Wall clock time and date at job start Mon Mar 30 2020 03:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46718 * 2 1 4 4 C 1.52994 * 109.47305 * 239.99965 * 2 1 3 5 5 O 1.42898 * 109.47126 * 119.99504 * 2 1 3 6 6 C 1.35392 * 116.99746 * 60.00428 * 5 2 1 7 7 N 1.32039 * 119.88042 * 359.97438 * 6 5 2 8 8 C 1.32031 * 121.89458 * 180.02562 * 7 6 5 9 9 C 1.38636 * 121.41228 * 0.02562 * 8 7 6 10 10 C 1.38016 * 119.57851 * 359.97438 * 9 8 7 11 11 C 1.41023 * 118.26185 * 359.97438 * 10 9 8 12 12 C 1.41127 * 120.69474 * 179.97438 * 11 10 9 13 13 H 1.07995 * 119.99756 * 150.38581 * 12 11 10 14 14 C 1.39957 * 119.99973 * 330.37997 * 12 11 10 15 15 N 1.30848 * 119.99663 * 161.81846 * 14 12 11 16 16 Si 1.86802 * 120.00015 * 341.82710 * 14 12 11 17 17 H 1.48498 * 109.47322 * 95.39804 * 16 14 12 18 18 H 1.48499 * 109.46630 * 215.39738 * 16 14 12 19 19 H 1.48502 * 109.47222 * 335.39046 * 16 14 12 20 20 H 1.08996 * 109.47468 * 299.99924 * 1 2 3 21 21 H 1.09003 * 109.47208 * 60.00683 * 1 2 3 22 22 H 1.09002 * 109.46698 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47149 * 180.02562 * 3 2 1 24 24 H 1.09003 * 109.46723 * 299.99614 * 3 2 1 25 25 H 1.08994 * 109.47459 * 59.99460 * 3 2 1 26 26 H 1.09002 * 109.47041 * 299.99542 * 4 2 1 27 27 H 1.09000 * 109.47413 * 60.00063 * 4 2 1 28 28 H 1.09001 * 109.47038 * 180.02562 * 4 2 1 29 29 H 1.08001 * 119.29084 * 180.27736 * 8 7 6 30 30 H 1.08001 * 120.21232 * 180.02562 * 9 8 7 31 31 H 1.07998 * 120.87101 * 180.02562 * 10 9 8 32 32 H 0.97009 * 119.99777 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0063 -0.6735 1.1668 6 6 1.6426 -1.9686 1.3205 7 7 0.8804 -2.5500 0.4124 8 6 0.5018 -3.8100 0.5226 9 6 0.8874 -4.5885 1.6029 10 6 1.6845 -4.0407 2.5875 11 6 2.0806 -2.6939 2.4534 12 6 2.8950 -2.0818 3.4300 13 1 3.5710 -1.2879 3.1490 14 6 2.8265 -2.5037 4.7627 15 7 3.7961 -2.2126 5.5917 16 14 1.3510 -3.4826 5.3579 17 1 1.6611 -4.9334 5.2943 18 1 1.0387 -3.1041 6.7595 19 1 0.1802 -3.1882 4.4932 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8901 25 1 1.6765 1.9564 0.8899 26 1 1.6768 -1.7489 -1.2491 27 1 1.6768 -0.2074 -2.1392 28 1 3.1300 -0.7216 -1.2489 29 1 -0.1183 -4.2447 -0.2475 30 1 0.5668 -5.6174 1.6733 31 1 1.9975 -4.6282 3.4379 32 1 3.7488 -2.5053 6.5154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259978661.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:01 Heat of formation + Delta-G solvation = -28.734541 kcal Electronic energy + Delta-G solvation = -15427.903655 eV Core-core repulsion = 12967.022860 eV Total energy + Delta-G solvation = -2460.880794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27673 -38.96509 -35.88089 -34.71462 -33.17779 -31.28268 -28.19354 -28.14790 -27.20383 -24.45529 -23.00657 -21.16604 -19.42373 -18.33540 -17.62095 -16.80571 -16.18113 -15.84332 -15.31730 -15.24541 -14.95746 -14.59853 -14.01368 -13.74264 -13.44660 -13.17941 -13.04811 -12.81032 -12.72180 -12.67904 -12.41001 -12.16611 -11.82744 -11.50623 -11.37629 -11.27587 -10.16832 -9.90177 -9.15145 -8.91897 -6.44061 0.63413 0.75432 1.23047 1.36918 1.46010 2.08911 2.55008 2.61678 3.46795 3.83024 4.04007 4.12227 4.20870 4.32876 4.58814 4.60752 4.71173 4.75482 4.85497 4.87962 4.94093 5.03688 5.07160 5.18829 5.21155 5.50195 5.52102 5.60758 5.66778 5.95459 6.20543 6.38105 6.69441 7.01569 7.47007 8.16362 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030621 B = 0.011285 C = 0.009210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.190134 B = 2480.631525 C = 3039.542380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 C -0.133 4.133 4 C -0.171 4.171 5 O -0.320 6.320 6 C 0.220 3.780 7 N -0.503 5.503 8 C -0.002 4.002 9 C -0.154 4.154 10 C -0.206 4.206 11 C 0.014 3.986 12 C -0.458 4.458 13 H 0.054 0.946 14 C 0.046 3.954 15 N -0.844 5.844 16 Si 0.965 3.035 17 H -0.248 1.248 18 H -0.275 1.275 19 H -0.259 1.259 20 H 0.040 0.960 21 H 0.085 0.915 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.171 0.829 30 H 0.147 0.853 31 H 0.115 0.885 32 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.858 -0.011 -8.027 10.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.063 3.937 3 C -0.190 4.190 4 C -0.228 4.228 5 O -0.229 6.229 6 C 0.038 3.962 7 N -0.226 5.226 8 C -0.155 4.155 9 C -0.174 4.174 10 C -0.231 4.231 11 C 0.008 3.992 12 C -0.488 4.488 13 H 0.072 0.928 14 C -0.169 4.169 15 N -0.470 5.470 16 Si 0.788 3.212 17 H -0.173 1.173 18 H -0.201 1.201 19 H -0.183 1.183 20 H 0.059 0.941 21 H 0.104 0.896 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.122 0.878 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.188 0.812 30 H 0.165 0.835 31 H 0.133 0.867 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.807 0.657 -8.345 10.789 hybrid contribution 0.258 -0.606 1.240 1.404 sum -6.549 0.051 -7.105 9.663 Atomic orbital electron populations 1.22440 0.94469 1.04139 1.01819 1.21910 0.94865 0.92742 0.84182 1.21817 1.01445 0.92331 1.03453 1.22436 1.00025 1.03226 0.97116 1.86203 1.71227 1.20623 1.44861 1.20053 0.97150 0.84886 0.94147 1.66999 1.14042 1.13683 1.27883 1.22323 1.04350 0.89187 0.99598 1.21826 0.99097 1.01406 0.95068 1.21332 1.06271 0.93570 1.01932 1.17958 0.95053 0.92590 0.93550 1.19147 1.19210 1.17615 0.92803 0.92813 1.26841 0.98988 0.94784 0.96295 1.69724 1.31259 1.38870 1.07174 0.85489 0.79224 0.79255 0.77231 1.17256 1.20090 1.18343 0.94095 0.89577 0.90515 0.92663 0.87776 0.92585 0.90539 0.89562 0.94188 0.81207 0.83493 0.86699 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.68 8.35 71.98 0.60 -5.08 16 2 C 0.10 3.66 1.11 -10.79 -0.01 3.65 16 3 C -0.13 -3.96 8.84 71.98 0.64 -3.32 16 4 C -0.17 -5.65 8.35 71.98 0.60 -5.05 16 5 O -0.32 -15.46 9.13 -86.85 -0.79 -16.26 16 6 C 0.22 10.92 6.81 85.46 0.58 11.50 16 7 N -0.50 -21.52 4.58 -306.96 -1.41 -22.92 16 8 C 0.00 -0.08 11.17 84.76 0.95 0.87 16 9 C -0.15 -5.98 10.08 22.31 0.22 -5.76 16 10 C -0.21 -9.59 7.28 22.90 0.17 -9.43 16 11 C 0.01 0.72 5.13 -21.09 -0.11 0.61 16 12 C -0.46 -26.63 9.21 23.40 0.22 -26.42 16 13 H 0.05 3.46 7.91 -2.91 -0.02 3.44 16 14 C 0.05 2.48 5.42 85.26 0.46 2.94 16 15 N -0.84 -46.74 13.93 21.83 0.30 -46.44 16 16 Si 0.97 42.58 24.53 68.60 1.68 44.26 16 17 H -0.25 -9.97 6.70 99.48 0.67 -9.31 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.26 -11.85 6.85 99.48 0.68 -11.17 16 20 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 22 H 0.08 2.82 5.58 -2.39 -0.01 2.81 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.08 2.81 5.59 -2.39 -0.01 2.79 16 27 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.17 4.97 8.06 -2.91 -0.02 4.95 16 30 H 0.15 4.45 8.06 -2.91 -0.02 4.42 16 31 H 0.12 5.22 4.80 -2.91 -0.01 5.21 16 32 H 0.30 14.57 8.30 -92.70 -0.77 13.80 16 Total: -1.00 -63.01 259.88 5.14 -57.86 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.04 Total: 18.99 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 4.32 Total: -35.49 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -1.10 Total: -69.36 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.79 Total: -16.26 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.68 Total: 44.26 kcal Total: -63.01 5.14 -57.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978661.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.128 kcal (2) G-P(sol) polarization free energy of solvation -63.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds