Wall clock time and date at job start Mon Mar 30 2020 04:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 120.00721 * 2 1 3 5 5 C 1.38279 * 119.97344 * 59.72415 * 4 2 1 6 6 C 1.38249 * 120.11195 * 179.72378 * 5 4 2 7 7 C 1.38167 * 120.05241 * 0.54631 * 6 5 4 8 8 C 1.38714 * 119.94494 * 359.72919 * 7 6 5 9 9 O 1.35898 * 120.05628 * 179.97438 * 8 7 6 10 10 C 1.38120 * 119.96931 * 239.99403 * 4 2 1 11 11 C 1.53004 * 109.46471 * 240.00357 * 2 1 3 12 12 H 1.09000 * 109.47211 * 299.99520 * 11 2 1 13 13 N 1.46904 * 109.46799 * 180.02562 * 11 2 1 14 14 C 1.50701 * 109.47211 * 60.00494 * 11 2 1 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 2 16 16 C 1.37871 * 119.99694 * 180.27574 * 14 11 2 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 11 19 19 H 1.48504 * 109.47266 * 60.00049 * 18 16 14 20 20 H 1.48504 * 109.46970 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47383 * 299.99456 * 18 16 14 22 22 H 1.08995 * 109.47438 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46658 * 299.99805 * 1 2 3 24 24 H 1.08996 * 109.47069 * 59.99184 * 1 2 3 25 25 H 1.08000 * 119.94650 * 359.97438 * 5 4 2 26 26 H 1.08003 * 119.97481 * 180.25219 * 6 5 4 27 27 H 1.07998 * 120.02977 * 179.69959 * 7 6 5 28 28 H 0.96707 * 113.99687 * 270.01847 * 9 8 7 29 29 H 1.08006 * 120.02989 * 0.02868 * 10 4 2 30 30 H 1.00894 * 111.00177 * 176.04478 * 13 11 2 31 31 H 1.00906 * 110.99862 * 300.00256 * 13 11 2 32 32 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 1.2304 5 6 1.6932 -2.0328 1.4514 6 6 2.1571 -2.6891 2.5762 7 6 2.9518 -2.0216 3.4884 8 6 3.2887 -0.6936 3.2718 9 8 4.0698 -0.0347 4.1678 10 6 2.8265 -0.0389 2.1392 11 6 2.0399 -0.7212 -1.2494 12 1 1.6766 -1.7489 -1.2494 13 7 3.5089 -0.7218 -1.2491 14 6 1.5376 -0.0106 -2.4798 15 1 0.9164 0.8673 -2.3805 16 6 1.8659 -0.4850 -3.7320 17 7 2.6220 -1.5542 -3.8528 18 14 1.2368 0.3912 -5.2571 19 1 1.7313 1.7915 -5.2629 20 1 1.7278 -0.3116 -6.4697 21 1 -0.2482 0.3906 -5.2513 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 1.0683 -2.5549 0.7420 26 1 1.8943 -3.7230 2.7446 27 1 3.3100 -2.5333 4.3694 28 1 3.5743 0.4107 4.8687 29 1 3.0871 0.9953 1.9686 30 1 3.8705 -1.2479 -2.0305 31 1 3.8709 0.2201 -1.2488 32 1 2.8526 -1.8881 -4.7338 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260726764.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:34 Heat of formation + Delta-G solvation = -56.101397 kcal Electronic energy + Delta-G solvation = -14912.734983 eV Core-core repulsion = 12450.667473 eV Total energy + Delta-G solvation = -2462.067510 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.69407 -38.41631 -36.72906 -34.31093 -32.21403 -31.04940 -29.87760 -27.54247 -25.18289 -23.53634 -23.10608 -20.88466 -18.74845 -18.43491 -17.23647 -16.74875 -16.49499 -16.03321 -15.65538 -15.03788 -14.83582 -14.42825 -14.23629 -13.52449 -13.13502 -12.97737 -12.88498 -12.77768 -12.64358 -12.35755 -12.18545 -11.89108 -11.74382 -11.22635 -11.02682 -10.60162 -9.59195 -9.30185 -9.09035 -8.06161 -6.30477 0.48437 0.59572 1.39163 1.39960 1.47362 2.38950 2.89573 3.11410 3.38850 4.01623 4.06182 4.30101 4.38342 4.51766 4.57678 4.68479 4.80144 4.95116 5.10836 5.18691 5.23272 5.32654 5.42249 5.57668 5.59242 5.70268 5.73864 5.98945 6.08462 6.19289 6.74080 6.96796 7.03722 7.17976 7.45383 8.88078 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047520 B = 0.006978 C = 0.006935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.080929 B = 4011.510220 C = 4036.239432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.041 4.041 3 H 0.057 0.943 4 C -0.027 4.027 5 C -0.138 4.138 6 C -0.102 4.102 7 C -0.165 4.165 8 C 0.100 3.900 9 O -0.509 6.509 10 C -0.158 4.158 11 C 0.227 3.773 12 H 0.005 0.995 13 N -0.843 5.843 14 C -0.561 4.561 15 H 0.056 0.944 16 C 0.018 3.982 17 N -0.920 5.920 18 Si 0.953 3.047 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.272 1.272 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.053 0.947 25 H 0.110 0.890 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.407 0.593 29 H 0.121 0.879 30 H 0.339 0.661 31 H 0.312 0.688 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 1.470 12.691 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.060 4.060 3 H 0.076 0.924 4 C -0.027 4.027 5 C -0.156 4.156 6 C -0.120 4.120 7 C -0.183 4.183 8 C 0.056 3.944 9 O -0.322 6.322 10 C -0.176 4.176 11 C 0.117 3.883 12 H 0.023 0.977 13 N -0.370 5.370 14 C -0.600 4.600 15 H 0.074 0.926 16 C -0.181 4.181 17 N -0.560 5.560 18 Si 0.779 3.221 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.072 0.928 25 H 0.128 0.872 26 H 0.163 0.837 27 H 0.163 0.837 28 H 0.265 0.735 29 H 0.139 0.861 30 H 0.153 0.847 31 H 0.120 0.880 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.726 0.754 12.934 13.070 hybrid contribution -0.613 0.978 -1.943 2.260 sum -2.339 1.732 10.990 11.369 Atomic orbital electron populations 1.21645 0.93913 1.01451 1.01171 1.20172 0.95981 0.97852 0.92025 0.92432 1.19761 0.94704 0.94223 0.94028 1.21074 1.01857 0.94568 0.98088 1.21211 0.96868 1.00465 0.93448 1.21494 1.00531 0.94514 1.01755 1.18487 0.93283 0.91648 0.90984 1.84770 1.35290 1.70638 1.41483 1.21323 0.99746 1.00759 0.95798 1.18813 0.85984 0.93575 0.89956 0.97711 1.59456 1.09599 1.17372 1.50568 1.22288 1.32113 1.12856 0.92778 0.92610 1.25739 0.95228 0.95338 1.01846 1.69860 1.37912 1.23831 1.24407 0.85693 0.78802 0.78648 0.78926 1.19905 1.21270 1.19772 0.93365 0.92021 0.92769 0.87187 0.83685 0.83702 0.73487 0.86096 0.84710 0.87969 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 8.75 71.98 0.63 -3.90 16 2 C -0.04 -1.68 2.27 -11.54 -0.03 -1.70 16 3 H 0.06 2.36 7.87 -2.39 -0.02 2.34 16 4 C -0.03 -1.00 4.38 -19.88 -0.09 -1.09 16 5 C -0.14 -4.87 8.71 22.28 0.19 -4.67 16 6 C -0.10 -2.98 10.04 22.26 0.22 -2.76 16 7 C -0.16 -4.55 9.99 22.37 0.22 -4.33 16 8 C 0.10 3.01 6.70 22.51 0.15 3.16 16 9 O -0.51 -12.88 13.50 -92.41 -1.25 -14.13 16 10 C -0.16 -5.36 9.61 22.36 0.21 -5.15 16 11 C 0.23 11.18 2.12 44.17 0.09 11.28 16 12 H 0.00 0.27 7.40 -2.39 -0.02 0.25 16 13 N -0.84 -41.40 8.77 -171.79 -1.51 -42.91 16 14 C -0.56 -29.68 8.00 25.60 0.20 -29.48 16 15 H 0.06 2.89 6.71 -2.91 -0.02 2.87 16 16 C 0.02 0.97 5.38 84.65 0.46 1.42 16 17 N -0.92 -51.77 11.55 21.45 0.25 -51.53 16 18 Si 0.95 42.84 29.54 68.60 2.03 44.86 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H 0.05 1.74 7.37 -2.39 -0.02 1.72 16 23 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 24 H 0.05 2.08 6.62 -2.39 -0.02 2.07 16 25 H 0.11 4.03 7.09 -2.91 -0.02 4.01 16 26 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 27 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 28 H 0.41 5.72 9.06 -74.05 -0.67 5.05 16 29 H 0.12 3.95 7.94 -2.91 -0.02 3.92 16 30 H 0.34 18.13 7.09 -89.70 -0.64 17.50 16 31 H 0.31 14.77 8.99 -89.69 -0.81 13.97 16 32 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -60.90 269.34 0.83 -60.07 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.96 Total: 40.86 kcal Atomic # 6 Polarization: -39.50 SS G_CDS: 2.28 Total: -37.23 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -1.26 Total: -94.44 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -1.25 Total: -14.13 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -60.90 0.83 -60.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726764.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.966 kcal (2) G-P(sol) polarization free energy of solvation -60.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds