Wall clock time and date at job start Mon Mar 30 2020 04:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09011 * 109.47042 * 2 1 4 4 O 1.42900 * 109.47461 * 239.99659 * 2 1 3 5 5 C 1.50697 * 109.47090 * 119.99478 * 2 1 3 6 6 C 1.38257 * 120.00299 * 85.00400 * 5 2 1 7 7 C 1.38206 * 120.00482 * 179.97438 * 6 5 2 8 8 C 1.38263 * 120.00066 * 0.02562 * 7 6 5 9 9 C 1.38214 * 119.99820 * 359.95655 * 8 7 6 10 10 C 1.50697 * 119.99925 * 180.02562 * 9 8 7 11 11 H 1.08996 * 109.47188 * 200.00157 * 10 9 8 12 12 N 1.46905 * 109.47125 * 319.99935 * 10 9 8 13 13 C 1.50703 * 109.47094 * 79.99863 * 10 9 8 14 14 H 1.08000 * 119.99934 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99701 * 179.97438 * 13 10 9 16 16 N 1.31518 * 119.99846 * 180.02562 * 15 13 10 17 17 Si 1.86793 * 120.00414 * 0.02562 * 15 13 10 18 18 H 1.48499 * 109.47137 * 89.99699 * 17 15 13 19 19 H 1.48497 * 109.47182 * 210.00068 * 17 15 13 20 20 H 1.48502 * 109.47173 * 329.99716 * 17 15 13 21 21 C 1.38222 * 120.00079 * 265.21393 * 5 2 1 22 22 H 1.09003 * 109.47621 * 300.00164 * 1 2 3 23 23 H 1.09003 * 109.47525 * 60.00069 * 1 2 3 24 24 H 1.09001 * 109.47257 * 180.02562 * 1 2 3 25 25 H 0.96700 * 113.99701 * 59.99998 * 4 2 1 26 26 H 1.08002 * 119.99189 * 0.02562 * 6 5 2 27 27 H 1.08004 * 120.00120 * 179.97438 * 7 6 5 28 28 H 1.07997 * 120.00011 * 179.97438 * 8 7 6 29 29 H 1.00901 * 110.99869 * 296.04907 * 12 10 9 30 30 H 1.00896 * 110.99543 * 60.00030 * 12 10 9 31 31 H 0.96996 * 120.00491 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.00125 * 0.04109 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7103 1.2305 6 6 2.1644 -2.0865 1.2288 7 6 2.6256 -2.7379 2.3571 8 6 2.9543 -2.0133 3.4879 9 6 2.8226 -0.6375 3.4895 10 6 3.1815 0.1523 4.7217 11 1 2.6989 1.1288 4.6808 12 7 2.7246 -0.5699 5.9166 13 6 4.6763 0.3330 4.7849 14 1 5.3036 -0.0822 4.0100 15 6 5.2429 1.0292 5.8314 16 7 6.5473 1.1874 5.8863 17 14 4.1578 1.7480 7.1713 18 1 3.9836 0.7491 8.2562 19 1 4.7955 2.9708 7.7219 20 1 2.8315 2.0956 6.6009 21 6 2.3568 0.0137 2.3623 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.7210 -0.2702 -1.9979 26 1 1.9080 -2.6524 0.3454 27 1 2.7284 -3.8130 2.3559 28 1 3.3143 -2.5224 4.3697 29 1 1.7186 -0.6474 5.9297 30 1 3.1581 -1.4790 5.9773 31 1 6.9460 1.6775 6.6223 32 1 2.2497 1.0884 2.3651 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260112228.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:19 Heat of formation + Delta-G solvation = -58.408742 kcal Electronic energy + Delta-G solvation = -14763.371187 eV Core-core repulsion = 12301.203622 eV Total energy + Delta-G solvation = -2462.167564 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.62855 -38.25194 -36.35879 -34.02272 -32.94328 -31.28424 -29.83961 -28.30690 -25.00245 -24.13806 -22.71038 -20.70288 -18.98904 -18.11219 -17.65492 -16.79426 -16.29393 -15.99724 -15.72051 -15.31721 -14.98527 -14.53164 -14.23568 -13.77855 -13.63351 -13.45468 -13.00606 -12.79915 -12.67394 -12.48243 -12.01553 -11.66826 -11.62187 -11.37735 -11.05841 -10.76785 -9.65804 -9.58005 -9.25964 -8.25828 -6.39699 0.46334 0.57466 1.50276 1.57404 1.71076 2.51851 2.86296 3.08771 3.35149 3.87658 4.03906 4.12215 4.17713 4.22787 4.32525 4.34377 4.60662 4.71192 4.80343 4.91080 4.99448 5.18642 5.22681 5.25990 5.51410 5.60168 5.69046 5.84475 6.10286 6.17764 6.45909 6.74349 6.93103 6.97832 7.37094 8.87609 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039062 B = 0.007352 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.635673 B = 3807.367190 C = 3905.789676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.144 3.856 3 H 0.066 0.934 4 O -0.578 6.578 5 C -0.092 4.092 6 C -0.116 4.116 7 C -0.123 4.123 8 C -0.130 4.130 9 C -0.092 4.092 10 C 0.225 3.775 11 H 0.043 0.957 12 N -0.842 5.842 13 C -0.516 4.516 14 H 0.025 0.975 15 C 0.026 3.974 16 N -0.949 5.949 17 Si 1.004 2.996 18 H -0.276 1.276 19 H -0.323 1.323 20 H -0.259 1.259 21 C -0.126 4.126 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.060 0.940 25 H 0.397 0.603 26 H 0.134 0.866 27 H 0.142 0.858 28 H 0.118 0.882 29 H 0.333 0.667 30 H 0.340 0.660 31 H 0.265 0.735 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.797 -3.978 -10.488 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.086 3.914 3 H 0.084 0.916 4 O -0.387 6.387 5 C -0.092 4.092 6 C -0.134 4.134 7 C -0.141 4.141 8 C -0.148 4.148 9 C -0.094 4.094 10 C 0.115 3.885 11 H 0.061 0.939 12 N -0.373 5.373 13 C -0.554 4.554 14 H 0.043 0.957 15 C -0.173 4.173 16 N -0.589 5.589 17 Si 0.834 3.166 18 H -0.202 1.202 19 H -0.253 1.253 20 H -0.184 1.184 21 C -0.145 4.145 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.079 0.921 25 H 0.247 0.753 26 H 0.152 0.848 27 H 0.160 0.840 28 H 0.136 0.864 29 H 0.146 0.854 30 H 0.155 0.845 31 H 0.074 0.926 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.074 -3.708 -9.540 17.402 hybrid contribution -0.231 0.049 -0.311 0.390 sum -14.305 -3.659 -9.851 17.750 Atomic orbital electron populations 1.22398 0.93673 1.03059 1.03587 1.20505 0.94031 0.93981 0.82891 0.91614 1.86505 1.77543 1.58051 1.16612 1.19860 1.00296 0.94526 0.94558 1.21030 1.00236 0.94004 0.98161 1.21369 0.99200 1.00722 0.92815 1.21076 1.00699 0.93706 0.99349 1.20972 0.95889 0.95013 0.97527 1.18350 0.93808 0.92667 0.83705 0.93894 1.59078 1.11012 1.25011 1.42215 1.20985 0.90868 1.35146 1.08418 0.95709 1.25903 0.95958 0.95167 1.00297 1.70094 1.12500 1.42925 1.33334 0.84789 0.78191 0.75172 0.78490 1.20157 1.25314 1.18380 1.20935 1.00689 0.99818 0.93032 0.91649 0.89588 0.92084 0.75276 0.84778 0.84006 0.86413 0.85366 0.84546 0.92618 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.52 71.98 0.68 -2.39 16 2 C 0.14 3.46 3.79 29.84 0.11 3.58 16 3 H 0.07 1.53 8.05 -2.38 -0.02 1.51 16 4 O -0.58 -13.07 12.47 -148.98 -1.86 -14.93 16 5 C -0.09 -2.93 5.00 -19.86 -0.10 -3.03 16 6 C -0.12 -3.59 9.35 22.27 0.21 -3.38 16 7 C -0.12 -3.89 10.05 22.27 0.22 -3.67 16 8 C -0.13 -4.80 9.29 22.27 0.21 -4.59 16 9 C -0.09 -3.75 4.88 -19.87 -0.10 -3.85 16 10 C 0.22 10.36 2.34 43.42 0.10 10.47 16 11 H 0.04 2.03 7.06 -2.39 -0.02 2.01 16 12 N -0.84 -34.09 6.59 -174.95 -1.15 -35.25 16 13 C -0.52 -29.86 9.28 25.60 0.24 -29.62 16 14 H 0.02 1.62 7.98 -2.91 -0.02 1.60 16 15 C 0.03 1.52 5.47 84.65 0.46 1.98 16 16 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 17 Si 1.00 49.49 26.03 68.60 1.79 51.27 16 18 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 19 H -0.32 -16.02 7.11 99.48 0.71 -15.31 16 20 H -0.26 -11.99 6.54 99.48 0.65 -11.34 16 21 C -0.13 -4.64 9.31 22.27 0.21 -4.43 16 22 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.40 4.76 9.08 -74.06 -0.67 4.08 16 26 H 0.13 3.64 7.63 -2.91 -0.02 3.62 16 27 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 28 H 0.12 4.22 6.66 -2.91 -0.02 4.20 16 29 H 0.33 11.26 9.06 -89.69 -0.81 10.44 16 30 H 0.34 13.31 7.34 -89.70 -0.66 12.65 16 31 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 32 H 0.12 4.20 8.04 -2.91 -0.02 4.18 16 Total: -1.00 -71.27 269.78 0.27 -71.00 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: -1.06 Total: 27.13 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 2.25 Total: -38.93 kcal Atomic # 7 Polarization: -94.69 SS G_CDS: -0.85 Total: -95.54 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -1.86 Total: -14.93 kcal Atomic # 14 Polarization: 49.49 SS G_CDS: 1.79 Total: 51.27 kcal Total: -71.27 0.27 -71.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260112228.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.591 kcal (2) G-P(sol) polarization free energy of solvation -71.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds