Wall clock time and date at job start Mon Mar 30 2020 04:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09011 * 109.47042 * 2 1 4 4 O 1.42900 * 109.47461 * 239.99659 * 2 1 3 5 5 C 1.50697 * 109.47090 * 119.99478 * 2 1 3 6 6 C 1.38257 * 120.00299 * 85.00400 * 5 2 1 7 7 C 1.38206 * 120.00482 * 179.97438 * 6 5 2 8 8 C 1.38263 * 120.00066 * 0.02562 * 7 6 5 9 9 C 1.38214 * 119.99820 * 359.95655 * 8 7 6 10 10 C 1.50697 * 119.99925 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47188 * 200.00157 * 10 9 8 12 12 N 1.46905 * 109.47125 * 319.99935 * 10 9 8 13 13 C 1.50703 * 109.47094 * 79.99863 * 10 9 8 14 14 H 1.08000 * 119.99934 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99701 * 179.97438 * 13 10 9 16 16 N 1.31518 * 119.99846 * 180.02562 * 15 13 10 17 17 Si 1.86793 * 120.00414 * 0.02562 * 15 13 10 18 18 H 1.48499 * 109.47137 * 89.99699 * 17 15 13 19 19 H 1.48497 * 109.47182 * 210.00068 * 17 15 13 20 20 H 1.48502 * 109.47173 * 329.99716 * 17 15 13 21 21 C 1.38222 * 120.00079 * 265.21393 * 5 2 1 22 22 H 1.09003 * 109.47621 * 300.00164 * 1 2 3 23 23 H 1.09003 * 109.47525 * 60.00069 * 1 2 3 24 24 H 1.09001 * 109.47257 * 180.02562 * 1 2 3 25 25 H 0.96700 * 113.99701 * 59.99998 * 4 2 1 26 26 H 1.08002 * 119.99189 * 0.02562 * 6 5 2 27 27 H 1.08004 * 120.00120 * 179.97438 * 7 6 5 28 28 H 1.07997 * 120.00011 * 179.97438 * 8 7 6 29 29 H 1.00901 * 110.99869 * 296.04907 * 12 10 9 30 30 H 1.00896 * 110.99543 * 60.00030 * 12 10 9 31 31 H 0.96996 * 120.00491 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.00125 * 0.04109 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7103 1.2305 6 6 2.1644 -2.0865 1.2288 7 6 2.6256 -2.7379 2.3571 8 6 2.9543 -2.0133 3.4879 9 6 2.8226 -0.6375 3.4895 10 6 3.1815 0.1523 4.7217 11 1 2.6989 1.1288 4.6808 12 7 2.7246 -0.5699 5.9166 13 6 4.6763 0.3330 4.7849 14 1 5.3036 -0.0822 4.0100 15 6 5.2429 1.0292 5.8314 16 7 6.5473 1.1874 5.8863 17 14 4.1578 1.7480 7.1713 18 1 3.9836 0.7491 8.2562 19 1 4.7955 2.9708 7.7219 20 1 2.8315 2.0956 6.6009 21 6 2.3568 0.0137 2.3623 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7210 -0.2702 -1.9979 26 1 1.9080 -2.6524 0.3454 27 1 2.7284 -3.8130 2.3559 28 1 3.3143 -2.5224 4.3697 29 1 1.7186 -0.6474 5.9297 30 1 3.1581 -1.4790 5.9773 31 1 6.9460 1.6775 6.6223 32 1 2.2497 1.0884 2.3651 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260112228.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:19 Heat of formation + Delta-G solvation = -33.213111 kcal Electronic energy + Delta-G solvation = -14762.278622 eV Core-core repulsion = 12301.203622 eV Total energy + Delta-G solvation = -2461.075000 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.28795 -37.10705 -34.69860 -32.03048 -31.64534 -29.86274 -28.67932 -26.28934 -23.73736 -22.56054 -21.31781 -19.20959 -17.14591 -16.84681 -16.24532 -15.09931 -14.89290 -14.57013 -14.14320 -13.92248 -13.56587 -13.04732 -12.69022 -12.35153 -12.29067 -11.96873 -11.79563 -11.34518 -11.10143 -10.67594 -10.47703 -10.23688 -10.01805 -9.78095 -9.28835 -8.53804 -8.30498 -8.00848 -7.64438 -6.00618 -4.11152 1.82368 1.99637 3.56518 3.60776 3.73733 4.16287 4.39234 4.64824 4.89338 5.10887 5.21593 5.25476 5.43973 5.56598 5.64369 5.67960 5.78332 5.90543 6.04448 6.08067 6.19302 6.41587 6.61575 6.81215 6.96922 7.03126 7.30448 7.51204 7.63108 7.65988 8.14280 8.31273 8.68270 9.00134 9.62032 11.08820 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039062 B = 0.007352 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.635673 B = 3807.367190 C = 3905.789676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.144 3.856 3 H 0.063 0.937 4 O -0.563 6.563 5 C -0.091 4.091 6 C -0.115 4.115 7 C -0.126 4.126 8 C -0.115 4.115 9 C -0.066 4.066 10 C 0.215 3.785 11 H 0.049 0.951 12 N -0.840 5.840 13 C -0.517 4.517 14 H 0.071 0.929 15 C 0.081 3.919 16 N -0.899 5.899 17 Si 0.938 3.062 18 H -0.280 1.280 19 H -0.319 1.319 20 H -0.275 1.275 21 C -0.111 4.111 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.374 0.626 26 H 0.116 0.884 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.311 0.689 30 H 0.335 0.665 31 H 0.264 0.736 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.463 -3.550 -9.625 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.086 3.914 3 H 0.080 0.920 4 O -0.368 6.368 5 C -0.091 4.091 6 C -0.133 4.133 7 C -0.144 4.144 8 C -0.134 4.134 9 C -0.068 4.068 10 C 0.106 3.894 11 H 0.067 0.933 12 N -0.370 5.370 13 C -0.555 4.555 14 H 0.089 0.911 15 C -0.123 4.123 16 N -0.536 5.536 17 Si 0.770 3.230 18 H -0.206 1.206 19 H -0.249 1.249 20 H -0.200 1.200 21 C -0.130 4.130 22 H 0.087 0.913 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.220 0.780 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.149 0.851 31 H 0.073 0.927 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.706 -3.271 -8.648 14.917 hybrid contribution -0.969 -0.006 -0.419 1.055 sum -12.675 -3.277 -9.066 15.924 Atomic orbital electron populations 1.22475 0.95951 1.02838 1.02285 1.20530 0.92430 0.94526 0.83945 0.91956 1.86579 1.77075 1.57510 1.15614 1.19462 1.01718 0.94130 0.93788 1.20714 1.01107 0.93820 0.97700 1.21055 1.00461 0.99269 0.93643 1.20986 0.99962 0.94143 0.98296 1.21155 0.93512 0.94317 0.97796 1.18719 0.97324 0.91987 0.81399 0.93297 1.59385 1.09301 1.24782 1.43513 1.20765 0.88251 1.36347 1.10162 0.91064 1.25037 0.94929 0.94519 0.97834 1.69962 1.10515 1.41069 1.32085 0.85842 0.79545 0.76159 0.81425 1.20643 1.24851 1.20022 1.20818 1.00069 0.99421 0.92658 0.91345 0.92439 0.91809 0.77955 0.86619 0.86861 0.86425 0.87804 0.85124 0.92700 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.52 37.15 0.35 -1.53 16 2 C 0.14 1.91 3.79 -27.89 -0.11 1.80 16 3 H 0.06 0.79 8.05 -51.92 -0.42 0.37 16 4 O -0.56 -7.18 12.47 -35.23 -0.44 -7.62 16 5 C -0.09 -1.52 5.00 -104.62 -0.52 -2.04 16 6 C -0.12 -1.91 9.35 -39.59 -0.37 -2.28 16 7 C -0.13 -2.12 10.05 -39.58 -0.40 -2.51 16 8 C -0.12 -2.17 9.29 -39.58 -0.37 -2.54 16 9 C -0.07 -1.34 4.88 -104.62 -0.51 -1.85 16 10 C 0.21 4.97 2.34 -70.01 -0.16 4.81 16 11 H 0.05 1.17 7.06 -51.93 -0.37 0.80 16 12 N -0.84 -17.56 6.59 -6.65 -0.04 -17.60 16 13 C -0.52 -14.58 9.28 -34.44 -0.32 -14.90 16 14 H 0.07 2.23 7.98 -52.49 -0.42 1.81 16 15 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 16 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 17 Si 0.94 23.91 26.03 -169.99 -4.42 19.49 16 18 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.32 -8.21 7.11 56.52 0.40 -7.81 16 20 H -0.27 -6.77 6.54 56.52 0.37 -6.40 16 21 C -0.11 -2.07 9.31 -39.58 -0.37 -2.44 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.37 2.86 9.08 45.56 0.41 3.27 16 26 H 0.12 1.75 7.63 -52.49 -0.40 1.35 16 27 H 0.11 1.60 8.06 -52.48 -0.42 1.17 16 28 H 0.12 2.13 6.66 -52.49 -0.35 1.78 16 29 H 0.31 5.58 9.06 -39.29 -0.36 5.22 16 30 H 0.33 6.69 7.34 -39.29 -0.29 6.41 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.12 2.06 8.04 -52.49 -0.42 1.64 16 LS Contribution 269.78 15.07 4.07 4.07 Total: -1.00 -32.72 269.78 -6.40 -39.13 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -3.46 Total: 10.87 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.87 Total: -21.23 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.73 Total: -44.70 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.44 Total: -7.62 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -4.42 Total: 19.49 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.72 -6.40 -39.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260112228.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.914 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds