Wall clock time and date at job start Mon Mar 30 2020 02:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 110.07031 * 2 1 4 4 C 1.34514 * 125.78546 * 270.91791 * 3 2 1 5 5 C 1.41382 * 106.83482 * 179.88809 * 4 3 2 6 6 C 1.34514 * 106.84496 * 0.37304 * 5 4 3 7 7 O 1.34299 * 125.78906 * 91.22507 * 3 2 1 8 8 N 1.48121 * 109.99710 * 238.70100 * 2 1 3 9 9 C 1.48535 * 105.86486 * 215.42147 * 8 2 1 10 10 C 1.54930 * 103.23135 * 39.17340 * 9 8 2 11 11 C 1.53992 * 109.91163 * 121.20715 * 2 1 3 12 12 H 1.09011 * 110.30839 * 239.48772 * 11 2 1 13 13 C 1.50701 * 110.31450 * 1.55798 * 11 2 1 14 14 H 1.08004 * 119.99699 * 3.34838 * 13 11 2 15 15 C 1.37880 * 120.00482 * 183.35636 * 13 11 2 16 16 N 1.31516 * 119.99677 * 6.76204 * 15 13 11 17 17 Si 1.86796 * 119.99888 * 186.76596 * 15 13 11 18 18 H 1.48506 * 109.47178 * 94.79219 * 17 15 13 19 19 H 1.48500 * 109.47074 * 214.78929 * 17 15 13 20 20 H 1.48499 * 109.47461 * 334.79496 * 17 15 13 21 21 H 1.08994 * 109.46884 * 298.80112 * 1 2 3 22 22 H 1.09003 * 109.46600 * 58.79336 * 1 2 3 23 23 H 1.08998 * 109.47579 * 178.79642 * 1 2 3 24 24 H 1.07997 * 126.58215 * 0.02562 * 4 3 2 25 25 H 1.08002 * 126.57903 * 180.11856 * 5 4 3 26 26 H 1.08002 * 125.79288 * 179.78591 * 6 5 4 27 27 H 1.00904 * 111.00353 * 94.87586 * 8 2 1 28 28 H 1.09005 * 110.66553 * 280.73671 * 9 8 2 29 29 H 1.09000 * 110.81030 * 157.67970 * 9 8 2 30 30 H 1.08998 * 110.72588 * 204.22887 * 10 9 8 31 31 H 1.09004 * 110.72738 * 80.94080 * 10 9 8 32 32 H 0.96997 * 119.99319 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0472 1.4155 0.0000 4 6 2.3007 2.1603 -1.0911 5 6 2.7640 3.4146 -0.6319 6 6 2.7738 3.3585 0.7120 7 8 2.3386 2.1452 1.0892 8 7 2.0366 -0.7231 -1.1893 9 6 3.2696 -1.4221 -0.7450 10 6 2.9052 -1.9134 0.6785 11 6 2.0545 -0.7502 1.2384 12 1 2.6714 -0.0896 1.8478 13 6 0.9044 -1.2872 2.0507 14 1 -0.1092 -1.1642 1.6987 15 6 1.1460 -1.9354 3.2434 16 7 2.3640 -1.9693 3.7383 17 14 -0.2565 -2.7656 4.1561 18 1 -0.3046 -4.2034 3.7876 19 1 -0.0398 -2.6366 5.6195 20 1 -1.5402 -2.1168 3.7867 21 1 -0.3633 0.4951 0.9005 22 1 -0.3632 0.5325 -0.8790 23 1 -0.3634 -1.0274 -0.0216 24 1 2.1726 1.8588 -2.1202 25 1 3.0580 4.2552 -1.2431 26 1 3.0795 4.1541 1.3753 27 1 2.2355 -0.0834 -1.9440 28 1 4.1119 -0.7311 -0.7096 29 1 3.4930 -2.2659 -1.3978 30 1 3.8037 -2.0577 1.2785 31 1 2.3197 -2.8316 0.6316 32 1 2.5339 -2.4250 4.5776 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260185071.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:08 Heat of formation + Delta-G solvation = 3.291122 kcal Electronic energy + Delta-G solvation = -15602.075097 eV Core-core repulsion = 13142.583040 eV Total energy + Delta-G solvation = -2459.492057 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.50174 -39.78172 -34.86984 -33.82195 -32.88595 -31.15196 -29.45001 -26.93018 -25.81595 -22.94618 -22.49963 -21.44663 -20.25530 -18.73438 -18.04072 -16.97447 -16.71078 -16.39583 -15.65455 -15.21259 -14.72572 -14.19355 -13.82885 -13.74885 -13.49177 -13.41010 -12.95024 -12.81326 -12.60935 -12.47783 -12.14479 -11.77898 -11.60963 -11.16025 -10.79390 -10.68021 -10.44810 -9.65711 -9.29480 -8.09988 -6.15018 0.89601 1.42076 1.43356 1.53132 1.75667 2.22625 2.46209 3.22555 3.33689 3.83752 4.07946 4.18138 4.27400 4.34299 4.44883 4.60126 4.82100 4.89921 4.93167 4.97018 5.09710 5.17977 5.22750 5.32306 5.49347 5.53938 5.61930 5.70878 5.86118 6.06335 6.33523 6.41248 6.53736 6.92639 7.50956 9.01273 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032626 B = 0.010144 C = 0.009276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.002816 B = 2759.656567 C = 3017.876424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.171 3.829 3 C -0.030 4.030 4 C -0.228 4.228 5 C -0.212 4.212 6 C -0.066 4.066 7 O -0.197 6.197 8 N -0.640 5.640 9 C 0.041 3.959 10 C -0.097 4.097 11 C 0.047 3.953 12 H 0.000 1.000 13 C -0.524 4.524 14 H 0.080 0.920 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.950 3.050 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.264 1.264 21 H 0.045 0.955 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.166 0.834 25 H 0.178 0.822 26 H 0.229 0.771 27 H 0.341 0.659 28 H 0.033 0.967 29 H 0.097 0.903 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 7.443 -9.361 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.079 3.921 3 C -0.082 4.082 4 C -0.247 4.247 5 C -0.231 4.231 6 C -0.133 4.133 7 O -0.092 6.092 8 N -0.271 5.271 9 C -0.087 4.087 10 C -0.135 4.135 11 C 0.027 3.973 12 H 0.018 0.982 13 C -0.562 4.562 14 H 0.098 0.902 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.776 3.224 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.188 1.188 21 H 0.064 0.936 22 H 0.074 0.926 23 H 0.085 0.915 24 H 0.183 0.817 25 H 0.195 0.805 26 H 0.246 0.754 27 H 0.159 0.841 28 H 0.052 0.948 29 H 0.115 0.885 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.014 6.701 -8.901 11.142 hybrid contribution 0.401 0.360 0.990 1.127 sum 0.387 7.061 -7.912 10.612 Atomic orbital electron populations 1.21554 0.91969 1.01976 0.99863 1.20319 0.95999 0.83184 0.92572 1.23707 1.03536 0.96317 0.84689 1.21779 1.08421 0.95091 0.99442 1.22100 1.06942 0.99456 0.94621 1.24856 1.04043 0.86901 0.97472 1.84145 1.64498 1.24304 1.36295 1.63417 1.28439 1.28984 1.06276 1.23067 0.90712 0.98209 0.96757 1.22326 0.98248 0.99269 0.93698 1.19443 0.94705 0.92359 0.90753 0.98187 1.21900 0.94226 1.35272 1.04849 0.90211 1.25783 0.97619 0.97283 0.98198 1.70135 1.21869 1.44191 1.20370 0.85661 0.80258 0.79092 0.77414 1.20233 1.21574 1.18773 0.93597 0.92595 0.91503 0.81663 0.80471 0.75427 0.84105 0.94841 0.88483 0.94665 0.93429 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.85 7.32 71.98 0.53 -3.32 16 2 C 0.17 7.15 1.10 2.88 0.00 7.16 16 3 C -0.03 -1.19 5.84 24.83 0.15 -1.05 16 4 C -0.23 -7.14 9.92 22.19 0.22 -6.92 16 5 C -0.21 -5.81 10.91 22.19 0.24 -5.57 16 6 C -0.07 -2.00 12.09 66.97 0.81 -1.19 16 7 O -0.20 -8.24 9.74 -2.46 -0.02 -8.26 16 8 N -0.64 -23.17 7.02 -462.32 -3.25 -26.42 16 9 C 0.04 1.55 7.53 86.65 0.65 2.20 16 10 C -0.10 -4.63 6.14 31.80 0.20 -4.43 16 11 C 0.05 2.39 2.36 -10.66 -0.03 2.37 16 12 H 0.00 0.00 7.02 -2.38 -0.02 -0.02 16 13 C -0.52 -28.88 7.46 25.60 0.19 -28.69 16 14 H 0.08 4.21 4.72 -2.91 -0.01 4.20 16 15 C 0.01 0.52 5.31 84.66 0.45 0.97 16 16 N -0.93 -55.42 13.00 21.45 0.28 -55.14 16 17 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 21 H 0.05 1.96 7.26 -2.39 -0.02 1.94 16 22 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.07 2.77 6.96 -2.39 -0.02 2.76 16 24 H 0.17 4.21 7.09 -2.91 -0.02 4.19 16 25 H 0.18 3.43 8.06 -2.91 -0.02 3.41 16 26 H 0.23 4.86 8.06 -2.91 -0.02 4.83 16 27 H 0.34 10.28 6.73 -89.69 -0.60 9.68 16 28 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 30 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 2.38 7.86 -2.39 -0.02 2.36 16 32 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -65.42 261.26 2.97 -62.45 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.52 Total: 19.41 kcal Atomic # 6 Polarization: -41.88 SS G_CDS: 3.41 Total: -38.47 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -2.97 Total: -81.55 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -0.02 Total: -8.26 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -65.42 2.97 -62.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260185071.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.743 kcal (2) G-P(sol) polarization free energy of solvation -65.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds