Wall clock time and date at job start Mon Mar 30 2020 04:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64901 * 2 1 4 4 C 1.54358 * 110.73241 * 123.36428 * 2 1 3 5 5 C 1.51093 * 105.29871 * 144.97457 * 4 2 1 6 6 C 1.34425 * 143.78841 * 162.74593 * 5 4 2 7 7 O 1.34340 * 108.39534 * 180.27461 * 6 5 4 8 8 C 1.34343 * 109.46574 * 359.59956 * 7 6 5 9 9 C 1.34442 * 108.38970 * 0.40417 * 8 7 6 10 10 C 1.51081 * 143.78533 * 179.73555 * 9 8 7 11 11 C 1.50700 * 110.27589 * 316.29297 * 10 9 8 12 12 H 1.08001 * 120.00388 * 123.66037 * 11 10 9 13 13 C 1.37876 * 120.00027 * 303.66067 * 11 10 9 14 14 N 1.31514 * 120.00319 * 5.24272 * 13 11 10 15 15 Si 1.86801 * 119.99882 * 185.24762 * 13 11 10 16 16 H 1.48500 * 109.47171 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47603 * 120.00181 * 15 13 11 18 18 H 1.48503 * 109.46798 * 239.99802 * 15 13 11 19 19 C 1.52997 * 110.28216 * 78.28407 * 10 9 8 20 20 N 1.46901 * 109.47559 * 298.56276 * 19 10 9 21 21 H 1.09005 * 109.47145 * 183.17508 * 1 2 3 22 22 H 1.09004 * 109.47336 * 303.17422 * 1 2 3 23 23 H 1.08996 * 109.47374 * 63.17531 * 1 2 3 24 24 H 1.08997 * 110.27841 * 26.02239 * 4 2 1 25 25 H 1.08999 * 110.27793 * 263.92968 * 4 2 1 26 26 H 1.08004 * 125.80856 * 0.02562 * 6 5 4 27 27 H 1.07989 * 125.80667 * 180.13915 * 8 7 6 28 28 H 0.96994 * 120.00220 * 180.02562 * 14 13 11 29 29 H 1.09011 * 109.46743 * 58.55981 * 19 10 9 30 30 H 1.09005 * 109.47440 * 178.55715 * 19 10 9 31 31 H 1.00898 * 110.99973 * 56.04135 * 20 19 10 32 32 H 1.00900 * 110.99884 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0764 -0.7939 1.2057 5 6 3.3337 -1.4652 0.7042 6 6 4.4684 -2.0719 1.0934 7 8 5.1551 -2.4308 -0.0040 8 6 4.4684 -2.0683 -1.1003 9 6 3.3336 -1.4628 -0.7091 10 6 2.0764 -0.7899 -1.2083 11 6 2.4008 0.1465 -2.3435 12 1 1.9079 0.0300 -3.2974 13 6 3.3268 1.1522 -2.1645 14 7 4.0021 1.2315 -1.0388 15 14 3.6221 2.4022 -3.5209 16 1 2.7428 2.0948 -4.6774 17 1 3.3163 3.7642 -3.0142 18 1 5.0426 2.3410 -3.9496 19 6 1.0580 -1.8381 -1.6611 20 7 1.6210 -2.6214 -2.7689 21 1 -0.3634 -1.0261 0.0569 22 1 -0.3634 0.5623 0.8602 23 1 -0.3634 0.4637 -0.9170 24 1 1.3509 -1.5417 1.5257 25 1 2.3113 -0.1180 2.0280 26 1 4.7776 -2.2387 2.1147 27 1 4.7775 -2.2314 -2.1221 28 1 4.6533 1.9392 -0.9127 29 1 0.8250 -2.5018 -0.8283 30 1 0.1475 -1.3399 -1.9943 31 1 2.4998 -3.0412 -2.5050 32 1 0.9670 -3.3214 -3.0858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260968748.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:13 Heat of formation + Delta-G solvation = 22.034110 kcal Electronic energy + Delta-G solvation = -15994.208974 eV Core-core repulsion = 13535.529674 eV Total energy + Delta-G solvation = -2458.679300 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.50719 -37.61636 -33.06704 -32.19831 -30.97430 -28.69063 -26.87661 -25.93623 -24.07614 -22.08240 -19.72797 -18.96204 -18.28634 -16.55802 -15.39832 -14.75846 -14.68365 -14.44133 -13.90450 -13.68712 -12.94193 -12.60870 -12.31589 -12.06346 -11.95919 -11.42986 -10.96405 -10.78648 -10.63887 -10.46095 -9.98107 -9.93839 -9.77333 -9.40700 -8.67968 -8.32567 -7.96358 -7.66702 -7.17548 -5.82182 -3.90193 2.95465 3.35737 3.45042 3.49966 4.01984 4.28611 4.53817 5.32399 5.45385 5.62602 5.95225 5.99648 6.05493 6.20231 6.29448 6.42660 6.48658 6.54858 6.60812 6.72330 6.85420 6.90899 7.17741 7.37656 7.54589 7.59090 7.74134 7.92450 8.03500 8.14839 8.29535 8.38208 8.59647 9.13471 9.71997 11.18088 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.014778 C = 0.012877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.158567 B = 1894.197113 C = 2173.916935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 H 0.097 0.903 4 C -0.035 4.035 5 C -0.193 4.193 6 C -0.066 4.066 7 O -0.192 6.192 8 C -0.064 4.064 9 C -0.088 4.088 10 C 0.136 3.864 11 C -0.486 4.486 12 H 0.064 0.936 13 C 0.062 3.938 14 N -0.873 5.873 15 Si 0.883 3.117 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.289 1.289 19 C 0.086 3.914 20 N -0.836 5.836 21 H 0.042 0.958 22 H 0.036 0.964 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.180 0.820 27 H 0.184 0.816 28 H 0.254 0.746 29 H -0.002 1.002 30 H 0.063 0.937 31 H 0.335 0.665 32 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 -5.402 3.036 7.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.094 4.094 3 H 0.115 0.885 4 C -0.072 4.072 5 C -0.195 4.195 6 C -0.132 4.132 7 O -0.090 6.090 8 C -0.130 4.130 9 C -0.090 4.090 10 C 0.135 3.865 11 C -0.525 4.525 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.510 5.510 15 Si 0.712 3.288 16 H -0.198 1.198 17 H -0.214 1.214 18 H -0.215 1.215 19 C -0.044 4.044 20 N -0.364 5.364 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.197 0.803 27 H 0.201 0.799 28 H 0.064 0.936 29 H 0.016 0.984 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.923 -4.717 2.727 6.183 hybrid contribution 0.294 0.205 0.057 0.363 sum -2.629 -4.512 2.784 5.918 Atomic orbital electron populations 1.21844 0.97253 0.99956 1.00511 1.21936 0.92406 1.01834 0.93214 0.88475 1.20418 0.91776 0.96682 0.98346 1.21264 0.97668 1.02946 0.97581 1.22465 0.93556 1.07232 0.89989 1.84017 1.44883 1.66126 1.14005 1.22582 0.93333 1.07912 0.89167 1.21320 0.98036 0.96500 0.93156 1.17251 0.85953 0.90131 0.93198 1.20995 1.22678 1.11507 0.97286 0.91810 1.24966 0.95898 0.97811 0.95308 1.70056 1.24376 1.32216 1.24369 0.86673 0.77754 0.81586 0.82786 1.19845 1.21449 1.21508 1.21854 0.98097 0.94736 0.89741 1.58643 1.07451 1.29974 1.40330 0.93907 0.94471 0.92504 0.93033 0.93107 0.80274 0.79868 0.93591 0.98364 0.91815 0.85256 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.96 37.16 0.30 -2.26 16 2 C -0.07 -1.65 2.68 -89.20 -0.24 -1.89 16 3 H 0.10 2.48 6.40 -51.93 -0.33 2.15 16 4 C -0.03 -0.72 6.29 -26.98 -0.17 -0.89 16 5 C -0.19 -4.29 6.95 -104.60 -0.73 -5.02 16 6 C -0.07 -1.35 12.09 29.39 0.36 -0.99 16 7 O -0.19 -4.16 10.66 5.50 0.06 -4.11 16 8 C -0.06 -1.46 11.25 29.39 0.33 -1.12 16 9 C -0.09 -2.06 3.23 -104.60 -0.34 -2.40 16 10 C 0.14 3.15 0.37 -155.92 -0.06 3.09 16 11 C -0.49 -12.76 7.78 -34.44 -0.27 -13.03 16 12 H 0.06 1.74 7.76 -52.49 -0.41 1.33 16 13 C 0.06 1.67 4.89 -17.82 -0.09 1.58 16 14 N -0.87 -24.20 10.69 55.43 0.59 -23.61 16 15 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 C 0.09 1.75 4.45 -3.83 -0.02 1.73 16 20 N -0.84 -15.87 9.23 -10.36 -0.10 -15.96 16 21 H 0.04 0.72 6.58 -51.93 -0.34 0.38 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 1.06 7.84 -51.93 -0.41 0.66 16 24 H 0.05 0.95 7.84 -51.93 -0.41 0.55 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.18 2.92 8.06 -52.48 -0.42 2.50 16 27 H 0.18 3.83 8.06 -52.49 -0.42 3.41 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.00 -0.03 7.69 -51.92 -0.40 -0.43 16 30 H 0.06 1.28 6.88 -51.93 -0.36 0.92 16 31 H 0.33 6.34 7.33 -39.29 -0.29 6.05 16 32 H 0.32 5.01 9.08 -39.29 -0.36 4.65 16 LS Contribution 257.47 15.07 3.88 3.88 Total: -1.00 -28.92 257.47 -5.63 -34.55 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.12 Total: 10.11 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -0.92 Total: -21.19 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.50 Total: -39.57 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: 0.06 Total: -4.11 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.92 -5.63 -34.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260968748.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.580 kcal (2) G-P(sol) polarization free energy of solvation -28.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds