Wall clock time and date at job start Mon Mar 30 2020 03:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46718 * 2 1 4 4 C 1.52994 * 109.47305 * 239.99965 * 2 1 3 5 5 O 1.42898 * 109.47126 * 119.99504 * 2 1 3 6 6 C 1.35392 * 116.99746 * 60.00428 * 5 2 1 7 7 N 1.32039 * 119.88042 * 359.97438 * 6 5 2 8 8 C 1.32031 * 121.89458 * 180.02562 * 7 6 5 9 9 C 1.38636 * 121.41228 * 0.02562 * 8 7 6 10 10 C 1.38016 * 119.57851 * 359.97438 * 9 8 7 11 11 C 1.41023 * 118.26185 * 359.97438 * 10 9 8 12 12 C 1.41127 * 120.69474 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99756 * 150.38581 * 12 11 10 14 14 C 1.39957 * 119.99973 * 330.37997 * 12 11 10 15 15 N 1.30848 * 119.99663 * 161.81846 * 14 12 11 16 16 Si 1.86802 * 120.00015 * 341.82710 * 14 12 11 17 17 H 1.48498 * 109.47322 * 95.39804 * 16 14 12 18 18 H 1.48499 * 109.46630 * 215.39738 * 16 14 12 19 19 H 1.48502 * 109.47222 * 335.39046 * 16 14 12 20 20 H 1.08996 * 109.47468 * 299.99924 * 1 2 3 21 21 H 1.09003 * 109.47208 * 60.00683 * 1 2 3 22 22 H 1.09002 * 109.46698 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47149 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.46723 * 299.99614 * 3 2 1 25 25 H 1.08994 * 109.47459 * 59.99460 * 3 2 1 26 26 H 1.09002 * 109.47041 * 299.99542 * 4 2 1 27 27 H 1.09000 * 109.47413 * 60.00063 * 4 2 1 28 28 H 1.09001 * 109.47038 * 180.02562 * 4 2 1 29 29 H 1.08001 * 119.29084 * 180.27736 * 8 7 6 30 30 H 1.08001 * 120.21232 * 180.02562 * 9 8 7 31 31 H 1.07998 * 120.87101 * 180.02562 * 10 9 8 32 32 H 0.97009 * 119.99777 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6735 1.1668 6 6 1.6426 -1.9686 1.3205 7 7 0.8804 -2.5500 0.4124 8 6 0.5018 -3.8100 0.5226 9 6 0.8874 -4.5885 1.6029 10 6 1.6845 -4.0407 2.5875 11 6 2.0806 -2.6939 2.4534 12 6 2.8950 -2.0818 3.4300 13 1 3.5710 -1.2879 3.1490 14 6 2.8265 -2.5037 4.7627 15 7 3.7961 -2.2126 5.5917 16 14 1.3510 -3.4826 5.3579 17 1 1.6611 -4.9334 5.2943 18 1 1.0387 -3.1041 6.7595 19 1 0.1802 -3.1882 4.4932 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.6765 1.9564 0.8899 26 1 1.6768 -1.7489 -1.2491 27 1 1.6768 -0.2074 -2.1392 28 1 3.1300 -0.7216 -1.2489 29 1 -0.1183 -4.2447 -0.2475 30 1 0.5668 -5.6174 1.6733 31 1 1.9975 -4.6282 3.4379 32 1 3.7488 -2.5053 6.5154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259978661.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:01 Heat of formation + Delta-G solvation = -11.586296 kcal Electronic energy + Delta-G solvation = -15427.160051 eV Core-core repulsion = 12967.022860 eV Total energy + Delta-G solvation = -2460.137191 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.55584 -37.27385 -34.00367 -33.15802 -31.32429 -29.49776 -26.85178 -26.75836 -25.33493 -22.69044 -21.19996 -19.57603 -17.48967 -16.65258 -15.91828 -15.03093 -14.56706 -14.14619 -13.69867 -13.50136 -13.39550 -12.95035 -12.27793 -12.03239 -11.90967 -11.78484 -11.43604 -11.35001 -11.30933 -10.98515 -10.77319 -10.45970 -10.06066 -9.91283 -9.80794 -9.42988 -8.33482 -8.15019 -7.35263 -7.01047 -4.45250 2.43962 2.59156 3.05049 3.15695 3.26741 3.92072 4.13349 4.50101 5.29212 5.35471 5.45793 5.58059 5.65653 5.92959 6.03805 6.04710 6.14835 6.19113 6.25843 6.33281 6.48560 6.48927 6.60467 6.70022 6.93843 6.97761 7.06521 7.32531 7.50500 7.72433 8.17042 8.31416 8.67158 8.76599 9.27136 10.00232 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030621 B = 0.011285 C = 0.009210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.190134 B = 2480.631525 C = 3039.542380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.119 3.881 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.291 6.291 6 C 0.235 3.765 7 N -0.508 5.508 8 C -0.022 4.022 9 C -0.149 4.149 10 C -0.207 4.207 11 C 0.044 3.956 12 C -0.416 4.416 13 H 0.099 0.901 14 C 0.082 3.918 15 N -0.800 5.800 16 Si 0.910 3.090 17 H -0.269 1.269 18 H -0.288 1.288 19 H -0.246 1.246 20 H 0.049 0.951 21 H 0.051 0.949 22 H 0.094 0.906 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.126 0.874 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.565 1.246 -6.187 7.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.081 3.919 3 C -0.195 4.195 4 C -0.235 4.235 5 O -0.199 6.199 6 C 0.050 3.950 7 N -0.231 5.231 8 C -0.173 4.173 9 C -0.169 4.169 10 C -0.232 4.232 11 C 0.038 3.962 12 C -0.445 4.445 13 H 0.117 0.883 14 C -0.138 4.138 15 N -0.423 5.423 16 Si 0.736 3.264 17 H -0.195 1.195 18 H -0.215 1.215 19 H -0.169 1.169 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.113 0.887 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.143 0.857 30 H 0.122 0.878 31 H 0.130 0.870 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.534 1.889 -6.499 8.146 hybrid contribution -0.347 -0.973 0.956 1.408 sum -4.881 0.916 -5.543 7.442 Atomic orbital electron populations 1.22520 0.95501 1.04997 1.00555 1.21388 0.93819 0.91529 0.85195 1.21782 1.01734 0.94060 1.01889 1.22520 1.00637 1.04042 0.96346 1.86225 1.70617 1.20728 1.42374 1.19911 0.96877 0.84232 0.94023 1.66780 1.14731 1.12972 1.28667 1.21388 1.06562 0.89944 0.99409 1.21367 1.00132 0.99281 0.96148 1.21064 1.06641 0.94390 1.01148 1.17725 0.94239 0.91325 0.92890 1.19341 1.17344 1.16766 0.91053 0.88340 1.26185 0.96891 0.93849 0.96848 1.69697 1.29665 1.36531 1.06435 0.86312 0.83125 0.79438 0.77485 1.19507 1.21526 1.16919 0.93211 0.93037 0.88740 0.92090 0.91527 0.92035 0.88780 0.93007 0.93262 0.85651 0.87836 0.86987 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 8.35 37.16 0.31 -2.83 16 2 C 0.12 2.23 1.11 -90.62 -0.10 2.13 16 3 C -0.14 -2.13 8.84 37.16 0.33 -1.80 16 4 C -0.18 -3.11 8.35 37.15 0.31 -2.80 16 5 O -0.29 -6.83 9.13 -17.87 -0.16 -7.00 16 6 C 0.23 5.77 6.81 -16.23 -0.11 5.65 16 7 N -0.51 -11.38 4.58 -12.62 -0.06 -11.43 16 8 C -0.02 -0.47 11.17 -17.32 -0.19 -0.66 16 9 C -0.15 -3.18 10.08 -39.52 -0.40 -3.58 16 10 C -0.21 -4.98 7.28 -38.61 -0.28 -5.26 16 11 C 0.04 1.14 5.13 -106.52 -0.55 0.59 16 12 C -0.42 -11.40 9.21 -37.84 -0.35 -11.75 16 13 H 0.10 2.88 7.91 -52.49 -0.42 2.46 16 14 C 0.08 2.14 5.42 -17.33 -0.09 2.05 16 15 N -0.80 -21.11 13.93 55.55 0.77 -20.34 16 16 Si 0.91 20.61 24.53 -169.99 -4.17 16.44 16 17 H -0.27 -5.83 6.70 56.52 0.38 -5.45 16 18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.25 -5.78 6.85 56.52 0.39 -5.39 16 20 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.09 1.84 5.58 -51.93 -0.29 1.55 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.09 1.82 5.59 -51.93 -0.29 1.53 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.13 2.23 8.06 -52.49 -0.42 1.80 16 30 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.11 2.63 4.80 -52.49 -0.25 2.38 16 32 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 LS Contribution 259.88 15.07 3.92 3.92 Total: -1.00 -27.67 259.88 -5.05 -32.72 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.22 Total: 3.95 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -1.12 Total: -18.26 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.72 Total: -31.77 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.16 Total: -7.00 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.17 Total: 16.44 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.67 -5.05 -32.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978661.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.134 kcal (2) G-P(sol) polarization free energy of solvation -27.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds