Wall clock time and date at job start Mon Mar 30 2020 04:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47208 * 2 1 4 4 O 1.42895 * 109.47069 * 119.99623 * 2 1 3 5 5 C 1.50697 * 109.46926 * 239.99789 * 2 1 3 6 6 C 1.38238 * 119.99801 * 100.00335 * 5 2 1 7 7 C 1.38235 * 120.00123 * 179.97438 * 6 5 2 8 8 C 1.38243 * 119.99602 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 H 1.08995 * 109.47217 * 19.99867 * 9 8 7 11 11 N 1.46903 * 109.46711 * 139.99802 * 9 8 7 12 12 C 1.50703 * 109.46981 * 259.99508 * 9 8 7 13 13 H 1.07999 * 119.99681 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99656 * 180.02562 * 12 9 8 15 15 N 1.31510 * 120.00072 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 119.99690 * 180.02562 * 14 12 9 17 17 H 1.48507 * 109.47256 * 60.00118 * 16 14 12 18 18 H 1.48506 * 109.47096 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47447 * 300.00223 * 16 14 12 20 20 C 1.38233 * 120.00248 * 0.27275 * 8 7 6 21 21 C 1.38234 * 120.00167 * 279.97351 * 5 2 1 22 22 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46868 * 300.00516 * 1 2 3 24 24 H 1.09003 * 109.46627 * 60.00066 * 1 2 3 25 25 H 0.96703 * 114.00695 * 300.00309 * 4 2 1 26 26 H 1.08000 * 120.00524 * 359.97234 * 6 5 2 27 27 H 1.07999 * 120.00181 * 179.97438 * 7 6 5 28 28 H 1.00903 * 111.00084 * 59.99990 * 11 9 8 29 29 H 1.00900 * 110.99996 * 183.95037 * 11 9 8 30 30 H 0.97005 * 119.99813 * 179.97438 * 15 14 12 31 31 H 1.08004 * 119.99934 * 179.72684 * 20 8 7 32 32 H 1.07999 * 119.99973 * 0.02562 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.0323 -0.7104 -1.2304 6 6 2.4588 0.0194 -2.3242 7 6 2.9200 -0.6322 -3.4528 8 6 2.9553 -2.0138 -3.4872 9 6 3.4576 -2.7242 -4.7177 10 1 4.0624 -2.0388 -5.3115 11 7 4.2747 -3.8776 -4.3179 12 6 2.2854 -3.1989 -5.5373 13 1 1.2776 -3.0051 -5.2010 14 6 2.4998 -3.8806 -6.7165 15 7 3.7271 -4.1169 -7.1257 16 14 1.0469 -4.4683 -7.7328 17 1 0.2216 -3.3019 -8.1376 18 1 1.5418 -5.1685 -8.9453 19 1 0.2220 -5.4013 -6.9239 20 6 2.5241 -2.7437 -2.3953 21 6 2.0672 -2.0919 -1.2651 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.7210 -0.2701 1.9980 26 1 2.4316 1.0987 -2.2972 27 1 3.2528 -0.0620 -4.3075 28 1 3.7362 -4.5283 -3.7658 29 1 4.6763 -4.3331 -5.1237 30 1 3.8778 -4.5968 -7.9551 31 1 2.5476 -3.8231 -2.4240 32 1 1.7341 -2.6621 -0.4105 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260319513.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:31 Heat of formation + Delta-G solvation = -39.899128 kcal Electronic energy + Delta-G solvation = -14649.803258 eV Core-core repulsion = 12188.438331 eV Total energy + Delta-G solvation = -2461.364927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.07384 -36.98292 -34.58508 -32.00318 -30.76462 -30.19770 -28.41402 -25.92883 -23.77071 -22.13871 -21.27386 -19.53896 -17.07817 -16.49414 -16.12105 -15.07180 -14.71558 -14.25641 -14.03219 -13.67564 -13.11652 -12.89537 -12.62061 -12.44222 -12.08983 -11.76060 -11.51790 -11.12773 -10.96105 -10.89185 -10.51946 -10.30691 -10.00530 -9.94769 -9.53118 -8.65893 -8.19135 -7.81180 -7.16708 -6.08596 -4.25963 2.07865 2.14897 3.23587 3.28627 3.31869 4.26629 4.34567 4.58879 4.98200 5.13059 5.18301 5.27385 5.56492 5.67231 5.74749 5.79908 5.98180 6.13694 6.27770 6.34283 6.68367 6.70070 6.76656 7.15183 7.17701 7.28599 7.68476 7.72343 7.74363 7.85592 8.11408 8.67597 8.93922 9.13071 9.45925 10.88420 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.043357 B = 0.006684 C = 0.006346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.644670 B = 4187.907158 C = 4411.081227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.149 3.851 3 H 0.056 0.944 4 O -0.562 6.562 5 C -0.119 4.119 6 C -0.114 4.114 7 C -0.128 4.128 8 C -0.018 4.018 9 C 0.238 3.762 10 H 0.046 0.954 11 N -0.850 5.850 12 C -0.544 4.544 13 H 0.055 0.945 14 C 0.066 3.934 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.113 4.113 21 C -0.096 4.096 22 H 0.064 0.936 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.372 0.628 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.311 0.689 29 H 0.355 0.645 30 H 0.266 0.734 31 H 0.117 0.883 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 6.681 11.229 13.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 H 0.074 0.926 4 O -0.367 6.367 5 C -0.119 4.119 6 C -0.133 4.133 7 C -0.146 4.146 8 C -0.019 4.019 9 C 0.128 3.872 10 H 0.064 0.936 11 N -0.379 5.379 12 C -0.584 4.584 13 H 0.074 0.926 14 C -0.136 4.136 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 C -0.132 4.132 21 C -0.115 4.115 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.218 0.782 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.121 0.879 29 H 0.171 0.829 30 H 0.076 0.924 31 H 0.135 0.865 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.781 6.749 10.985 13.436 hybrid contribution -1.847 -0.487 -0.884 2.105 sum -5.628 6.262 10.101 13.150 Atomic orbital electron populations 1.22491 0.96165 1.03016 1.01984 1.20476 0.92359 0.94043 0.84051 0.92585 1.86615 1.76968 1.57591 1.15551 1.19269 1.04288 0.94114 0.94241 1.20734 1.00238 0.98607 0.93671 1.20963 1.01513 0.94569 0.97569 1.20518 0.92506 0.93133 0.95710 1.18029 0.91643 0.90284 0.87264 0.93567 1.59535 1.37976 1.12960 1.27471 1.21795 0.93527 1.36537 1.06494 0.92634 1.25023 0.95988 0.95610 0.97017 1.69737 1.19308 1.41110 1.23116 0.86566 0.82529 0.78953 0.79433 1.20160 1.21152 1.20215 1.20950 0.99353 0.99931 0.92936 1.20815 0.99467 0.93620 0.97551 0.91655 0.92694 0.91446 0.78209 0.87186 0.86492 0.87906 0.82890 0.92391 0.86468 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.51 37.16 0.35 -1.64 16 2 C 0.15 1.96 3.78 -27.88 -0.11 1.85 16 3 H 0.06 0.65 8.00 -51.93 -0.42 0.24 16 4 O -0.56 -7.26 12.64 -35.23 -0.45 -7.71 16 5 C -0.12 -2.02 4.97 -104.63 -0.52 -2.54 16 6 C -0.11 -1.98 9.67 -39.58 -0.38 -2.36 16 7 C -0.13 -2.57 9.67 -39.58 -0.38 -2.95 16 8 C -0.02 -0.40 4.89 -104.62 -0.51 -0.92 16 9 C 0.24 6.03 2.95 -70.01 -0.21 5.83 16 10 H 0.05 1.28 8.00 -51.93 -0.42 0.86 16 11 N -0.85 -20.73 9.02 -6.65 -0.06 -20.79 16 12 C -0.54 -14.77 8.70 -34.44 -0.30 -15.07 16 13 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 14 C 0.07 1.79 5.38 -17.82 -0.10 1.69 16 15 N -0.89 -24.74 11.54 55.43 0.64 -24.10 16 16 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C -0.11 -2.35 9.29 -39.58 -0.37 -2.71 16 21 C -0.10 -1.78 9.36 -39.58 -0.37 -2.15 16 22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.37 2.86 9.08 45.56 0.41 3.27 16 26 H 0.11 1.57 8.04 -52.49 -0.42 1.14 16 27 H 0.12 2.24 8.04 -52.49 -0.42 1.82 16 28 H 0.31 7.22 7.35 -39.29 -0.29 6.93 16 29 H 0.36 9.19 7.08 -39.29 -0.28 8.91 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.12 2.38 6.68 -52.48 -0.35 2.03 16 32 H 0.11 1.93 7.78 -52.49 -0.41 1.52 16 LS Contribution 272.75 15.07 4.11 4.11 Total: -1.00 -29.40 272.75 -7.06 -36.46 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -3.40 Total: 16.96 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -2.89 Total: -20.97 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.58 Total: -44.89 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.45 Total: -7.71 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.40 -7.06 -36.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260319513.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.438 kcal (2) G-P(sol) polarization free energy of solvation -29.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds