Wall clock time and date at job start Mon Mar 30 2020 02:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34471 * 126.16753 * 2 1 4 4 C 1.30253 * 108.70602 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.62276 * 180.26292 * 4 3 2 6 6 C 1.50702 * 109.47075 * 89.69163 * 5 4 3 7 7 H 1.08000 * 120.00121 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99849 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99793 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 119.99948 * 359.97438 * 8 6 5 11 11 H 1.48498 * 109.47074 * 90.00279 * 10 8 6 12 12 H 1.48506 * 109.47147 * 209.99880 * 10 8 6 13 13 H 1.48501 * 109.47335 * 330.00107 * 10 8 6 14 14 O 1.33974 * 108.75653 * 359.97438 * 4 3 2 15 15 C 1.34332 * 126.16391 * 180.02562 * 2 1 3 16 16 C 1.50699 * 126.44280 * 0.02562 * 15 2 1 17 17 C 1.53779 * 113.61196 * 219.13336 * 16 15 2 18 18 C 1.53955 * 87.02120 * 220.05233 * 17 16 15 19 19 C 1.53773 * 87.11037 * 25.36454 * 18 17 16 20 20 H 1.08989 * 109.47114 * 269.97967 * 1 2 3 21 21 H 1.08999 * 109.46858 * 29.97812 * 1 2 3 22 22 H 1.09004 * 109.46750 * 149.97405 * 1 2 3 23 23 H 1.09003 * 109.46949 * 209.69285 * 5 4 3 24 24 H 1.09000 * 109.47067 * 329.69047 * 5 4 3 25 25 H 0.96998 * 119.99873 * 179.97438 * 9 8 6 26 26 H 1.08995 * 112.85282 * 350.33542 * 16 15 2 27 27 H 1.09002 * 113.62148 * 334.56919 * 17 16 15 28 28 H 1.08999 * 113.61513 * 105.47224 * 17 16 15 29 29 H 1.09002 * 113.53336 * 270.81192 * 18 17 16 30 30 H 1.08997 * 113.74895 * 139.94872 * 18 17 16 31 31 H 1.09005 * 113.61656 * 220.09162 * 19 18 17 32 32 H 1.08996 * 113.69174 * 89.20122 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6947 -0.0006 5 6 4.7480 1.5999 0.0049 6 6 5.1436 1.9011 1.4275 7 1 4.5792 1.4790 2.2459 8 6 6.2260 2.7156 1.6843 9 7 6.5709 2.9789 2.9258 10 14 7.2025 3.4452 0.2688 11 1 6.6200 4.7576 -0.1098 12 1 8.6151 3.6327 0.6868 13 1 7.1488 2.5253 -0.8957 14 8 3.5734 -0.6447 -0.0003 15 6 2.2997 -1.0845 -0.0005 16 6 1.8493 -2.5226 -0.0017 17 6 2.7078 -3.4377 0.8873 18 6 2.5881 -4.4957 -0.2247 19 6 2.3688 -3.3299 -1.2031 20 1 -0.3633 -0.0004 1.0276 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5143 23 1 5.5752 1.1067 -0.5057 24 1 4.5061 2.5298 -0.5097 25 1 7.3326 3.5517 3.1065 26 1 0.7778 -2.6307 0.1665 27 1 3.7244 -3.0736 1.0358 28 1 2.2197 -3.7247 1.8187 29 1 1.7188 -5.1444 -0.1165 30 1 3.5095 -5.0495 -0.4048 31 1 1.6073 -3.5298 -1.9569 32 1 3.2917 -2.9353 -1.6281 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260656979.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:29 Heat of formation + Delta-G solvation = 24.719800 kcal Electronic energy + Delta-G solvation = -14741.210964 eV Core-core repulsion = 12282.648124 eV Total energy + Delta-G solvation = -2458.562840 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.63174 -38.50877 -34.46265 -33.50988 -31.63497 -29.35874 -27.59386 -25.62661 -24.64928 -22.72541 -20.86056 -20.09059 -19.09485 -17.06284 -16.39427 -15.76199 -15.53928 -14.76024 -14.24258 -13.57807 -12.99226 -12.83308 -12.69221 -12.44289 -12.35356 -12.18214 -12.09683 -11.77536 -10.94166 -10.87138 -10.65313 -10.50292 -10.45613 -10.31632 -9.98245 -9.60663 -9.52324 -8.67931 -7.76335 -6.16358 -4.18383 2.12019 3.24206 3.31109 3.32804 3.38623 3.43661 4.32819 4.58121 4.64961 4.70797 4.83234 4.90550 5.15405 5.31767 5.39179 5.50169 5.65193 5.78778 5.82474 5.84478 5.92523 5.95546 6.00840 6.10861 6.39007 6.57214 6.67018 6.73480 6.91583 7.09516 7.46332 8.34595 8.60054 8.85064 9.39205 10.96252 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034985 B = 0.007164 C = 0.006614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.150839 B = 3907.376329 C = 4232.446061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.015 4.015 3 N -0.502 5.502 4 C 0.255 3.745 5 C 0.073 3.927 6 C -0.522 4.522 7 H 0.076 0.924 8 C 0.076 3.924 9 N -0.892 5.892 10 Si 0.878 3.122 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.263 1.263 14 O -0.199 6.199 15 C -0.073 4.073 16 C -0.021 4.021 17 C -0.135 4.135 18 C -0.141 4.141 19 C -0.133 4.133 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.047 0.953 24 H 0.059 0.941 25 H 0.268 0.732 26 H 0.114 0.886 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 -11.996 -7.678 16.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.134 4.134 3 N -0.231 5.231 4 C 0.048 3.952 5 C 0.035 3.965 6 C -0.560 4.560 7 H 0.094 0.906 8 C -0.127 4.127 9 N -0.529 5.529 10 Si 0.704 3.296 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.188 1.188 14 O -0.087 6.087 15 C -0.126 4.126 16 C -0.039 4.039 17 C -0.172 4.172 18 C -0.179 4.179 19 C -0.170 4.170 20 H 0.087 0.913 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.132 0.868 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.895 -11.287 -7.562 16.239 hybrid contribution 0.758 -0.133 -0.457 0.895 sum -8.137 -11.420 -8.019 16.153 Atomic orbital electron populations 1.20017 0.87556 1.02421 1.02243 1.21463 0.97459 0.88401 1.06125 1.70400 1.00840 1.30557 1.21311 1.26964 0.95793 0.78153 0.94258 1.18408 0.86170 0.91429 1.00455 1.20715 1.14424 1.31380 0.89500 0.90616 1.24886 0.96568 0.95436 0.95824 1.69878 1.27498 1.36976 1.18593 0.86807 0.79679 0.80303 0.82819 1.19688 1.20828 1.18766 1.84361 1.29264 1.24925 1.70147 1.22554 0.81702 0.96700 1.11652 1.20983 0.99737 0.84811 0.98374 1.23015 1.01175 0.95757 0.97249 1.22856 1.02057 0.96330 0.96633 1.22984 1.01828 0.96076 0.96123 0.91265 0.91016 0.91509 0.93497 0.92352 0.92250 0.86769 0.89251 0.91054 0.90100 0.91165 0.91168 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 10.08 36.01 0.36 -0.55 16 2 C -0.01 -0.29 7.11 -82.81 -0.59 -0.87 16 3 N -0.50 -11.70 11.29 -7.36 -0.08 -11.78 16 4 C 0.25 6.08 7.53 -12.95 -0.10 5.98 16 5 C 0.07 1.82 4.67 -29.04 -0.14 1.69 16 6 C -0.52 -15.14 9.65 -34.44 -0.33 -15.47 16 7 H 0.08 2.44 7.98 -52.49 -0.42 2.02 16 8 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 9 N -0.89 -27.19 13.96 55.43 0.77 -26.42 16 10 Si 0.88 20.90 27.47 -169.99 -4.67 16.23 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 14 O -0.20 -4.36 10.56 5.35 0.06 -4.31 16 15 C -0.07 -1.34 6.38 -35.69 -0.23 -1.57 16 16 C -0.02 -0.27 3.99 -90.96 -0.36 -0.64 16 17 C -0.13 -1.70 7.64 -25.83 -0.20 -1.90 16 18 C -0.14 -1.42 8.09 -25.83 -0.21 -1.63 16 19 C -0.13 -1.54 7.63 -25.92 -0.20 -1.73 16 20 H 0.07 0.90 8.14 -51.94 -0.42 0.48 16 21 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.07 0.73 7.41 -51.93 -0.38 0.35 16 23 H 0.05 1.10 7.20 -51.93 -0.37 0.73 16 24 H 0.06 1.40 7.57 -51.93 -0.39 1.01 16 25 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.11 1.25 7.28 -51.93 -0.38 0.87 16 27 H 0.09 1.33 7.91 -51.93 -0.41 0.92 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 LS Contribution 272.87 15.07 4.11 4.11 Total: -1.00 -32.15 272.87 -6.38 -38.52 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -4.48 Total: -1.75 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.08 Total: -14.61 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.69 Total: -38.20 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: 0.06 Total: -4.31 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.15 -6.38 -38.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260656979.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.245 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds