Wall clock time and date at job start Mon Mar 30 2020 02:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.47384 * 2 1 4 4 O 1.34748 * 126.44418 * 270.02477 * 3 2 1 5 5 C 1.33969 * 107.75520 * 179.97438 * 4 3 2 6 6 C 1.50703 * 125.61859 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47064 * 270.02285 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47432 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46890 * 120.00210 * 11 9 7 14 14 H 1.48501 * 109.47062 * 240.00257 * 11 9 7 15 15 N 1.30253 * 108.76149 * 0.26368 * 5 4 3 16 16 C 1.34332 * 126.44097 * 89.99850 * 3 2 1 17 17 C 1.50699 * 126.16651 * 0.02562 * 16 3 2 18 18 C 1.53001 * 117.49874 * 188.74754 * 17 16 3 19 19 C 1.53003 * 117.49981 * 120.08684 * 17 16 3 20 20 H 1.09000 * 109.47208 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47048 * 300.00303 * 1 2 3 22 22 H 1.09003 * 109.46940 * 60.00013 * 1 2 3 23 23 H 1.09006 * 109.47389 * 240.00043 * 2 1 3 24 24 H 1.09000 * 109.47520 * 120.00456 * 2 1 3 25 25 H 1.09002 * 109.47152 * 150.02377 * 6 5 4 26 26 H 1.09001 * 109.46980 * 30.02478 * 6 5 4 27 27 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 28 28 H 1.08996 * 115.54827 * 334.41291 * 17 16 3 29 29 H 1.08997 * 117.49521 * 359.97438 * 18 17 16 30 30 H 1.08998 * 117.49900 * 145.01808 * 18 17 16 31 31 H 1.08996 * 117.49452 * 214.98037 * 19 17 16 32 32 H 1.09004 * 117.49785 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2988 2.1756 -1.0840 5 6 2.7215 3.3722 -0.6547 6 6 3.1285 4.5265 -1.5339 7 6 4.6038 4.4380 -1.8283 8 1 5.1882 3.6267 -1.4199 9 6 5.2073 5.3921 -2.6199 10 7 4.4956 6.3796 -3.1175 11 14 7.0359 5.2819 -2.9853 12 1 7.6040 4.0860 -2.3127 13 1 7.2416 5.1690 -4.4517 14 1 7.7156 6.5027 -2.4826 15 7 2.7276 3.3718 0.6478 16 6 2.2984 2.1731 1.0807 17 6 2.1487 1.7482 2.5187 18 6 2.3103 2.8247 3.5939 19 6 3.4020 1.7701 3.3960 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 2.9157 5.4654 -1.0226 26 1 2.5685 4.4866 -2.4682 27 1 4.9202 7.0510 -3.6741 28 1 1.4196 0.9591 2.7023 29 1 2.5253 3.8401 3.2610 30 1 1.6878 2.7435 4.4850 31 1 3.4973 0.9956 4.1569 32 1 4.3350 2.0915 2.9329 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260808027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:18 Heat of formation + Delta-G solvation = 22.998119 kcal Electronic energy + Delta-G solvation = -14660.100747 eV Core-core repulsion = 12201.463249 eV Total energy + Delta-G solvation = -2458.637498 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.53863 -37.08989 -34.23416 -33.49008 -33.09975 -30.10716 -27.26261 -24.06288 -23.83345 -22.15249 -21.72013 -20.35969 -19.54529 -16.70353 -16.01508 -15.67247 -15.27600 -14.64222 -14.54958 -14.06696 -13.27459 -12.74815 -12.53237 -12.21392 -11.83989 -11.59327 -11.45418 -11.33586 -11.16898 -10.99115 -10.86023 -10.76292 -10.25244 -10.07552 -9.88778 -9.57475 -9.43515 -8.54518 -7.69472 -6.16290 -4.20813 2.17669 3.26574 3.31200 3.35541 3.42747 3.50818 4.22183 4.37800 4.72652 4.96985 5.01298 5.13460 5.18185 5.21724 5.26524 5.35538 5.66456 5.80788 5.81462 5.85227 5.93351 6.02585 6.18818 6.30112 6.44952 6.62441 6.78883 7.07871 7.31213 7.32151 7.78351 8.06553 8.70034 8.80202 9.42993 10.93960 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030117 B = 0.007340 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.487746 B = 3813.618289 C = 4259.247251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C -0.083 4.083 4 O -0.203 6.203 5 C 0.251 3.749 6 C 0.105 3.895 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.904 3.096 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.281 1.281 15 N -0.504 5.504 16 C 0.017 3.983 17 C -0.077 4.077 18 C -0.163 4.163 19 C -0.169 4.169 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.265 0.735 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 -10.877 8.498 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.066 4.066 3 C -0.136 4.136 4 O -0.091 6.091 5 C 0.045 3.955 6 C 0.067 3.933 7 C -0.556 4.556 8 H 0.078 0.922 9 C -0.140 4.140 10 N -0.529 5.529 11 Si 0.731 3.269 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.207 1.207 15 N -0.232 5.232 16 C -0.102 4.102 17 C -0.095 4.095 18 C -0.200 4.200 19 C -0.206 4.206 20 H 0.080 0.920 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.124 0.876 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.724 -10.210 8.712 14.592 hybrid contribution 0.800 -0.534 -0.678 1.177 sum -4.924 -10.745 8.034 14.291 Atomic orbital electron populations 1.21786 0.94493 1.01680 1.02607 1.19851 0.95816 0.87500 1.03463 1.22737 1.09853 0.96173 0.84879 1.84438 1.64421 1.24327 1.35955 1.27665 0.92052 0.85632 0.90101 1.18049 0.97375 0.85715 0.92176 1.20912 0.91965 1.11214 1.31523 0.92176 1.24946 0.98868 0.94878 0.95277 1.69944 1.36103 1.13247 1.33645 0.86334 0.84264 0.78219 0.78068 1.19640 1.20720 1.20655 1.70331 1.21360 1.21465 1.10042 1.20446 1.04287 0.91088 0.94427 1.20109 1.01362 1.01965 0.86112 1.22926 1.01826 0.96477 0.98772 1.22966 0.93889 1.02001 1.01770 0.92020 0.92382 0.92335 0.90463 0.89444 0.91738 0.93355 0.92494 0.86873 0.87569 0.88997 0.88807 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.89 37.16 0.37 -1.30 16 2 C -0.03 -0.38 6.23 -27.88 -0.17 -0.55 16 3 C -0.08 -1.57 6.64 -35.69 -0.24 -1.80 16 4 O -0.20 -4.60 10.78 5.37 0.06 -4.54 16 5 C 0.25 6.15 7.53 -12.95 -0.10 6.05 16 6 C 0.10 2.78 5.60 -29.03 -0.16 2.62 16 7 C -0.52 -14.78 9.09 -34.44 -0.31 -15.09 16 8 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 9 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 10 N -0.89 -25.91 13.29 55.43 0.74 -25.18 16 11 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 15 N -0.50 -11.75 10.92 -7.35 -0.08 -11.83 16 16 C 0.02 0.33 6.61 -82.81 -0.55 -0.22 16 17 C -0.08 -1.16 5.79 -91.77 -0.53 -1.69 16 18 C -0.16 -2.31 10.15 -26.69 -0.27 -2.58 16 19 C -0.17 -2.33 10.24 -26.69 -0.27 -2.61 16 20 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.09 0.98 7.84 -51.93 -0.41 0.57 16 25 H 0.06 1.77 8.14 -51.93 -0.42 1.35 16 26 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.11 1.38 8.04 -51.93 -0.42 0.96 16 29 H 0.11 1.77 7.91 -51.93 -0.41 1.35 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 LS Contribution 282.21 15.07 4.25 4.25 Total: -1.00 -30.85 282.21 -6.97 -37.82 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.58 Total: -1.59 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.34 Total: -15.50 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.66 Total: -37.01 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: 0.06 Total: -4.54 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.85 -6.97 -37.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260808027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.817 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds