Wall clock time and date at job start Mon Mar 30 2020 04:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.41152 * 2 1 4 4 C 1.53004 * 109.41652 * 119.86170 * 2 1 3 5 5 C 1.53432 * 109.81440 * 48.15235 * 4 2 1 6 6 C 1.50793 * 108.11668 * 50.63923 * 5 4 2 7 7 C 1.33977 * 128.94267 * 163.43506 * 6 5 4 8 8 N 1.36660 * 108.05317 * 180.23058 * 7 6 5 9 9 H 0.96995 * 125.60230 * 179.97438 * 8 7 6 10 10 C 1.36661 * 108.79669 * 359.93673 * 8 7 6 11 11 C 1.33968 * 108.05613 * 359.93238 * 10 8 7 12 12 C 1.50799 * 128.94731 * 180.35822 * 11 10 8 13 13 O 1.42892 * 109.73835 * 282.94697 * 12 11 10 14 14 C 1.50698 * 109.73054 * 43.63855 * 12 11 10 15 15 H 1.08002 * 120.00271 * 3.85876 * 14 12 11 16 16 C 1.37876 * 120.00048 * 183.85982 * 14 12 11 17 17 N 1.31512 * 119.99817 * 6.16123 * 16 14 12 18 18 Si 1.86794 * 120.00126 * 186.15364 * 16 14 12 19 19 H 1.48498 * 109.47214 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.47226 * 120.00541 * 18 16 14 21 21 H 1.48504 * 109.47246 * 240.00393 * 18 16 14 22 22 H 1.08997 * 109.46770 * 300.13600 * 1 2 3 23 23 H 1.08998 * 109.47119 * 180.13846 * 1 2 3 24 24 H 1.09001 * 109.47036 * 60.13833 * 1 2 3 25 25 H 1.09001 * 109.41459 * 168.25237 * 4 2 1 26 26 H 1.08996 * 109.41269 * 288.11829 * 4 2 1 27 27 H 1.08999 * 109.72968 * 170.30180 * 5 4 2 28 28 H 1.09007 * 109.73013 * 290.94118 * 5 4 2 29 29 H 1.07998 * 125.97830 * 0.22302 * 7 6 5 30 30 H 1.07998 * 125.96819 * 179.91544 * 10 8 7 31 31 H 0.96706 * 113.99978 * 61.33434 * 13 12 11 32 32 H 0.97005 * 119.99857 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8923 1.0281 0.0000 4 6 2.0387 -0.7185 1.2514 5 6 1.3033 -2.0546 1.4191 6 6 1.3789 -2.7990 0.1098 7 6 1.1543 -4.0969 -0.1352 8 7 1.3482 -4.3156 -1.4702 9 1 1.2531 -5.1684 -1.9223 10 6 1.6972 -3.1351 -2.0636 11 6 1.7217 -2.1863 -1.1182 12 6 2.0400 -0.7187 -1.2560 13 8 3.4528 -0.5403 -1.3738 14 6 1.3525 -0.1614 -2.4756 15 1 0.6937 -0.7884 -3.0581 16 6 1.5644 1.1491 -2.8480 17 7 2.4570 1.8770 -2.2131 18 14 0.5839 1.8908 -4.2544 19 1 -0.3492 0.8718 -4.7986 20 1 -0.1912 3.0557 -3.7572 21 1 1.5123 2.3346 -5.3251 22 1 -0.3633 0.5159 0.8888 23 1 -0.3633 -1.0276 0.0025 24 1 -0.3633 0.5117 -0.8912 25 1 3.1084 -0.9036 1.1534 26 1 1.8576 -0.0942 2.1264 27 1 1.7804 -2.6412 2.2042 28 1 0.2608 -1.8708 1.6790 29 1 0.8699 -4.8403 0.5947 30 1 1.9155 -2.9922 -3.1116 31 1 3.8404 -0.9705 -2.1483 32 1 2.6063 2.7989 -2.4754 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260886910.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:21 Heat of formation + Delta-G solvation = -6.815886 kcal Electronic energy + Delta-G solvation = -15944.071124 eV Core-core repulsion = 13484.140794 eV Total energy + Delta-G solvation = -2459.930330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60736 -36.88339 -33.97069 -32.07356 -30.12166 -29.44444 -27.09075 -25.56099 -24.21115 -22.11899 -19.59793 -19.36775 -17.16129 -16.67194 -16.46040 -14.61039 -14.31088 -14.09228 -13.72176 -13.32005 -12.87238 -12.49315 -12.24748 -11.67772 -11.42998 -11.21062 -11.00147 -10.86809 -10.69515 -10.52734 -10.20910 -9.98114 -9.59445 -9.26710 -8.56356 -8.42039 -7.93004 -7.59584 -7.28759 -5.85204 -4.00177 3.03723 3.31534 3.40985 3.44036 3.87438 4.03629 4.49084 5.38157 5.66922 5.83448 5.90454 6.02522 6.07022 6.25737 6.45076 6.61382 6.63410 6.73534 6.77852 6.89872 6.99626 7.09400 7.21552 7.34364 7.62087 7.76991 7.79906 7.94575 8.03585 8.15590 8.36565 8.44830 8.98592 9.55756 9.76981 11.14997 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.012260 C = 0.010686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.196104 B = 2283.279864 C = 2619.577482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.059 4.059 3 H 0.084 0.916 4 C -0.111 4.111 5 C -0.043 4.043 6 C -0.158 4.158 7 C -0.036 4.036 8 N -0.579 5.579 9 H 0.403 0.597 10 C -0.014 4.014 11 C -0.144 4.144 12 C 0.321 3.679 13 O -0.553 6.553 14 C -0.545 4.545 15 H 0.054 0.946 16 C 0.080 3.920 17 N -0.853 5.853 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.286 1.286 22 H 0.024 0.976 23 H 0.044 0.956 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.346 0.654 32 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -8.635 3.091 9.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.078 4.078 3 H 0.102 0.898 4 C -0.149 4.149 5 C -0.081 4.081 6 C -0.166 4.166 7 C -0.165 4.165 8 N -0.176 5.176 9 H 0.237 0.763 10 C -0.142 4.142 11 C -0.151 4.151 12 C 0.281 3.719 13 O -0.355 6.355 14 C -0.583 4.583 15 H 0.073 0.927 16 C -0.125 4.125 17 N -0.488 5.488 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.212 1.212 22 H 0.043 0.957 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.166 0.834 30 H 0.174 0.826 31 H 0.189 0.811 32 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.236 -8.216 3.607 9.247 hybrid contribution -0.639 -0.327 -1.597 1.751 sum -2.875 -8.543 2.010 9.235 Atomic orbital electron populations 1.21691 0.96482 1.00319 0.99759 1.20813 0.94130 1.00687 0.92204 0.89781 1.21632 1.00102 0.94915 0.98252 1.20022 0.99648 0.95621 0.92783 1.19515 1.08085 0.92825 0.96201 1.21076 1.12634 0.97566 0.85246 1.41977 1.58042 1.09802 1.07829 0.76278 1.21379 1.09596 0.84656 0.98602 1.20801 1.04426 0.98411 0.91462 1.17109 0.79223 0.82786 0.92808 1.86480 1.22998 1.78193 1.47801 1.21557 1.28858 0.96565 1.11327 0.92727 1.24985 0.94369 0.97195 0.95937 1.70128 1.30832 1.07968 1.39916 0.86815 0.80472 0.79436 0.82894 1.19881 1.20998 1.21197 0.95705 0.93708 0.91949 0.92137 0.93973 0.93207 0.92147 0.83363 0.82584 0.81092 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 7.99 37.16 0.30 -2.50 16 2 C -0.06 -1.43 2.27 -90.39 -0.20 -1.63 16 3 H 0.08 2.29 7.01 -51.93 -0.36 1.93 16 4 C -0.11 -2.33 5.51 -26.51 -0.15 -2.47 16 5 C -0.04 -0.80 5.66 -27.61 -0.16 -0.95 16 6 C -0.16 -3.16 5.08 -104.85 -0.53 -3.69 16 7 C -0.04 -0.61 11.91 -16.90 -0.20 -0.81 16 8 N -0.58 -9.21 6.10 -13.10 -0.08 -9.29 16 9 H 0.40 4.76 8.96 -40.82 -0.37 4.39 16 10 C -0.01 -0.28 11.27 -16.90 -0.19 -0.47 16 11 C -0.14 -3.19 4.55 -104.85 -0.48 -3.67 16 12 C 0.32 7.97 0.47 -92.65 -0.04 7.93 16 13 O -0.55 -14.45 11.58 -35.23 -0.41 -14.86 16 14 C -0.54 -14.49 6.31 -34.44 -0.22 -14.71 16 15 H 0.05 1.47 7.48 -52.49 -0.39 1.08 16 16 C 0.08 2.18 5.19 -17.82 -0.09 2.09 16 17 N -0.85 -24.25 11.34 55.43 0.63 -23.62 16 18 Si 0.88 20.94 29.54 -169.99 -5.02 15.92 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.04 0.97 5.54 -51.93 -0.29 0.68 16 24 H 0.06 1.50 6.92 -51.93 -0.36 1.15 16 25 H 0.06 1.35 7.74 -51.93 -0.40 0.95 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 1.06 6.96 -51.93 -0.36 0.70 16 29 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.16 2.86 8.06 -52.49 -0.42 2.44 16 31 H 0.35 8.26 9.05 45.56 0.41 8.68 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 254.59 15.07 3.84 3.84 Total: -1.00 -30.44 254.59 -6.38 -36.82 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -3.37 Total: 12.08 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -1.97 Total: -20.89 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.55 Total: -32.91 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.41 Total: -14.86 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.44 -6.38 -36.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260886910.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.008 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds