Wall clock time and date at job start Mon Mar 30 2020 02:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.34599 * 126.32642 * 2 1 4 4 C 1.34947 * 107.61300 * 179.97438 * 3 2 1 5 5 C 1.39795 * 125.79994 * 180.26400 * 4 3 2 6 6 H 1.07995 * 120.00086 * 173.86562 * 5 4 3 7 7 C 1.40344 * 119.99849 * 353.85637 * 5 4 3 8 8 N 1.30625 * 120.00207 * 6.02688 * 7 5 4 9 9 Si 1.86802 * 120.00004 * 186.01574 * 7 5 4 10 10 H 1.48498 * 109.46680 * 94.98747 * 9 7 5 11 11 H 1.48493 * 109.47265 * 214.98612 * 9 7 5 12 12 H 1.48500 * 109.46956 * 334.98790 * 9 7 5 13 13 N 1.32814 * 108.39879 * 0.02562 * 4 3 2 14 14 C 1.33061 * 108.65489 * 359.97438 * 13 4 3 15 15 C 1.50697 * 126.01286 * 180.02562 * 14 13 4 16 16 C 1.54269 * 110.03322 * 57.14111 * 15 14 13 17 17 C 1.54888 * 104.19480 * 217.10499 * 16 15 14 18 18 C 1.54890 * 102.74692 * 37.94570 * 17 16 15 19 19 C 1.53876 * 110.02912 * 299.97521 * 15 14 13 20 20 H 1.09000 * 109.47474 * 270.00662 * 1 2 3 21 21 H 1.09000 * 109.47109 * 30.00532 * 1 2 3 22 22 H 1.08999 * 109.47480 * 150.00074 * 1 2 3 23 23 H 0.96994 * 120.00701 * 179.97438 * 8 7 5 24 24 H 1.08994 * 110.01765 * 178.58954 * 15 14 13 25 25 H 1.09000 * 110.48571 * 335.78929 * 16 15 14 26 26 H 1.09001 * 110.48192 * 98.42825 * 16 15 14 27 27 H 1.08992 * 110.76151 * 279.62797 * 17 16 15 28 28 H 1.08998 * 110.75113 * 156.25691 * 17 16 15 29 29 H 1.08999 * 110.48273 * 203.37601 * 18 17 16 30 30 H 1.09002 * 110.60052 * 80.78913 * 18 17 16 31 31 H 1.09000 * 110.03223 * 238.56686 * 19 15 14 32 32 H 1.08997 * 110.03639 * 0.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3043 1.0844 0.0000 4 6 3.5824 0.6514 0.0006 5 6 4.7207 1.4630 0.0060 6 1 5.7000 1.0189 0.1059 7 6 4.5908 2.8548 -0.1186 8 7 3.4049 3.4025 -0.1212 9 14 6.1137 3.9243 -0.2805 10 1 6.3904 4.1773 -1.7174 11 1 5.8873 5.2166 0.4150 12 1 7.2741 3.2291 0.3322 13 7 3.5751 -0.6767 0.0004 14 6 2.3121 -1.0954 0.0002 15 6 1.8546 -2.5312 0.0005 16 6 2.4432 -3.2731 1.2183 17 6 2.7597 -4.6915 0.6824 18 6 3.2743 -4.4083 -0.7508 19 6 2.3831 -3.2530 -1.2515 20 1 -0.3634 0.0001 1.0276 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3634 -0.8900 -0.5138 23 1 3.3150 4.3644 -0.2069 24 1 0.7659 -2.5759 0.0255 25 1 3.3544 -2.7823 1.5602 26 1 1.7110 -3.3244 2.0241 27 1 1.8587 -5.3042 0.6552 28 1 3.5340 -5.1677 1.2838 29 1 3.1487 -5.2881 -1.3820 30 1 4.3201 -4.1016 -0.7292 31 1 1.5508 -3.6487 -1.8336 32 1 2.9708 -2.5649 -1.8591 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260825901.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:18 Heat of formation + Delta-G solvation = -20.729089 kcal Electronic energy + Delta-G solvation = -15051.894571 eV Core-core repulsion = 12591.360919 eV Total energy + Delta-G solvation = -2460.533652 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.99176 -37.48934 -33.75025 -32.60153 -31.15725 -28.25402 -28.17743 -27.45450 -23.64462 -20.87932 -20.22821 -19.94492 -18.58437 -17.36525 -15.28744 -15.13316 -14.86292 -14.57529 -13.92608 -13.26739 -12.84638 -12.69517 -12.42641 -12.11588 -11.61664 -11.34871 -11.26663 -11.12417 -10.81510 -10.68274 -10.59215 -10.38609 -10.22112 -10.17349 -9.91955 -9.51956 -9.04229 -8.42739 -7.18327 -6.88340 -4.59530 2.88899 3.03850 3.09895 3.34833 3.86189 4.14915 4.82214 5.10727 5.12671 5.23334 5.37412 5.78769 5.87079 5.96560 6.03763 6.05935 6.09969 6.18338 6.28957 6.33756 6.35182 6.39589 6.47654 6.72255 6.75131 6.85082 6.94696 7.04436 7.18302 7.83249 8.01405 8.26389 8.57577 8.75828 9.92354 10.15246 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038367 B = 0.007943 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.615768 B = 3524.370483 C = 4015.847436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 C -0.196 4.196 3 O -0.184 6.184 4 C 0.346 3.654 5 C -0.432 4.432 6 H 0.109 0.891 7 C 0.070 3.930 8 N -0.778 5.778 9 Si 0.929 3.071 10 H -0.267 1.267 11 H -0.275 1.275 12 H -0.258 1.258 13 N -0.603 5.603 14 C 0.027 3.973 15 C -0.004 4.004 16 C -0.112 4.112 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.110 4.110 20 H 0.051 0.949 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.285 0.715 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 -6.995 -0.133 7.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.252 4.252 3 O -0.076 6.076 4 C 0.161 3.839 5 C -0.468 4.468 6 H 0.127 0.873 7 C -0.152 4.152 8 N -0.406 5.406 9 Si 0.753 3.247 10 H -0.192 1.192 11 H -0.200 1.200 12 H -0.181 1.181 13 N -0.336 5.336 14 C -0.098 4.098 15 C -0.023 4.023 16 C -0.149 4.149 17 C -0.160 4.160 18 C -0.156 4.156 19 C -0.148 4.148 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.194 -7.137 -0.142 7.468 hybrid contribution -0.114 1.101 -0.102 1.112 sum -2.307 -6.036 -0.244 6.466 Atomic orbital electron populations 1.19675 0.87753 1.01266 1.00643 1.22580 0.93492 0.86094 1.23022 1.84783 1.17214 1.32638 1.72949 1.22026 0.82576 0.87513 0.91784 1.18358 0.91382 0.89680 1.47357 0.87342 1.26097 0.98054 0.98747 0.92259 1.69723 1.24171 1.13325 1.33345 0.85944 0.80832 0.78610 0.79330 1.19217 1.19999 1.18147 1.70732 1.20118 1.09083 1.33660 1.20932 0.90390 0.94013 1.04464 1.19949 0.98124 0.89409 0.94797 1.22369 1.01364 0.94482 0.96734 1.22472 0.99986 0.97058 0.96505 1.22300 1.00166 0.97361 0.95822 1.22102 0.98546 0.96833 0.97341 0.93013 0.92566 0.91914 0.90460 0.91303 0.90453 0.92648 0.92208 0.92176 0.92669 0.91464 0.92872 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.70 10.08 36.00 0.36 -0.34 16 2 C -0.20 -4.96 7.42 -35.13 -0.26 -5.22 16 3 O -0.18 -5.39 9.09 3.10 0.03 -5.36 16 4 C 0.35 10.17 7.65 -16.54 -0.13 10.04 16 5 C -0.43 -12.09 9.45 -38.21 -0.36 -12.45 16 6 H 0.11 2.89 7.86 -52.49 -0.41 2.48 16 7 C 0.07 1.82 5.49 -17.27 -0.09 1.72 16 8 N -0.78 -20.99 12.00 55.57 0.67 -20.33 16 9 Si 0.93 18.83 29.57 -169.99 -5.03 13.81 16 10 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 11 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 12 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 13 N -0.60 -16.69 11.11 -9.64 -0.11 -16.79 16 14 C 0.03 0.66 5.33 -82.88 -0.44 0.22 16 15 C 0.00 -0.07 3.30 -90.65 -0.30 -0.37 16 16 C -0.11 -1.96 6.35 -25.07 -0.16 -2.12 16 17 C -0.12 -1.76 6.91 -24.74 -0.17 -1.93 16 18 C -0.12 -1.82 6.83 -25.07 -0.17 -1.99 16 19 C -0.11 -1.93 6.45 -25.61 -0.17 -2.10 16 20 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 21 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 22 H 0.06 1.04 7.21 -51.93 -0.37 0.66 16 23 H 0.28 6.86 8.29 -40.82 -0.34 6.52 16 24 H 0.07 1.19 6.89 -51.93 -0.36 0.83 16 25 H 0.08 1.58 7.66 -51.93 -0.40 1.18 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.42 7.67 -51.93 -0.40 1.02 16 LS Contribution 269.06 15.07 4.05 4.05 Total: -1.00 -30.67 269.06 -6.73 -37.40 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.46 Total: 1.75 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -1.89 Total: -14.53 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.56 Total: -37.12 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: 0.03 Total: -5.36 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.67 -6.73 -37.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260825901.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.669 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds