Wall clock time and date at job start Mon Mar 30 2020 02:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 110.07031 * 2 1 4 4 C 1.34514 * 125.78546 * 270.91791 * 3 2 1 5 5 C 1.41382 * 106.83482 * 179.88809 * 4 3 2 6 6 C 1.34514 * 106.84496 * 0.37304 * 5 4 3 7 7 O 1.34299 * 125.78906 * 91.22507 * 3 2 1 8 8 N 1.48121 * 109.99710 * 238.70100 * 2 1 3 9 9 C 1.48535 * 105.86486 * 215.42147 * 8 2 1 10 10 C 1.54930 * 103.23135 * 39.17340 * 9 8 2 11 11 C 1.53992 * 109.91163 * 121.20715 * 2 1 3 12 12 H 1.09011 * 110.30839 * 239.48772 * 11 2 1 13 13 C 1.50701 * 110.31450 * 1.55798 * 11 2 1 14 14 H 1.08004 * 119.99699 * 3.34838 * 13 11 2 15 15 C 1.37880 * 120.00482 * 183.35636 * 13 11 2 16 16 N 1.31516 * 119.99677 * 6.76204 * 15 13 11 17 17 Si 1.86796 * 119.99888 * 186.76596 * 15 13 11 18 18 H 1.48506 * 109.47178 * 94.79219 * 17 15 13 19 19 H 1.48500 * 109.47074 * 214.78929 * 17 15 13 20 20 H 1.48499 * 109.47461 * 334.79496 * 17 15 13 21 21 H 1.08994 * 109.46884 * 298.80112 * 1 2 3 22 22 H 1.09003 * 109.46600 * 58.79336 * 1 2 3 23 23 H 1.08998 * 109.47579 * 178.79642 * 1 2 3 24 24 H 1.07997 * 126.58215 * 0.02562 * 4 3 2 25 25 H 1.08002 * 126.57903 * 180.11856 * 5 4 3 26 26 H 1.08002 * 125.79288 * 179.78591 * 6 5 4 27 27 H 1.00904 * 111.00353 * 94.87586 * 8 2 1 28 28 H 1.09005 * 110.66553 * 280.73671 * 9 8 2 29 29 H 1.09000 * 110.81030 * 157.67970 * 9 8 2 30 30 H 1.08998 * 110.72588 * 204.22887 * 10 9 8 31 31 H 1.09004 * 110.72738 * 80.94080 * 10 9 8 32 32 H 0.96997 * 119.99319 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0472 1.4155 0.0000 4 6 2.3007 2.1603 -1.0911 5 6 2.7640 3.4146 -0.6319 6 6 2.7738 3.3585 0.7120 7 8 2.3386 2.1452 1.0892 8 7 2.0366 -0.7231 -1.1893 9 6 3.2696 -1.4221 -0.7450 10 6 2.9052 -1.9134 0.6785 11 6 2.0545 -0.7502 1.2384 12 1 2.6714 -0.0896 1.8478 13 6 0.9044 -1.2872 2.0507 14 1 -0.1092 -1.1642 1.6987 15 6 1.1460 -1.9354 3.2434 16 7 2.3640 -1.9693 3.7383 17 14 -0.2565 -2.7656 4.1561 18 1 -0.3046 -4.2034 3.7876 19 1 -0.0398 -2.6366 5.6195 20 1 -1.5402 -2.1168 3.7867 21 1 -0.3633 0.4951 0.9005 22 1 -0.3632 0.5325 -0.8790 23 1 -0.3634 -1.0274 -0.0216 24 1 2.1726 1.8588 -2.1202 25 1 3.0580 4.2552 -1.2431 26 1 3.0795 4.1541 1.3753 27 1 2.2355 -0.0834 -1.9440 28 1 4.1119 -0.7311 -0.7096 29 1 3.4930 -2.2659 -1.3978 30 1 3.8037 -2.0577 1.2785 31 1 2.3197 -2.8316 0.6316 32 1 2.5339 -2.4250 4.5776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260185071.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:08 Heat of formation + Delta-G solvation = 22.789968 kcal Electronic energy + Delta-G solvation = -15601.229564 eV Core-core repulsion = 13142.583040 eV Total energy + Delta-G solvation = -2458.646524 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.12426 -38.10624 -32.96224 -32.33477 -31.29184 -29.32437 -28.01220 -25.05981 -24.03724 -21.47443 -21.09602 -19.73715 -18.66383 -17.24731 -16.03608 -15.48208 -15.22718 -14.47826 -13.98120 -13.72531 -13.07260 -12.55434 -12.35019 -12.16819 -12.01613 -11.65264 -11.34909 -10.98551 -10.84204 -10.64272 -10.41773 -9.91103 -9.70034 -9.52810 -9.31320 -8.70118 -8.35571 -8.11114 -7.93376 -5.99040 -3.98780 2.25410 3.02008 3.33381 3.40654 3.43327 3.53282 4.47151 4.87027 5.16133 5.34938 5.39905 5.46570 5.79052 5.95657 6.10176 6.17424 6.20028 6.28412 6.41383 6.50202 6.62797 6.74101 6.86776 7.08905 7.12189 7.16723 7.32803 7.52722 7.73744 7.90683 7.93825 8.02764 8.42935 9.01141 9.64092 11.11979 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032626 B = 0.010144 C = 0.009276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.002816 B = 2759.656567 C = 3017.876424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.167 3.833 3 C 0.014 3.986 4 C -0.245 4.245 5 C -0.216 4.216 6 C -0.060 4.060 7 O -0.156 6.156 8 N -0.646 5.646 9 C 0.028 3.972 10 C -0.099 4.099 11 C 0.052 3.948 12 H 0.043 0.957 13 C -0.516 4.516 14 H 0.075 0.925 15 C 0.063 3.937 16 N -0.890 5.890 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.273 1.273 21 H 0.063 0.937 22 H 0.028 0.972 23 H 0.077 0.923 24 H 0.141 0.859 25 H 0.140 0.860 26 H 0.195 0.805 27 H 0.323 0.677 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 6.361 -7.440 9.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.076 3.924 3 C -0.039 4.039 4 C -0.265 4.265 5 C -0.235 4.235 6 C -0.128 4.128 7 O -0.050 6.050 8 N -0.276 5.276 9 C -0.101 4.101 10 C -0.138 4.138 11 C 0.033 3.967 12 H 0.061 0.939 13 C -0.554 4.554 14 H 0.093 0.907 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.198 1.198 21 H 0.082 0.918 22 H 0.047 0.953 23 H 0.096 0.904 24 H 0.158 0.842 25 H 0.158 0.842 26 H 0.212 0.788 27 H 0.139 0.861 28 H 0.046 0.954 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.438 5.610 -6.952 8.944 hybrid contribution 0.217 0.594 0.398 0.747 sum 0.655 6.204 -6.554 9.048 Atomic orbital electron populations 1.21673 0.92185 1.02604 0.99514 1.20612 0.95725 0.82282 0.93811 1.23864 1.00151 0.96175 0.83726 1.21411 1.10795 0.95046 0.99210 1.21664 1.08004 0.99103 0.94742 1.23975 1.05200 0.87728 0.95891 1.84185 1.63338 1.22430 1.34999 1.63464 1.28779 1.28731 1.06594 1.23174 0.90470 0.97247 0.99166 1.22518 0.99749 1.00408 0.91080 1.19557 0.95516 0.92250 0.89361 0.93851 1.21473 0.93289 1.36044 1.04591 0.90738 1.24992 0.95407 0.96437 0.97066 1.69995 1.19906 1.42990 1.19951 0.86639 0.82806 0.80013 0.78916 1.20774 1.21472 1.19804 0.91775 0.95314 0.90375 0.84151 0.84202 0.78841 0.86103 0.95415 0.91294 0.92358 0.91736 0.93174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.08 7.32 37.16 0.27 -1.80 16 2 C 0.17 3.53 1.10 -131.56 -0.15 3.38 16 3 C 0.01 0.29 5.84 -35.63 -0.21 0.08 16 4 C -0.25 -4.21 9.92 -39.70 -0.39 -4.60 16 5 C -0.22 -3.33 10.91 -39.70 -0.43 -3.77 16 6 C -0.06 -0.97 12.09 29.42 0.36 -0.61 16 7 O -0.16 -3.25 9.74 5.72 0.06 -3.19 16 8 N -0.65 -12.30 7.02 -97.48 -0.68 -12.98 16 9 C 0.03 0.55 7.53 -1.90 -0.01 0.53 16 10 C -0.10 -2.30 6.14 -24.87 -0.15 -2.46 16 11 C 0.05 1.30 2.36 -90.41 -0.21 1.09 16 12 H 0.04 1.22 7.02 -51.92 -0.36 0.86 16 13 C -0.52 -13.82 7.46 -34.44 -0.26 -14.07 16 14 H 0.07 1.93 4.72 -52.48 -0.25 1.68 16 15 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 16 N -0.89 -25.64 13.00 55.43 0.72 -24.92 16 17 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 21 H 0.06 1.36 7.26 -51.93 -0.38 0.98 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.08 1.63 6.96 -51.93 -0.36 1.27 16 24 H 0.14 2.09 7.09 -52.49 -0.37 1.72 16 25 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 26 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 27 H 0.32 5.38 6.73 -39.29 -0.26 5.12 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.06 1.58 7.86 -51.93 -0.41 1.17 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 261.26 15.07 3.94 3.94 Total: -1.00 -29.31 261.26 -6.34 -35.66 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.07 Total: 5.89 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -1.28 Total: -20.60 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.04 Total: -37.91 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: 0.06 Total: -3.19 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.31 -6.34 -35.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260185071.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.450 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds