Wall clock time and date at job start Mon Mar 30 2020 04:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 O 1.42895 * 109.47000 * 240.00527 * 2 1 3 5 5 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 6 6 C 1.38239 * 119.99707 * 84.72939 * 5 2 1 7 7 C 1.38227 * 120.00067 * 179.79007 * 6 5 2 8 8 C 1.38236 * 119.99797 * 0.43878 * 7 6 5 9 9 C 1.50706 * 120.00082 * 179.83576 * 8 7 6 10 10 H 1.08999 * 109.47405 * 159.97575 * 9 8 7 11 11 N 1.46901 * 109.46863 * 39.97811 * 9 8 7 12 12 C 1.50704 * 109.47207 * 279.98153 * 9 8 7 13 13 H 1.07998 * 119.99577 * 359.97438 * 12 9 8 14 14 C 1.37869 * 119.99707 * 180.02562 * 12 9 8 15 15 N 1.31510 * 120.00596 * 359.97438 * 14 12 9 16 16 Si 1.86811 * 119.99728 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.46775 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47066 * 119.99703 * 16 14 12 19 19 H 1.48493 * 109.46916 * 239.99965 * 16 14 12 20 20 C 1.38237 * 120.00258 * 359.81626 * 8 7 6 21 21 C 1.38232 * 119.99702 * 359.97432 * 20 8 7 22 22 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 24 24 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 25 25 H 0.96696 * 114.00485 * 299.99339 * 4 2 1 26 26 H 1.08004 * 120.00227 * 359.97438 * 6 5 2 27 27 H 1.07998 * 120.00241 * 180.27956 * 7 6 5 28 28 H 1.00898 * 111.00528 * 300.00064 * 11 9 8 29 29 H 1.00904 * 111.00150 * 63.95579 * 11 9 8 30 30 H 0.97000 * 120.00619 * 180.02562 * 15 14 12 31 31 H 1.07996 * 119.99913 * 180.02562 * 20 8 7 32 32 H 1.07995 * 120.00328 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0324 -0.7104 1.2304 6 6 2.1591 -2.0870 1.2304 7 6 2.6240 -2.7383 2.3575 8 6 2.9536 -2.0138 3.4878 9 6 3.4569 -2.7242 4.7179 10 1 3.9883 -2.0166 5.3543 11 7 4.3685 -3.8054 4.3204 12 6 2.2905 -3.3038 5.4760 13 1 1.2852 -3.1707 5.1043 14 6 2.5067 -4.0031 6.6444 15 7 3.7307 -4.1647 7.0972 16 14 1.0607 -4.7209 7.5844 17 1 -0.2016 -4.4013 6.8704 18 1 1.2157 -6.1946 7.6811 19 1 1.0185 -4.1370 8.9490 20 6 2.8219 -0.6377 3.4896 21 6 2.3611 0.0139 2.3610 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.7211 -1.5951 -1.2330 26 1 1.8977 -2.6533 0.3488 27 1 2.7273 -3.8133 2.3560 28 1 3.8992 -4.4751 3.7294 29 1 5.1909 -3.4366 3.8668 30 1 3.8829 -4.6570 7.9190 31 1 3.0798 -0.0718 4.3725 32 1 2.2586 1.0890 2.3622 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260319509.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:26 Heat of formation + Delta-G solvation = -55.679259 kcal Electronic energy + Delta-G solvation = -14676.590517 eV Core-core repulsion = 12214.541312 eV Total energy + Delta-G solvation = -2462.049205 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65920 -38.28332 -36.10639 -33.74477 -32.23119 -31.76385 -29.79537 -27.93732 -25.14295 -23.80824 -22.74323 -21.24586 -18.51002 -18.44271 -16.84415 -16.82659 -16.15911 -15.88671 -15.83328 -15.13850 -14.71637 -14.44227 -14.16651 -14.02677 -13.44060 -13.23524 -13.00771 -12.84842 -12.75283 -12.43529 -12.01009 -11.78532 -11.69843 -11.25838 -11.01394 -10.58149 -9.76305 -9.39066 -8.87412 -8.00368 -6.22492 0.52824 0.56618 1.40214 1.42329 1.52943 2.44132 2.92274 3.23210 3.56305 3.74084 3.97840 4.14665 4.28383 4.33270 4.34599 4.43250 4.67292 4.70569 4.87560 5.02897 5.10874 5.16500 5.26487 5.36670 5.59460 5.67140 5.73718 5.94367 6.11718 6.23033 6.63540 6.77359 7.08390 7.23866 7.50239 9.03178 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042608 B = 0.006734 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.994422 B = 4156.962704 C = 4378.425217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.153 3.847 3 H 0.111 0.889 4 O -0.572 6.572 5 C -0.138 4.138 6 C -0.112 4.112 7 C -0.130 4.130 8 C -0.097 4.097 9 C 0.256 3.744 10 H 0.008 0.992 11 N -0.819 5.819 12 C -0.541 4.541 13 H 0.044 0.956 14 C 0.034 3.966 15 N -0.881 5.881 16 Si 0.949 3.051 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.138 4.138 21 C -0.112 4.112 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.385 0.615 26 H 0.143 0.857 27 H 0.114 0.886 28 H 0.323 0.677 29 H 0.310 0.690 30 H 0.256 0.744 31 H 0.112 0.888 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 6.578 -13.295 15.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.094 3.906 3 H 0.129 0.871 4 O -0.380 6.380 5 C -0.139 4.139 6 C -0.130 4.130 7 C -0.148 4.148 8 C -0.100 4.100 9 C 0.146 3.854 10 H 0.026 0.974 11 N -0.346 5.346 12 C -0.580 4.580 13 H 0.062 0.938 14 C -0.169 4.169 15 N -0.517 5.517 16 Si 0.775 3.225 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.157 4.157 21 C -0.130 4.130 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.235 0.765 26 H 0.160 0.840 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.978 6.899 -12.466 15.092 hybrid contribution -0.852 -0.753 0.286 1.173 sum -5.831 6.146 -12.179 14.836 Atomic orbital electron populations 1.22436 0.94366 1.03111 1.03272 1.20756 0.93675 0.95662 0.80493 0.87108 1.86555 1.77825 1.30286 1.43328 1.20697 1.01776 0.94347 0.97063 1.21022 0.99664 0.94240 0.98071 1.20974 1.00773 0.99750 0.93299 1.21448 0.96698 0.94813 0.97001 1.17878 0.90789 0.88595 0.88119 0.97394 1.59011 1.09157 1.17775 1.48689 1.21136 0.91990 1.36844 1.08029 0.93779 1.25697 0.97521 0.95957 0.97771 1.70233 1.20929 1.39712 1.20820 0.85678 0.80117 0.78200 0.78543 1.19550 1.20560 1.20579 1.21173 1.01550 0.94221 0.98732 1.21138 0.98921 1.00503 0.92393 0.92136 0.91382 0.90367 0.76459 0.83978 0.86754 0.86358 0.87879 0.93503 0.86993 0.83999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.52 71.98 0.69 -2.41 16 2 C 0.15 3.25 3.83 29.85 0.11 3.36 16 3 H 0.11 2.17 8.05 -2.39 -0.02 2.15 16 4 O -0.57 -12.38 13.14 -148.98 -1.96 -14.34 16 5 C -0.14 -3.83 5.00 -19.87 -0.10 -3.93 16 6 C -0.11 -3.30 9.33 22.27 0.21 -3.09 16 7 C -0.13 -4.77 9.29 22.27 0.21 -4.57 16 8 C -0.10 -4.12 4.88 -19.86 -0.10 -4.22 16 9 C 0.26 13.03 2.85 43.43 0.12 13.15 16 10 H 0.01 0.46 8.00 -2.39 -0.02 0.45 16 11 N -0.82 -39.26 8.36 -174.94 -1.46 -40.72 16 12 C -0.54 -30.27 8.70 25.60 0.22 -30.04 16 13 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 14 C 0.03 1.92 5.39 84.65 0.46 2.37 16 15 N -0.88 -52.25 12.77 21.44 0.27 -51.97 16 16 Si 0.95 44.16 29.54 68.60 2.03 46.18 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 20 C -0.14 -5.24 9.67 22.27 0.22 -5.03 16 21 C -0.11 -3.38 9.68 22.27 0.22 -3.17 16 22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.39 5.98 7.40 -74.06 -0.55 5.43 16 26 H 0.14 3.13 6.62 -2.91 -0.02 3.11 16 27 H 0.11 4.17 6.66 -2.91 -0.02 4.15 16 28 H 0.32 14.59 7.34 -89.70 -0.66 13.93 16 29 H 0.31 13.40 9.06 -89.69 -0.81 12.58 16 30 H 0.26 14.43 8.31 -92.71 -0.77 13.65 16 31 H 0.11 4.24 8.04 -2.91 -0.02 4.22 16 32 H 0.14 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -65.48 272.98 0.26 -65.22 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.87 Total: 33.18 kcal Atomic # 6 Polarization: -39.81 SS G_CDS: 2.25 Total: -37.56 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -1.19 Total: -92.69 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.96 Total: -14.34 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -65.48 0.26 -65.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319509.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.545 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds