Wall clock time and date at job start Mon Mar 30 2020 02:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 109.91087 * 2 1 4 4 C 1.34512 * 125.79226 * 88.89474 * 3 2 1 5 5 C 1.41379 * 106.84086 * 179.97438 * 4 3 2 6 6 C 1.34512 * 106.84332 * 0.02562 * 5 4 3 7 7 O 1.34301 * 108.41872 * 359.97438 * 6 5 4 8 8 N 1.47903 * 110.07673 * 121.21060 * 2 1 3 9 9 C 1.48534 * 105.81866 * 144.77544 * 8 2 1 10 10 C 1.54942 * 103.22778 * 320.78573 * 9 8 2 11 11 C 1.54002 * 109.91467 * 238.89359 * 2 1 3 12 12 H 1.08997 * 110.30487 * 120.31257 * 11 2 1 13 13 C 1.50696 * 110.30767 * 358.14436 * 11 2 1 14 14 H 1.08004 * 120.00485 * 0.02562 * 13 11 2 15 15 C 1.37876 * 120.00081 * 179.97438 * 13 11 2 16 16 N 1.31506 * 120.00442 * 180.02562 * 15 13 11 17 17 Si 1.86801 * 119.99707 * 359.97438 * 15 13 11 18 18 H 1.48500 * 109.47125 * 90.00032 * 17 15 13 19 19 H 1.48502 * 109.47357 * 209.99910 * 17 15 13 20 20 H 1.48504 * 109.47145 * 329.99931 * 17 15 13 21 21 H 1.09003 * 109.46981 * 60.70057 * 1 2 3 22 22 H 1.08995 * 109.47371 * 180.69990 * 1 2 3 23 23 H 1.09002 * 109.46989 * 300.70630 * 1 2 3 24 24 H 1.07997 * 126.57601 * 0.02562 * 4 3 2 25 25 H 1.08007 * 126.57604 * 180.02562 * 5 4 3 26 26 H 1.08004 * 125.79431 * 180.02562 * 6 5 4 27 27 H 1.00906 * 110.99722 * 265.27764 * 8 2 1 28 28 H 1.09004 * 110.66645 * 202.35599 * 9 8 2 29 29 H 1.08999 * 110.81579 * 79.29012 * 9 8 2 30 30 H 1.08998 * 110.72504 * 279.06041 * 10 9 8 31 31 H 1.08992 * 110.87777 * 155.84004 * 10 9 8 32 32 H 0.97005 * 120.00216 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0432 1.4169 0.0000 4 6 2.2913 2.1637 1.0909 5 6 2.7556 3.4177 0.6318 6 6 2.7629 3.3624 -0.7121 7 8 2.3307 2.1481 -1.0892 8 7 2.0377 -0.7198 1.1881 9 6 3.2732 -1.4142 0.7435 10 6 2.9100 -1.9077 -0.6796 11 6 2.0546 -0.7480 -1.2397 12 1 2.6685 -0.0854 -1.8497 13 6 0.9046 -1.2898 -2.0491 14 1 -0.1113 -1.1237 -1.7224 15 6 1.1494 -1.9968 -3.2072 16 7 0.1460 -2.4692 -3.9138 17 14 2.9065 -2.2824 -3.7734 18 1 3.4158 -3.5484 -3.1876 19 1 2.9405 -2.3738 -5.2552 20 1 3.7602 -1.1520 -3.3275 21 1 -0.3633 0.5029 -0.8962 22 1 -0.3634 -1.0275 0.0126 23 1 -0.3633 0.5248 0.8836 24 1 2.1616 1.8628 2.1199 25 1 3.0483 4.2587 1.2431 26 1 3.0659 4.1591 -1.3755 27 1 2.2347 -0.0790 1.9423 28 1 3.4973 -2.2571 1.3973 29 1 4.1148 -0.7224 0.7076 30 1 2.3281 -2.8281 -0.6319 31 1 3.8070 -2.0509 -1.2819 32 1 0.3182 -2.9669 -4.7284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260185068.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:04 Heat of formation + Delta-G solvation = 7.570345 kcal Electronic energy + Delta-G solvation = -15674.902822 eV Core-core repulsion = 13215.596326 eV Total energy + Delta-G solvation = -2459.306496 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.54162 -39.95724 -34.88555 -33.89869 -32.95195 -31.75651 -29.49889 -27.10803 -25.62994 -23.03432 -22.47769 -21.63410 -20.21586 -18.92904 -18.40678 -17.01918 -16.75321 -16.31384 -15.62082 -15.31806 -15.18079 -14.25501 -14.17193 -13.65742 -13.53484 -13.43961 -13.16549 -13.04143 -12.58285 -12.39904 -12.22601 -11.77275 -11.56951 -11.39094 -10.88356 -10.75268 -10.69727 -9.68702 -9.32935 -8.22799 -6.24340 0.86111 1.29782 1.33457 1.41863 1.74012 2.17465 2.35663 3.09406 3.26723 3.78434 3.93121 4.11423 4.16401 4.25767 4.33438 4.49640 4.72504 4.78111 4.87169 4.95517 5.01627 5.03261 5.10530 5.18910 5.27834 5.35971 5.50359 5.65663 5.71738 5.91913 6.29264 6.39049 6.50922 6.81612 7.39117 8.91711 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030972 B = 0.011131 C = 0.010463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.822380 B = 2514.806100 C = 2675.542149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.183 3.817 3 C -0.035 4.035 4 C -0.222 4.222 5 C -0.213 4.213 6 C -0.062 4.062 7 O -0.198 6.198 8 N -0.642 5.642 9 C 0.046 3.954 10 C -0.134 4.134 11 C 0.010 3.990 12 H 0.021 0.979 13 C -0.510 4.510 14 H 0.070 0.930 15 C 0.017 3.983 16 N -0.948 5.948 17 Si 0.928 3.072 18 H -0.262 1.262 19 H -0.295 1.295 20 H -0.258 1.258 21 H 0.039 0.961 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.167 0.833 25 H 0.178 0.822 26 H 0.231 0.769 27 H 0.345 0.655 28 H 0.103 0.897 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 9.143 10.527 16.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.092 3.908 3 C -0.087 4.087 4 C -0.242 4.242 5 C -0.232 4.232 6 C -0.129 4.129 7 O -0.093 6.093 8 N -0.274 5.274 9 C -0.083 4.083 10 C -0.172 4.172 11 C -0.009 4.009 12 H 0.039 0.961 13 C -0.548 4.548 14 H 0.088 0.912 15 C -0.180 4.180 16 N -0.589 5.589 17 Si 0.754 3.246 18 H -0.187 1.187 19 H -0.223 1.223 20 H -0.183 1.183 21 H 0.058 0.942 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.184 0.816 25 H 0.195 0.805 26 H 0.248 0.752 27 H 0.164 0.836 28 H 0.121 0.879 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.597 8.363 10.069 15.134 hybrid contribution 1.090 0.517 -0.882 1.494 sum 8.687 8.880 9.188 15.451 Atomic orbital electron populations 1.21525 0.92433 1.01634 0.99598 1.20007 0.95617 0.83218 0.91965 1.23610 1.04045 0.96192 0.84851 1.21786 1.07913 0.94987 0.99477 1.22112 1.06909 0.99453 0.94699 1.24876 1.03740 0.86795 0.97464 1.84115 1.64763 1.24250 1.36195 1.63361 1.28480 1.29346 1.06182 1.23029 0.90846 0.98665 0.95776 1.22875 0.98418 0.99891 0.96035 1.19965 0.94882 0.93334 0.92738 0.96134 1.21673 0.94259 1.32330 1.06505 0.91205 1.25699 1.00058 0.95522 0.96673 1.70017 1.32820 1.39047 1.17012 0.86110 0.82108 0.79718 0.76671 1.18729 1.22251 1.18294 0.94156 0.92258 0.92471 0.81587 0.80491 0.75239 0.83648 0.87930 0.93641 0.91917 0.92965 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.92 7.32 71.98 0.53 -3.39 16 2 C 0.18 7.36 1.10 2.93 0.00 7.37 16 3 C -0.03 -1.28 5.83 24.83 0.14 -1.13 16 4 C -0.22 -6.44 9.92 22.19 0.22 -6.22 16 5 C -0.21 -5.33 10.91 22.19 0.24 -5.09 16 6 C -0.06 -1.71 12.09 66.97 0.81 -0.90 16 7 O -0.20 -7.61 9.74 -2.47 -0.02 -7.64 16 8 N -0.64 -21.70 7.02 -462.75 -3.25 -24.95 16 9 C 0.05 1.49 7.53 86.65 0.65 2.15 16 10 C -0.13 -5.63 4.95 31.80 0.16 -5.47 16 11 C 0.01 0.49 2.02 -10.66 -0.02 0.47 16 12 H 0.02 1.05 5.98 -2.39 -0.01 1.04 16 13 C -0.51 -28.86 8.09 25.60 0.21 -28.65 16 14 H 0.07 4.23 4.94 -2.91 -0.01 4.21 16 15 C 0.02 1.01 5.46 84.66 0.46 1.47 16 16 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 17 Si 0.93 45.52 24.86 68.60 1.71 47.23 16 18 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 19 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 20 H -0.26 -12.19 6.41 99.48 0.64 -11.56 16 21 H 0.04 1.83 7.25 -2.39 -0.02 1.81 16 22 H 0.06 2.68 6.97 -2.39 -0.02 2.66 16 23 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.17 3.86 7.09 -2.91 -0.02 3.84 16 25 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 26 H 0.23 4.26 8.06 -2.91 -0.02 4.24 16 27 H 0.34 9.50 6.72 -89.69 -0.60 8.90 16 28 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 2.83 7.86 -2.39 -0.02 2.82 16 31 H 0.05 2.13 6.17 -2.39 -0.01 2.11 16 32 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 Total: -1.00 -67.73 253.24 2.59 -65.14 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.46 Total: 18.85 kcal Atomic # 6 Polarization: -42.81 SS G_CDS: 3.40 Total: -39.40 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -2.95 Total: -84.18 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -0.02 Total: -7.64 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.71 Total: 47.23 kcal Total: -67.73 2.59 -65.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260185068.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.709 kcal (2) G-P(sol) polarization free energy of solvation -67.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds