Wall clock time and date at job start Mon Mar 30 2020 03:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47410 * 2 1 4 4 H 1.08010 * 119.99993 * 4.79898 * 3 2 1 5 5 C 1.37871 * 120.00157 * 184.79761 * 3 2 1 6 6 N 1.31514 * 120.00202 * 6.24556 * 5 3 2 7 7 Si 1.86808 * 120.00163 * 186.24386 * 5 3 2 8 8 H 1.48497 * 109.46835 * 0.02562 * 7 5 3 9 9 H 1.48493 * 109.46854 * 120.00113 * 7 5 3 10 10 H 1.48494 * 109.47010 * 240.00192 * 7 5 3 11 11 N 1.46894 * 109.46917 * 239.99647 * 2 1 3 12 12 C 1.46896 * 111.00426 * 300.00414 * 11 2 1 13 13 C 1.53005 * 117.49880 * 223.74653 * 12 11 2 14 14 C 1.53001 * 117.50232 * 155.08332 * 12 11 2 15 15 C 1.50701 * 109.46864 * 120.00144 * 2 1 3 16 16 C 1.34518 * 125.79194 * 314.11505 * 15 2 1 17 17 C 1.41379 * 106.84368 * 180.02562 * 16 15 2 18 18 C 1.34520 * 106.83771 * 359.97438 * 17 16 15 19 19 O 1.34299 * 108.42245 * 359.73997 * 18 17 16 20 20 H 1.09000 * 109.47029 * 59.99589 * 1 2 3 21 21 H 1.08991 * 109.47253 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46955 * 300.00215 * 1 2 3 23 23 H 0.96999 * 120.00601 * 180.02562 * 6 5 3 24 24 H 1.00902 * 110.99954 * 63.95868 * 11 2 1 25 25 H 1.09002 * 115.55082 * 9.41257 * 12 11 2 26 26 H 1.08993 * 117.50017 * 359.97438 * 13 12 11 27 27 H 1.08999 * 117.49724 * 145.01559 * 13 12 11 28 28 H 1.08997 * 117.50382 * 214.97531 * 14 12 11 29 29 H 1.08997 * 117.49745 * 359.97438 * 14 12 11 30 30 H 1.08003 * 126.57760 * 359.96907 * 16 15 2 31 31 H 1.07993 * 126.58149 * 179.97438 * 17 16 15 32 32 H 1.07994 * 125.78605 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 1.3337 2.2407 0.0783 5 6 3.3840 1.6740 -0.0999 6 7 4.2239 0.6859 -0.3183 7 14 4.0224 3.4209 0.0751 8 1 2.8830 4.3426 0.3148 9 1 4.9647 3.4911 1.2205 10 1 4.7268 3.8175 -1.1705 11 7 2.0196 -0.6925 -1.1994 12 6 1.5486 -2.0835 -1.2333 13 6 2.5590 -3.1621 -1.6292 14 6 1.4461 -2.7616 -2.6011 15 6 2.0323 -0.7105 1.2305 16 6 1.5784 -0.5295 2.4838 17 6 2.3258 -1.3916 3.3186 18 6 3.1913 -2.0483 2.5254 19 8 3.0049 -1.6361 1.2609 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 5.1748 0.8640 -0.3882 24 1 1.7502 -0.1990 -2.0372 25 1 0.8007 -2.3450 -0.4847 26 1 3.5731 -2.8395 -1.8648 27 1 2.4756 -4.1332 -1.1413 28 1 0.6312 -3.4694 -2.7522 29 1 1.7279 -2.1754 -3.4757 30 1 0.7942 0.1456 2.7930 31 1 2.2217 -1.5018 4.3879 32 1 3.9107 -2.7856 2.8499 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260492919.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:45 Heat of formation + Delta-G solvation = 35.373917 kcal Electronic energy + Delta-G solvation = -15744.522038 eV Core-core repulsion = 13286.421195 eV Total energy + Delta-G solvation = -2458.100843 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.93975 -38.85080 -36.28629 -33.68657 -33.25181 -30.09605 -28.68751 -27.20635 -23.42270 -22.97421 -22.07408 -21.90702 -20.31564 -18.73102 -17.72012 -16.66567 -16.46079 -16.14343 -15.72620 -14.99542 -14.36235 -14.25859 -13.86282 -13.51657 -13.26432 -12.90687 -12.89787 -12.82587 -12.38612 -12.35467 -12.20906 -11.88871 -11.37255 -11.12847 -10.96266 -10.50681 -10.38757 -8.85474 -8.50216 -7.87945 -6.18531 1.36370 1.44866 1.46622 1.54053 2.11672 2.47310 2.70187 3.19633 3.28932 3.68573 4.18838 4.26654 4.37145 4.48085 4.52851 4.63975 4.71951 4.77596 4.87315 4.90155 5.08195 5.18422 5.24414 5.40667 5.43715 5.48570 5.68725 5.78344 6.04035 6.14715 6.57487 6.83931 7.11105 7.17616 7.53326 9.03122 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022205 B = 0.013985 C = 0.011128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.667871 B = 2001.596877 C = 2515.473122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.300 3.700 3 C -0.550 4.550 4 H 0.059 0.941 5 C 0.047 3.953 6 N -0.838 5.838 7 Si 0.935 3.065 8 H -0.268 1.268 9 H -0.291 1.291 10 H -0.281 1.281 11 N -0.622 5.622 12 C 0.016 3.984 13 C -0.172 4.172 14 C -0.180 4.180 15 C 0.078 3.922 16 C -0.286 4.286 17 C -0.221 4.221 18 C -0.101 4.101 19 O -0.159 6.159 20 H 0.061 0.939 21 H 0.047 0.953 22 H 0.053 0.947 23 H 0.251 0.749 24 H 0.329 0.671 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.134 0.866 31 H 0.159 0.841 32 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.520 -5.334 0.640 7.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.210 3.790 3 C -0.588 4.588 4 H 0.077 0.923 5 C -0.161 4.161 6 N -0.470 5.470 7 Si 0.762 3.238 8 H -0.192 1.192 9 H -0.218 1.218 10 H -0.207 1.207 11 N -0.251 5.251 12 C -0.095 4.095 13 C -0.211 4.211 14 C -0.218 4.218 15 C 0.025 3.975 16 C -0.306 4.306 17 C -0.240 4.240 18 C -0.168 4.168 19 O -0.053 6.053 20 H 0.080 0.920 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.148 0.852 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.152 0.848 31 H 0.176 0.824 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -3.546 -5.644 0.626 6.695 hybrid contribution -0.199 1.217 0.329 1.276 sum -3.745 -4.427 0.955 5.876 Atomic orbital electron populations 1.22384 0.96689 1.00336 1.01846 1.17198 0.88613 0.90454 0.82726 1.21093 0.92374 0.90495 1.54815 0.92293 1.25599 0.97533 0.99131 0.93805 1.70366 1.01885 1.31390 1.43393 0.85878 0.78367 0.82343 0.77194 1.19208 1.21772 1.20736 1.60334 1.61964 0.98842 1.04002 1.22355 0.99197 0.90618 0.97340 1.22899 0.95274 0.98930 1.03986 1.23236 1.01381 1.03949 0.93230 1.23475 0.87342 0.88571 0.98109 1.21472 1.08136 1.07792 0.93192 1.21876 1.00113 1.01130 1.00897 1.24461 1.04704 1.05221 0.82423 1.84232 1.46267 1.45557 1.29234 0.92035 0.93369 0.92838 0.94011 0.85170 0.90523 0.90989 0.88979 0.87374 0.89066 0.84782 0.82382 0.76822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.09 8.01 71.98 0.58 -5.52 16 2 C 0.30 14.13 0.49 2.04 0.00 14.13 16 3 C -0.55 -28.75 8.10 25.60 0.21 -28.55 16 4 H 0.06 3.06 7.76 -2.91 -0.02 3.03 16 5 C 0.05 2.52 5.22 84.65 0.44 2.96 16 6 N -0.84 -47.06 11.88 21.45 0.25 -46.80 16 7 Si 0.94 42.95 29.54 68.60 2.03 44.97 16 8 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 9 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 N -0.62 -28.35 5.07 -455.69 -2.31 -30.66 16 12 C 0.02 0.62 4.36 44.92 0.20 0.82 16 13 C -0.17 -6.25 10.46 30.62 0.32 -5.93 16 14 C -0.18 -5.64 10.34 30.62 0.32 -5.33 16 15 C 0.08 3.77 4.24 24.83 0.11 3.88 16 16 C -0.29 -12.78 10.16 22.19 0.23 -12.56 16 17 C -0.22 -8.68 10.91 22.19 0.24 -8.44 16 18 C -0.10 -4.04 12.09 66.97 0.81 -3.23 16 19 O -0.16 -7.69 9.66 -2.48 -0.02 -7.72 16 20 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 21 H 0.05 1.76 6.31 -2.39 -0.02 1.75 16 22 H 0.05 2.07 7.51 -2.39 -0.02 2.05 16 23 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 24 H 0.33 14.77 8.67 -89.69 -0.78 13.99 16 25 H 0.08 3.04 6.03 -2.39 -0.01 3.03 16 26 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.13 5.64 7.67 -2.91 -0.02 5.62 16 31 H 0.16 5.01 8.06 -2.91 -0.02 4.99 16 32 H 0.22 6.59 8.06 -2.91 -0.02 6.57 16 Total: -1.00 -60.04 270.93 3.73 -56.31 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.34 Total: 31.66 kcal Atomic # 6 Polarization: -51.21 SS G_CDS: 3.44 Total: -47.77 kcal Atomic # 7 Polarization: -75.41 SS G_CDS: -2.05 Total: -77.46 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.02 Total: -7.72 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -60.04 3.73 -56.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260492919.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.689 kcal (2) G-P(sol) polarization free energy of solvation -60.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds