Wall clock time and date at job start Mon Mar 30 2020 04:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46707 * 2 1 4 4 C 1.50699 * 109.46973 * 240.00787 * 2 1 3 5 5 C 1.38295 * 119.97082 * 300.57045 * 4 2 1 6 6 C 1.38244 * 120.10753 * 180.02562 * 5 4 2 7 7 C 1.38157 * 120.05978 * 359.95089 * 6 5 4 8 8 C 1.38714 * 119.94460 * 0.02562 * 7 6 5 9 9 O 1.35898 * 120.05380 * 180.02562 * 8 7 6 10 10 C 1.38118 * 119.97434 * 120.29646 * 4 2 1 11 11 C 1.52991 * 109.47220 * 120.00401 * 2 1 3 12 12 H 1.09002 * 109.47392 * 62.41304 * 11 2 1 13 13 N 1.46900 * 109.47280 * 302.41137 * 11 2 1 14 14 C 1.50712 * 109.47018 * 182.41311 * 11 2 1 15 15 H 1.07995 * 119.99546 * 359.97438 * 14 11 2 16 16 C 1.37872 * 119.99834 * 180.02562 * 14 11 2 17 17 N 1.31521 * 120.00280 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 119.99961 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47463 * 89.99474 * 18 16 14 20 20 H 1.48496 * 109.47013 * 209.99770 * 18 16 14 21 21 H 1.48501 * 109.46709 * 329.99517 * 18 16 14 22 22 H 1.08998 * 109.47025 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47109 * 299.99722 * 1 2 3 24 24 H 1.09001 * 109.47398 * 59.99287 * 1 2 3 25 25 H 1.07997 * 119.94207 * 359.97438 * 5 4 2 26 26 H 1.08005 * 119.96595 * 179.97438 * 6 5 4 27 27 H 1.08005 * 120.02918 * 180.02562 * 7 6 5 28 28 H 0.96699 * 113.99996 * 90.00083 * 9 8 7 29 29 H 1.08003 * 120.02883 * 359.97438 * 10 4 2 30 30 H 1.00900 * 110.99999 * 305.88987 * 13 11 2 31 31 H 1.00891 * 110.99744 * 69.84805 * 13 11 2 32 32 H 0.96999 * 119.99795 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 6 1.6881 -2.0307 -1.4550 6 6 2.1477 -2.6852 -2.5826 7 6 2.9515 -2.0209 -3.4889 8 6 3.2978 -0.6962 -3.2664 9 8 4.0879 -0.0405 -4.1566 10 6 2.8314 -0.0402 -2.1362 11 6 2.0400 -0.7213 1.2491 12 1 1.7124 -1.7607 1.2277 13 7 1.5034 -0.0634 2.4479 14 6 3.5459 -0.6697 1.2793 15 1 4.0851 -0.1725 0.4866 16 6 4.2351 -1.2580 2.3184 17 7 3.5784 -1.8639 3.2835 18 14 6.1016 -1.1935 2.3563 19 1 6.5402 0.0247 3.0835 20 1 6.6246 -2.3985 3.0487 21 1 6.6238 -1.1553 0.9667 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.0599 -2.5517 -0.7477 26 1 1.8778 -3.7166 -2.7554 27 1 3.3100 -2.5325 -4.3699 28 1 3.5991 0.4114 -4.8580 29 1 3.0959 0.9925 -1.9630 30 1 1.7121 0.9238 2.4427 31 1 0.5108 -0.2227 2.5341 32 1 4.0633 -2.2775 4.0147 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260726776.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:46 Heat of formation + Delta-G solvation = -26.124088 kcal Electronic energy + Delta-G solvation = -15064.828540 eV Core-core repulsion = 12604.060943 eV Total energy + Delta-G solvation = -2460.767597 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43027 -37.10843 -35.20753 -32.24180 -30.75918 -29.51053 -28.18491 -26.20893 -23.44803 -22.20953 -21.45572 -19.34416 -17.35620 -16.42558 -15.99964 -15.20155 -14.83955 -14.50172 -14.10559 -13.65124 -13.29374 -13.00206 -12.64162 -11.88993 -11.75183 -11.60007 -11.46079 -11.18977 -10.87421 -10.76606 -10.49691 -10.25016 -9.89318 -9.53484 -8.90993 -8.33803 -8.31489 -8.09193 -6.89072 -5.77908 -3.89840 1.75967 1.88389 3.39901 3.46427 3.52023 4.15096 4.53708 4.57058 5.27728 5.35890 5.48216 5.57272 5.72050 5.83502 5.90872 5.98838 6.10027 6.27242 6.34953 6.46414 6.57009 6.60544 6.81401 6.86431 6.94277 7.21207 7.33152 7.58213 7.97144 8.01515 8.32356 8.71669 9.07270 9.26285 9.78362 11.26994 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022834 B = 0.010879 C = 0.008598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.957616 B = 2573.062825 C = 3255.976899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.064 0.936 4 C -0.007 4.007 5 C -0.117 4.117 6 C -0.105 4.105 7 C -0.166 4.166 8 C 0.096 3.904 9 O -0.502 6.502 10 C -0.145 4.145 11 C 0.236 3.764 12 H 0.038 0.962 13 N -0.813 5.813 14 C -0.526 4.526 15 H 0.051 0.949 16 C 0.084 3.916 17 N -0.851 5.851 18 Si 0.876 3.124 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.042 0.958 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.381 0.619 29 H 0.120 0.880 30 H 0.314 0.686 31 H 0.297 0.703 32 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 2.054 -11.228 12.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.082 0.918 4 C -0.008 4.008 5 C -0.135 4.135 6 C -0.123 4.123 7 C -0.185 4.185 8 C 0.053 3.947 9 O -0.311 6.311 10 C -0.164 4.164 11 C 0.126 3.874 12 H 0.056 0.944 13 N -0.338 5.338 14 C -0.565 4.565 15 H 0.070 0.930 16 C -0.122 4.122 17 N -0.487 5.487 18 Si 0.704 3.296 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.235 0.765 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.108 0.892 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.711 1.235 -10.259 11.356 hybrid contribution 0.334 0.761 -0.892 1.219 sum -4.377 1.996 -11.150 12.144 Atomic orbital electron populations 1.21881 0.96245 1.01400 1.00530 1.21350 0.93802 0.99898 0.96263 0.91755 1.19663 0.93767 0.93719 0.93640 1.20983 1.01154 0.94445 0.96917 1.20905 0.97645 0.99266 0.94530 1.21173 1.01180 0.94892 1.01245 1.18424 0.93808 0.91274 0.91235 1.84851 1.34731 1.70288 1.41237 1.21271 0.99322 1.00562 0.95207 1.19080 0.94642 0.92878 0.80770 0.94441 1.59174 1.15060 1.15199 1.44385 1.20931 0.90306 1.37382 1.07881 0.93045 1.24903 0.97046 0.94755 0.95488 1.70093 1.34249 1.34247 1.10062 0.86879 0.87351 0.77354 0.78052 1.20838 1.21410 1.20022 0.92827 0.92834 0.93882 0.86103 0.86335 0.86452 0.76523 0.86215 0.87497 0.89229 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.62 37.16 0.32 -1.97 16 2 C -0.09 -1.79 2.20 -91.78 -0.20 -1.99 16 3 H 0.06 1.27 7.87 -51.93 -0.41 0.86 16 4 C -0.01 -0.13 3.97 -104.65 -0.42 -0.55 16 5 C -0.12 -2.12 8.68 -39.56 -0.34 -2.47 16 6 C -0.11 -1.70 10.04 -39.61 -0.40 -2.10 16 7 C -0.17 -2.67 9.99 -39.44 -0.39 -3.06 16 8 C 0.10 1.65 6.71 -39.22 -0.26 1.39 16 9 O -0.50 -7.55 13.50 -19.42 -0.26 -7.81 16 10 C -0.14 -2.67 9.61 -39.44 -0.38 -3.05 16 11 C 0.24 5.63 2.11 -68.86 -0.15 5.49 16 12 H 0.04 0.99 7.34 -51.93 -0.38 0.61 16 13 N -0.81 -18.63 8.26 -5.65 -0.05 -18.68 16 14 C -0.53 -14.49 8.21 -34.44 -0.28 -14.77 16 15 H 0.05 1.45 7.52 -52.49 -0.39 1.05 16 16 C 0.08 2.40 5.39 -17.82 -0.10 2.30 16 17 N -0.85 -25.19 12.77 55.43 0.71 -24.48 16 18 Si 0.88 22.15 29.54 -169.99 -5.02 17.13 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 22 H 0.05 0.84 7.35 -51.93 -0.38 0.46 16 23 H 0.05 0.81 6.88 -51.93 -0.36 0.45 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.12 2.13 7.08 -52.49 -0.37 1.76 16 26 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 27 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 28 H 0.38 3.54 9.06 45.56 0.41 3.95 16 29 H 0.12 2.12 7.94 -52.48 -0.42 1.70 16 30 H 0.31 6.83 8.97 -39.29 -0.35 6.48 16 31 H 0.30 6.00 7.66 -39.30 -0.30 5.70 16 32 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 271.16 15.07 4.09 4.09 Total: -1.00 -31.74 271.16 -6.49 -38.23 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -3.36 Total: 12.32 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.60 Total: -20.79 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.66 Total: -43.15 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.26 Total: -7.81 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.74 -6.49 -38.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260726776.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.102 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds