Wall clock time and date at job start Mon Mar 30 2020 03:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.83910 * 2 1 4 4 C 1.54452 * 110.95213 * 236.25922 * 2 1 3 5 5 C 1.51440 * 104.99748 * 216.27932 * 4 2 1 6 6 O 1.34740 * 141.54705 * 196.88917 * 5 4 2 7 7 C 1.34199 * 109.54673 * 180.02562 * 6 5 4 8 8 C 1.34447 * 108.42612 * 0.02562 * 7 6 5 9 9 C 1.34288 * 110.25517 * 17.18606 * 5 4 2 10 10 C 1.51203 * 110.57586 * 359.50571 * 9 5 4 11 11 C 1.50695 * 110.20885 * 102.43924 * 10 9 5 12 12 H 1.08007 * 120.00292 * 149.37914 * 11 10 9 13 13 C 1.37874 * 120.00140 * 329.38429 * 11 10 9 14 14 N 1.31517 * 119.99870 * 2.71471 * 13 11 10 15 15 Si 1.86799 * 120.00299 * 182.71672 * 13 11 10 16 16 H 1.48496 * 109.47126 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.47299 * 119.99629 * 15 13 11 18 18 H 1.48493 * 109.47519 * 239.99716 * 15 13 11 19 19 C 1.52997 * 110.51267 * 224.62453 * 10 9 5 20 20 N 1.46903 * 109.47150 * 293.33942 * 19 10 9 21 21 H 1.08999 * 109.46784 * 177.42748 * 1 2 3 22 22 H 1.09001 * 109.47365 * 297.42349 * 1 2 3 23 23 H 1.09004 * 109.46970 * 57.42774 * 1 2 3 24 24 H 1.09001 * 110.33361 * 97.40126 * 4 2 1 25 25 H 1.09002 * 110.42182 * 335.21012 * 4 2 1 26 26 H 1.08002 * 125.78121 * 179.97438 * 7 6 5 27 27 H 1.08001 * 126.59644 * 179.97438 * 8 7 6 28 28 H 0.97003 * 119.99667 * 180.02562 * 14 13 11 29 29 H 1.08998 * 109.47260 * 53.34081 * 19 10 9 30 30 H 1.09002 * 109.46920 * 173.33984 * 19 10 9 31 31 H 1.00893 * 110.99947 * 59.88020 * 20 19 10 32 32 H 1.00900 * 110.99752 * 183.83300 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9177 1.0187 0.0000 4 6 2.0823 -0.8012 -1.1994 5 6 3.3237 -1.4900 -0.6723 6 8 4.4439 -2.1110 -1.0906 7 6 5.1599 -2.5095 -0.0278 8 6 4.5026 -2.1467 1.0876 9 6 3.3178 -1.4951 0.6705 10 6 2.0823 -0.8021 1.1992 11 6 1.0710 -1.8202 1.6590 12 1 0.3974 -1.5844 2.4697 13 6 1.0055 -3.0529 1.0450 14 7 1.8605 -3.3601 0.0940 15 14 -0.2976 -4.2868 1.5636 16 1 -1.1305 -3.7020 2.6451 17 1 -1.1589 -4.6160 0.3995 18 1 0.3600 -5.5230 2.0580 19 6 2.4465 0.1409 2.3476 20 7 2.9162 -0.6450 3.4964 21 1 -0.3633 -1.0266 -0.0461 22 1 -0.3634 0.4733 0.9122 23 1 -0.3633 0.5533 -0.8661 24 1 2.3407 -0.1286 -2.0174 25 1 1.3522 -1.5388 -1.5327 26 1 6.1036 -3.0335 -0.0627 27 1 4.8165 -2.3227 2.1059 28 1 1.8141 -4.2273 -0.3382 29 1 3.2361 0.8192 2.0243 30 1 1.5679 0.7176 2.6367 31 1 3.7294 -1.1904 3.2532 32 1 3.1038 -0.0498 4.2892 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260939502.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:54 Heat of formation + Delta-G solvation = 24.911187 kcal Electronic energy + Delta-G solvation = -16187.420010 eV Core-core repulsion = 13728.865469 eV Total energy + Delta-G solvation = -2458.554541 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.97911 -39.14112 -34.73866 -33.78662 -32.70951 -30.54538 -29.27319 -26.26316 -26.10343 -23.26521 -21.55108 -20.69189 -20.16176 -18.33021 -16.86306 -16.54440 -16.17916 -16.05661 -15.39007 -15.18331 -14.88201 -14.14873 -14.01390 -13.38436 -13.15511 -13.04964 -12.82215 -12.56412 -12.38538 -12.15198 -11.95996 -11.62909 -11.22500 -10.96362 -10.64694 -10.37685 -9.81984 -9.16337 -8.76432 -7.29710 -5.85601 1.40325 1.47279 1.52748 1.55105 2.39415 2.52725 2.62763 3.43105 4.00264 4.17840 4.37230 4.41390 4.57590 4.71094 4.80948 4.88513 4.92912 5.01124 5.17382 5.23956 5.35854 5.39855 5.60026 5.74372 5.83741 5.96452 5.97028 6.12222 6.37714 6.48804 6.71355 6.95965 6.96896 7.16621 7.72026 9.15843 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022297 B = 0.016023 C = 0.014512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.460217 B = 1747.047602 C = 1929.009043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.082 4.082 3 H 0.070 0.930 4 C 0.010 3.990 5 C -0.038 4.038 6 O -0.194 6.194 7 C -0.081 4.081 8 C -0.203 4.203 9 C -0.115 4.115 10 C 0.115 3.885 11 C -0.457 4.457 12 H 0.042 0.958 13 C 0.030 3.970 14 N -0.880 5.880 15 Si 0.920 3.080 16 H -0.275 1.275 17 H -0.290 1.290 18 H -0.300 1.300 19 C 0.088 3.912 20 N -0.841 5.841 21 H 0.043 0.957 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.219 0.781 27 H 0.130 0.870 28 H 0.236 0.764 29 H 0.006 0.994 30 H 0.058 0.942 31 H 0.335 0.665 32 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 6.017 0.066 6.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.101 4.101 3 H 0.089 0.911 4 C -0.027 4.027 5 C -0.088 4.088 6 O -0.092 6.092 7 C -0.147 4.147 8 C -0.223 4.223 9 C -0.117 4.117 10 C 0.114 3.886 11 C -0.495 4.495 12 H 0.061 0.939 13 C -0.169 4.169 14 N -0.519 5.519 15 Si 0.750 3.250 16 H -0.200 1.200 17 H -0.217 1.217 18 H -0.228 1.228 19 C -0.043 4.043 20 N -0.371 5.371 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.236 0.764 27 H 0.147 0.853 28 H 0.047 0.953 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.149 0.851 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.388 5.473 -0.381 5.983 hybrid contribution 0.267 -1.023 0.408 1.133 sum 2.655 4.450 0.027 5.182 Atomic orbital electron populations 1.21447 0.93818 1.01164 1.00046 1.22090 0.96657 0.96747 0.94627 0.91138 1.20460 0.88963 0.95845 0.97466 1.22711 0.89115 1.01251 0.95699 1.83595 1.29469 1.59813 1.36293 1.24017 0.99961 1.07067 0.83690 1.21068 0.96917 1.05798 0.98530 1.20851 0.95061 1.01216 0.94550 1.17615 0.89137 0.91478 0.90365 1.20697 1.15702 0.97903 1.15236 0.93936 1.25350 0.96637 0.98952 0.95985 1.70681 1.35298 1.20222 1.25744 0.86109 0.80949 0.80315 0.77663 1.19965 1.21692 1.22775 1.21701 0.96962 0.93842 0.91748 1.58529 1.41302 1.29399 1.07896 0.93740 0.93026 0.92899 0.92106 0.91857 0.76441 0.85250 0.95314 0.97583 0.92325 0.85143 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.05 8.33 71.98 0.60 -3.45 16 2 C -0.08 -3.29 3.13 -9.80 -0.03 -3.32 16 3 H 0.07 2.53 7.92 -2.39 -0.02 2.51 16 4 C 0.01 0.43 5.81 30.58 0.18 0.60 16 5 C -0.04 -1.82 6.29 25.02 0.16 -1.67 16 6 O -0.19 -8.96 10.66 -5.80 -0.06 -9.02 16 7 C -0.08 -3.29 12.08 66.95 0.81 -2.48 16 8 C -0.20 -8.89 10.03 22.21 0.22 -8.67 16 9 C -0.12 -5.41 3.46 -19.80 -0.07 -5.48 16 10 C 0.11 5.17 0.55 -53.01 -0.03 5.14 16 11 C -0.46 -23.18 5.62 25.60 0.14 -23.03 16 12 H 0.04 2.26 7.82 -2.91 -0.02 2.24 16 13 C 0.03 1.56 4.94 84.65 0.42 1.98 16 14 N -0.88 -47.99 8.10 21.45 0.17 -47.82 16 15 Si 0.92 44.08 29.54 68.60 2.03 46.11 16 16 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 18 H -0.30 -14.83 7.11 99.48 0.71 -14.13 16 19 C 0.09 3.49 5.69 86.30 0.49 3.98 16 20 N -0.84 -31.85 9.08 -186.72 -1.69 -33.54 16 21 H 0.04 1.92 6.64 -2.39 -0.02 1.90 16 22 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.06 2.99 7.23 -2.39 -0.02 2.97 16 26 H 0.22 6.63 8.06 -2.91 -0.02 6.60 16 27 H 0.13 5.18 6.89 -2.91 -0.02 5.16 16 28 H 0.24 13.14 8.31 -92.71 -0.77 12.37 16 29 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.33 12.88 6.43 -89.70 -0.58 12.30 16 32 H 0.33 10.27 9.08 -89.69 -0.81 9.45 16 Total: -1.00 -59.67 253.68 3.08 -56.59 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: -0.26 Total: 24.07 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 2.89 Total: -36.40 kcal Atomic # 7 Polarization: -79.84 SS G_CDS: -1.52 Total: -81.36 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.06 Total: -9.02 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -59.67 3.08 -56.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260939502.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.506 kcal (2) G-P(sol) polarization free energy of solvation -59.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds