Wall clock time and date at job start Mon Mar 30 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47125 * 2 1 4 4 C 1.38168 * 119.97653 * 90.00248 * 3 2 1 5 5 C 1.38710 * 119.94607 * 180.02562 * 4 3 2 6 6 O 1.35905 * 120.05457 * 179.97438 * 5 4 3 7 7 C 1.38755 * 119.88853 * 359.97438 * 5 4 3 8 8 C 1.38116 * 119.94352 * 0.02562 * 7 5 4 9 9 C 1.50703 * 119.97211 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.47343 * 159.99743 * 9 8 7 11 11 N 1.46905 * 109.47075 * 39.99901 * 9 8 7 12 12 C 1.50697 * 109.47094 * 279.99942 * 9 8 7 13 13 H 1.08003 * 119.99947 * 0.02562 * 12 9 8 14 14 C 1.37881 * 120.00105 * 179.97438 * 12 9 8 15 15 N 1.31513 * 119.99734 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 119.99920 * 180.02562 * 14 12 9 17 17 H 1.48491 * 109.47212 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47100 * 120.00498 * 16 14 12 19 19 H 1.48497 * 109.46797 * 239.99920 * 16 14 12 20 20 C 1.38247 * 119.97185 * 270.29402 * 3 2 1 21 21 H 1.08996 * 109.47593 * 59.99903 * 1 2 3 22 22 H 1.09000 * 109.46952 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46940 * 300.00094 * 1 2 3 24 24 H 1.09001 * 109.46940 * 239.99906 * 2 1 3 25 25 H 1.09004 * 109.47311 * 120.00052 * 2 1 3 26 26 H 1.08001 * 120.02253 * 0.03960 * 4 3 2 27 27 H 0.96698 * 113.99882 * 270.02280 * 6 5 4 28 28 H 1.08000 * 120.02484 * 179.97438 * 7 5 4 29 29 H 1.00901 * 110.99869 * 176.04968 * 11 9 8 30 30 H 1.00896 * 110.99543 * 300.00090 * 11 9 8 31 31 H 0.97005 * 119.99709 * 179.97438 * 15 14 12 32 32 H 1.08003 * 119.94725 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0716 1.1969 5 6 2.7243 3.3796 1.1961 6 8 2.9510 4.0220 2.3721 7 6 2.9545 4.0309 -0.0072 8 6 2.7229 3.3759 -1.2010 9 6 2.9733 4.0825 -2.5083 10 1 3.0856 3.3458 -3.3038 11 7 4.2009 4.8827 -2.4052 12 6 1.8091 4.9867 -2.8216 13 1 0.9719 5.0442 -2.1418 14 6 1.8133 5.7412 -3.9756 15 7 2.8331 5.6714 -4.8032 16 14 0.3705 6.8626 -4.3636 17 1 -0.6412 6.7597 -3.2816 18 1 0.8471 8.2654 -4.4648 19 1 -0.2414 6.4535 -5.6533 20 6 2.2567 2.0739 -1.1976 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 2.0831 1.5622 2.1322 27 1 2.1835 4.5018 2.7124 28 1 3.3137 5.0494 -0.0104 29 1 4.4258 5.3153 -3.2886 30 1 4.1218 5.5735 -1.6740 31 1 2.8359 6.2020 -5.6152 32 1 2.0713 1.5653 -2.1321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260329336.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:01 Heat of formation + Delta-G solvation = -60.195754 kcal Electronic energy + Delta-G solvation = -14767.948756 eV Core-core repulsion = 12305.703702 eV Total energy + Delta-G solvation = -2462.245055 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77697 -38.08351 -36.81123 -34.48707 -32.95883 -30.65446 -29.83408 -27.96230 -25.10674 -24.33457 -22.71001 -20.80164 -18.74673 -18.58554 -17.34989 -16.94123 -16.65842 -16.00857 -15.54377 -14.88886 -14.82544 -14.57565 -14.06555 -13.81919 -13.45080 -13.12725 -12.92429 -12.70650 -12.67025 -12.34918 -12.22500 -11.92779 -11.88294 -11.66067 -11.07836 -10.75152 -9.50699 -9.39111 -9.17475 -8.15042 -6.41465 0.44741 0.57500 1.34226 1.37272 1.48400 2.33637 2.83595 3.02527 3.38145 3.91077 4.04388 4.27820 4.37432 4.43755 4.57190 4.65115 4.73919 4.78781 5.02469 5.06186 5.12736 5.23443 5.37530 5.44255 5.55287 5.62064 5.71021 5.90537 6.05289 6.13195 6.59962 6.87910 6.92751 7.06670 7.34633 8.79716 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026755 B = 0.008324 C = 0.007502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.288410 B = 3362.943274 C = 3731.259084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.064 4.064 4 C -0.163 4.163 5 C 0.103 3.897 6 O -0.507 6.507 7 C -0.156 4.156 8 C -0.032 4.032 9 C 0.241 3.759 10 H 0.013 0.987 11 N -0.843 5.843 12 C -0.556 4.556 13 H 0.047 0.953 14 C 0.021 3.979 15 N -0.916 5.916 16 Si 0.961 3.039 17 H -0.272 1.272 18 H -0.277 1.277 19 H -0.278 1.278 20 C -0.147 4.147 21 H 0.041 0.959 22 H 0.078 0.922 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.147 0.853 27 H 0.406 0.594 28 H 0.112 0.888 29 H 0.346 0.654 30 H 0.317 0.683 31 H 0.268 0.732 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 -6.963 10.450 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.064 4.064 4 C -0.181 4.181 5 C 0.058 3.942 6 O -0.319 6.319 7 C -0.175 4.175 8 C -0.033 4.033 9 C 0.131 3.869 10 H 0.031 0.969 11 N -0.372 5.372 12 C -0.596 4.596 13 H 0.065 0.935 14 C -0.179 4.179 15 N -0.555 5.555 16 Si 0.786 3.214 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.204 1.204 20 C -0.166 4.166 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.109 0.891 26 H 0.165 0.835 27 H 0.264 0.736 28 H 0.130 0.870 29 H 0.160 0.840 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.464 -7.829 10.392 13.465 hybrid contribution -1.555 1.985 -0.948 2.694 sum -5.019 -5.844 9.444 12.188 Atomic orbital electron populations 1.21726 0.94006 1.02597 1.01709 1.20579 0.96719 0.90599 1.03762 1.19979 0.97459 0.97340 0.91636 1.21300 1.03415 0.94645 0.98787 1.18469 0.98912 0.92056 0.84714 1.84731 1.41989 1.69611 1.35587 1.21138 1.03987 1.00540 0.91843 1.20154 0.93985 0.93808 0.95372 1.17850 0.87944 0.92026 0.89068 0.96854 1.59500 1.36356 1.29966 1.11395 1.22007 1.05494 1.25447 1.06648 0.93509 1.25774 0.98688 0.98077 0.95385 1.69854 1.31544 1.41627 1.12525 0.85463 0.79379 0.78506 0.78007 1.19610 1.20247 1.20396 1.21009 1.02768 0.94497 0.98323 0.93975 0.90353 0.92441 0.90736 0.89146 0.83481 0.73621 0.86994 0.83983 0.87268 0.92229 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.89 71.98 0.71 -2.31 16 2 C -0.08 -1.86 6.06 29.85 0.18 -1.68 16 3 C -0.06 -2.04 5.13 -19.88 -0.10 -2.14 16 4 C -0.16 -5.00 9.64 22.37 0.22 -4.79 16 5 C 0.10 3.55 6.71 22.51 0.15 3.70 16 6 O -0.51 -14.73 13.50 -92.48 -1.25 -15.98 16 7 C -0.16 -6.43 9.23 22.36 0.21 -6.23 16 8 C -0.03 -1.46 4.89 -19.88 -0.10 -1.56 16 9 C 0.24 12.56 2.95 43.42 0.13 12.69 16 10 H 0.01 0.78 8.00 -2.39 -0.02 0.76 16 11 N -0.84 -42.32 9.02 -174.95 -1.58 -43.90 16 12 C -0.56 -30.53 8.70 25.60 0.22 -30.31 16 13 H 0.05 2.60 7.74 -2.91 -0.02 2.57 16 14 C 0.02 1.14 5.38 84.66 0.46 1.59 16 15 N -0.92 -51.17 11.54 21.45 0.25 -50.92 16 16 Si 0.96 42.96 29.54 68.60 2.03 44.98 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 20 C -0.15 -5.84 9.32 22.28 0.21 -5.63 16 21 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 22 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 24 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 25 H 0.09 1.72 8.09 -2.38 -0.02 1.70 16 26 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 27 H 0.41 7.62 9.06 -74.06 -0.67 6.95 16 28 H 0.11 4.71 6.66 -2.91 -0.02 4.69 16 29 H 0.35 18.41 7.08 -89.69 -0.63 17.77 16 30 H 0.32 15.15 7.34 -89.70 -0.66 14.49 16 31 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 32 H 0.11 4.44 8.04 -2.91 -0.02 4.41 16 Total: -1.00 -62.13 273.70 0.91 -61.22 By element: Atomic # 1 Polarization: 42.08 SS G_CDS: -0.82 Total: 41.26 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 2.28 Total: -36.66 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -1.33 Total: -94.82 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -1.25 Total: -15.98 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -62.13 0.91 -61.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260329336.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.021 kcal (2) G-P(sol) polarization free energy of solvation -62.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds