Wall clock time and date at job start Mon Mar 30 2020 04:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47643 * 2 1 4 4 O 1.42907 * 109.46841 * 239.99921 * 2 1 3 5 5 C 1.50702 * 109.47157 * 120.00757 * 2 1 3 6 6 C 1.38254 * 120.00299 * 95.01328 * 5 2 1 7 7 C 1.38217 * 119.99680 * 179.97438 * 6 5 2 8 8 C 1.38246 * 120.00325 * 0.02562 * 7 6 5 9 9 C 1.38217 * 119.99979 * 359.74610 * 8 7 6 10 10 C 1.38213 * 119.99605 * 274.99637 * 5 2 1 11 11 C 1.50698 * 119.99911 * 0.02562 * 10 5 2 12 12 H 1.08998 * 109.47607 * 40.00637 * 11 10 5 13 13 N 1.46901 * 109.47110 * 160.00218 * 11 10 5 14 14 C 1.50702 * 109.47465 * 279.99841 * 11 10 5 15 15 H 1.08002 * 119.99441 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00075 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00481 * 359.97438 * 16 14 11 18 18 Si 1.86803 * 119.99886 * 179.73007 * 16 14 11 19 19 H 1.48494 * 109.47225 * 180.27306 * 18 16 14 20 20 H 1.48506 * 109.46866 * 300.27330 * 18 16 14 21 21 H 1.48498 * 109.47306 * 60.26614 * 18 16 14 22 22 H 1.09000 * 109.46351 * 299.99950 * 1 2 3 23 23 H 1.09002 * 109.46941 * 59.99401 * 1 2 3 24 24 H 1.08993 * 109.47154 * 179.97438 * 1 2 3 25 25 H 0.96701 * 113.99661 * 60.00312 * 4 2 1 26 26 H 1.07995 * 120.00060 * 0.02562 * 6 5 2 27 27 H 1.08001 * 119.99605 * 180.02562 * 7 6 5 28 28 H 1.08007 * 120.00253 * 180.02562 * 8 7 6 29 29 H 1.08003 * 119.99954 * 180.26955 * 9 8 7 30 30 H 1.00908 * 111.00077 * 296.04383 * 13 11 10 31 31 H 1.00905 * 111.00224 * 59.99512 * 13 11 10 32 32 H 0.97005 * 119.99656 * 359.72741 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0324 -0.7106 1.2304 6 6 2.3615 -2.0519 1.1681 7 6 2.8227 -2.7034 2.2965 8 6 2.9544 -2.0139 3.4875 9 6 2.6299 -0.6717 3.5486 10 6 2.1644 -0.0211 2.4210 11 6 1.8055 1.4409 2.4888 12 1 0.9035 1.6212 1.9041 13 7 1.5666 1.8221 3.8873 14 6 2.9387 2.2629 1.9308 15 1 3.8295 1.7752 1.5634 16 6 2.8382 3.6373 1.8894 17 7 1.7532 4.2311 2.3364 18 14 4.2459 4.6565 1.2047 19 1 3.8947 6.0975 1.2770 20 1 5.4728 4.4053 2.0028 21 1 4.4896 4.2768 -0.2101 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.7210 -0.2701 -1.9980 26 1 2.2589 -2.5905 0.2377 27 1 3.0802 -3.7511 2.2478 28 1 3.3152 -2.5229 4.3691 29 1 2.7370 -0.1320 4.4779 30 1 0.7699 1.3313 4.2649 31 1 2.3887 1.6642 4.4507 32 1 1.0220 3.7018 2.6916 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260459280.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:49 Heat of formation + Delta-G solvation = -56.528090 kcal Electronic energy + Delta-G solvation = -15338.295418 eV Core-core repulsion = 12876.209405 eV Total energy + Delta-G solvation = -2462.086013 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81275 -37.91698 -36.71512 -33.57299 -33.09954 -30.79588 -30.02918 -27.64816 -24.89924 -24.48671 -22.07999 -21.36898 -18.91197 -18.15169 -17.63132 -16.60637 -16.20655 -15.85449 -15.55421 -15.16836 -14.91763 -14.79829 -14.16291 -13.87154 -13.49352 -13.26943 -13.13484 -12.85718 -12.62613 -12.23185 -11.96580 -11.84378 -11.47399 -11.04308 -10.86373 -10.47767 -9.67190 -9.42911 -9.27067 -8.36620 -6.22700 0.48190 0.56108 1.54808 1.60885 1.80559 2.61057 2.89370 3.30919 3.33981 3.89791 4.10203 4.11169 4.21610 4.23969 4.25546 4.41243 4.60451 4.68758 4.84469 4.90320 5.03091 5.16391 5.20125 5.30054 5.60109 5.64609 5.78930 5.96019 6.17228 6.25273 6.69007 6.77983 6.87504 7.04225 7.65982 8.98880 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025314 B = 0.010990 C = 0.009450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.835866 B = 2547.150947 C = 2962.274186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 H 0.056 0.944 4 O -0.574 6.574 5 C -0.099 4.099 6 C -0.108 4.108 7 C -0.141 4.141 8 C -0.118 4.118 9 C -0.147 4.147 10 C -0.090 4.090 11 C 0.242 3.758 12 H 0.022 0.978 13 N -0.838 5.838 14 C -0.606 4.606 15 H 0.027 0.973 16 C -0.006 4.006 17 N -0.916 5.916 18 Si 1.103 2.897 19 H -0.284 1.284 20 H -0.280 1.280 21 H -0.276 1.276 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.393 0.607 26 H 0.130 0.870 27 H 0.149 0.851 28 H 0.147 0.853 29 H 0.120 0.880 30 H 0.318 0.682 31 H 0.330 0.670 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -11.283 -2.315 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.081 3.919 3 H 0.074 0.926 4 O -0.382 6.382 5 C -0.099 4.099 6 C -0.126 4.126 7 C -0.159 4.159 8 C -0.136 4.136 9 C -0.165 4.165 10 C -0.093 4.093 11 C 0.132 3.868 12 H 0.040 0.960 13 N -0.367 5.367 14 C -0.645 4.645 15 H 0.045 0.955 16 C -0.210 4.210 17 N -0.551 5.551 18 Si 0.927 3.073 19 H -0.210 1.210 20 H -0.206 1.206 21 H -0.202 1.202 22 H 0.068 0.932 23 H 0.096 0.904 24 H 0.087 0.913 25 H 0.242 0.758 26 H 0.148 0.852 27 H 0.167 0.833 28 H 0.164 0.836 29 H 0.138 0.862 30 H 0.129 0.871 31 H 0.144 0.856 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.065 -9.366 -2.446 9.680 hybrid contribution -0.613 -1.933 0.254 2.043 sum -0.548 -11.299 -2.192 11.522 Atomic orbital electron populations 1.22330 0.94711 1.02585 1.02633 1.20466 0.93382 0.94568 0.83488 0.92589 1.86387 1.77647 1.57757 1.16419 1.19632 1.01751 0.94655 0.93887 1.21131 0.98612 0.93686 0.99128 1.21380 1.01056 1.01009 0.92451 1.21385 0.99535 0.93700 0.98998 1.21097 1.01649 0.95680 0.98112 1.21087 0.96841 0.97840 0.93490 1.18086 0.95437 0.86044 0.87210 0.96023 1.59217 1.08333 1.64926 1.04239 1.21811 1.03115 0.93652 1.45924 0.95481 1.26796 1.02373 0.96962 0.94853 1.70673 1.06823 1.40368 1.37228 0.83120 0.72983 0.74843 0.76380 1.20967 1.20555 1.20161 0.93205 0.90406 0.91311 0.75771 0.85177 0.83342 0.83572 0.86249 0.87066 0.85638 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.35 9.37 71.98 0.67 -4.67 16 2 C 0.14 5.31 3.13 29.85 0.09 5.40 16 3 H 0.06 2.56 6.16 -2.39 -0.01 2.55 16 4 O -0.57 -18.81 12.16 -148.98 -1.81 -20.62 16 5 C -0.10 -3.97 5.06 -19.87 -0.10 -4.07 16 6 C -0.11 -3.74 9.35 22.27 0.21 -3.53 16 7 C -0.14 -4.24 10.05 22.27 0.22 -4.02 16 8 C -0.12 -3.66 10.05 22.27 0.22 -3.44 16 9 C -0.15 -5.51 9.25 22.27 0.21 -5.30 16 10 C -0.09 -3.88 5.01 -19.87 -0.10 -3.98 16 11 C 0.24 11.83 1.81 43.42 0.08 11.90 16 12 H 0.02 1.16 5.71 -2.39 -0.01 1.15 16 13 N -0.84 -38.29 7.28 -174.95 -1.27 -39.56 16 14 C -0.61 -33.66 7.49 25.60 0.19 -33.47 16 15 H 0.03 1.57 7.74 -2.91 -0.02 1.54 16 16 C -0.01 -0.31 5.39 84.65 0.46 0.14 16 17 N -0.92 -54.89 13.50 21.45 0.29 -54.60 16 18 Si 1.10 50.79 29.90 68.60 2.05 52.84 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 H 0.05 1.79 6.72 -2.39 -0.02 1.78 16 23 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.39 9.07 9.08 -74.06 -0.67 8.40 16 26 H 0.13 4.17 7.35 -2.91 -0.02 4.14 16 27 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 28 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 29 H 0.12 4.24 6.25 -2.91 -0.02 4.22 16 30 H 0.32 12.75 9.06 -89.69 -0.81 11.94 16 31 H 0.33 14.58 7.28 -89.69 -0.65 13.93 16 32 H 0.28 16.85 6.40 -92.70 -0.59 16.25 16 Total: -1.00 -66.07 264.25 0.61 -65.46 By element: Atomic # 1 Polarization: 42.32 SS G_CDS: -0.80 Total: 41.52 kcal Atomic # 6 Polarization: -47.19 SS G_CDS: 2.16 Total: -45.03 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -0.98 Total: -94.16 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -1.81 Total: -20.62 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.84 kcal Total: -66.07 0.61 -65.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459280.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.931 kcal (2) G-P(sol) polarization free energy of solvation -66.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds