 1 -0.6284 3.0477 -4.5131 13 6 -0.7256 3.1834 -2.3656 14 7 -0.3499 2.6529 -1.2313 15 14 -1.8045 4.7083 -2.3715 16 1 -3.2333 4.3036 -2.3739 17 1 -1.5219 5.5194 -1.1601 18 1 -1.5161 5.5140 -3.5850 19 7 0.8771 0.9142 -2.4092 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 -1.7489 1.2493 27 1 3.1300 -0.7217 1.2491 28 1 1.6766 -0.2074 2.1393 29 1 2.7013 -1.6542 -3.4952 30 1 2.0302 -0.7072 -5.6888 31 1 0.5965 1.3179 -5.7285 32 1 -0.6317 3.0508 -0.3927 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259920774.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:57 Heat of formation + Delta-G solvation = -15.940050 kcal Electronic energy + Delta-G solvation = -15726.153560 eV Core-core repulsion = 13265.827576 eV Total energy + Delta-G solvation = -2460.325984 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.04144 -38.74959 -35.71174 -34.32112 -32.33879 -31.20736 -28.02774 -27.91144 -27.37770 -23.93197 -23.04708 -20.90099 -19.45237 -17.85578 -16.77647 -16.51456 -16.20471 -16.05240 -15.19050 -14.98089 -14.70969 -14.38252 -13.52060 -13.18396 -13.15398 -12.80180 -12.76881 -12.73324 -12.54631 -12.51300 -12.31218 -12.14889 -11.79350 -11.37231 -11.35354 -10.95609 -9.98517 -9.23941 -8.98048 -8.27276 -6.47484 0.95398 1.19198 1.46737 1.56276 1.59126 2.26142 2.59032 2.87652 3.90512 4.13896 4.19471 4.31881 4.38991 4.50440 4.78286 4.83225 4.87048 4.93641 4.99863 5.01731 5.03619 5.23975 5.26552 5.27571 5.38426 5.66917 5.89027 6.07073 6.07828 6.16651 6.24917 6.65819 6.84810 7.17370 8.08102 8.44430 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024565 B = 0.013734 C = 0.009373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.551181 B = 2038.221316 C = 2986.709938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.121 3.879 3 C -0.176 4.176 4 C -0.131 4.131 5 O -0.331 6.331 6 C 0.316 3.684 7 C -0.345 4.345 8 C -0.029 4.029 9 C -0.323 4.323 10 C 0.246 3.754 11 C -0.455 4.455 12 H 0.088 0.912 13 C 0.032 3.968 14 N -0.727 5.727 15 Si 0.982 3.018 16 H -0.267 1.267 17 H -0.269 1.269 18 H -0.262 1.262 19 N -0.533 5.533 20 H 0.110 0.890 21 H 0.025 0.975 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.025 0.975 25 H 0.109 0.891 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.139 0.861 31 H 0.112 0.888 32 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 -0.337 3.370 3.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.084 3.916 3 C -0.233 4.233 4 C -0.188 4.188 5 O -0.241 6.241 6 C 0.132 3.868 7 C -0.368 4.368 8 C -0.053 4.053 9 C -0.345 4.345 10 C 0.122 3.878 11 C -0.486 4.486 12 H 0.106 0.894 13 C -0.191 4.191 14 N -0.349 5.349 15 Si 0.803 3.197 16 H -0.192 1.192 17 H -0.194 1.194 18 H -0.186 1.186 19 N -0.262 5.262 20 H 0.128 0.872 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.044 0.956 25 H 0.127 0.873 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.132 0.868 30 H 0.157 0.843 31 H 0.130 0.870 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.146 -0.163 4.434 4.440 hybrid contribution -0.154 0.202 -0.700 0.744 sum -0.008 0.039 3.735 3.735 Atomic orbital electron populations 1.22598 0.95119 0.99664 1.05989 1.21626 0.94462 0.92461 0.83092 1.22583 0.97833 0.96960 1.05925 1.21823 1.01516 1.00573 0.94880 1.86105 1.71200 1.54043 1.12712 1.20359 0.90762 0.90550 0.85094 1.20574 1.17046 1.08122 0.91035 1.21023 0.93746 0.93873 0.96612 1.21833 1.11299 1.03040 0.98329 1.18779 0.90146 0.92224 0.86702 1.19904 1.25944 1.08054 0.94711 0.89393 1.26816 0.96763 1.00881 0.94683 1.70110 1.31401 1.34801 0.98581 0.85205 0.78288 0.77276 0.78919 1.19238 1.19384 1.18598 1.68493 1.18151 1.11447 1.28137 0.87198 0.95613 0.92320 0.92316 0.95577 0.87311 0.92009 0.92002 0.89217 0.86752 0.84344 0.87000 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.51 7.86 71.98 0.57 -6.94 16 2 C 0.12 5.00 1.11 -10.79 -0.01 4.99 16 3 C -0.18 -7.47 7.86 71.98 0.57 -6.91 16 4 C -0.13 -4.16 8.84 71.98 0.64 -3.52 16 5 O -0.33 -15.69 9.77 -89.37 -0.87 -16.57 16 6 C 0.32 16.17 6.78 85.01 0.58 16.74 16 7 C -0.34 -16.34 10.06 22.69 0.23 -16.12 16 8 C -0.03 -1.29 10.15 22.40 0.23 -1.06 16 9 C -0.32 -15.72 9.83 22.86 0.22 -15.49 16 10 C 0.25 13.18 6.55 40.18 0.26 13.44 16 11 C -0.45 -23.27 9.14 23.47 0.21 -23.06 16 12 H 0.09 4.25 7.85 -2.91 -0.02 4.23 16 13 C 0.03 1.49 5.50 85.29 0.47 1.96 16 14 N -0.73 -34.58 7.02 21.84 0.15 -34.43 16 15 Si 0.98 35.86 29.56 68.60 2.03 37.88 16 16 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 17 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 18 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 19 N -0.53 -28.25 2.93 -302.44 -0.89 -29.14 16 20 H 0.11 5.48 3.76 -2.39 -0.01 5.47 16 21 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.11 5.42 3.79 -2.39 -0.01 5.41 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 30 H 0.14 4.98 8.06 -2.91 -0.02 4.95 16 31 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 32 H 0.28 12.12 8.29 -92.70 -0.77 11.35 16 Total: -1.00 -56.26 259.14 5.49 -50.77 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 1.10 Total: 27.45 kcal Atomic # 6 Polarization: -39.93 SS G_CDS: 3.96 Total: -35.97 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -0.73 Total: -63.57 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.87 Total: -16.57 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.88 kcal Total: -56.26 5.49 -50.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259920774.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.833 kcal (2) G-P(sol) polarization free energy of solvation -56.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds