Wall clock time and date at job start Mon Mar 30 2020 04:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.86528 * 2 1 4 4 C 1.54475 * 110.95218 * 123.75870 * 2 1 3 5 5 C 1.51198 * 104.92378 * 143.67495 * 4 2 1 6 6 C 1.41505 * 142.39629 * 163.18475 * 5 4 2 7 7 C 1.34451 * 106.80548 * 180.26890 * 6 5 4 8 8 O 1.34191 * 108.42184 * 359.56853 * 7 6 5 9 9 C 1.34287 * 110.58156 * 343.17774 * 5 4 2 10 10 C 1.51442 * 110.25532 * 359.95837 * 9 5 4 11 11 C 1.50696 * 110.33848 * 135.77268 * 10 9 5 12 12 H 1.08002 * 119.99605 * 123.86848 * 11 10 9 13 13 C 1.37872 * 120.00396 * 303.87761 * 11 10 9 14 14 N 1.31521 * 119.99765 * 5.84888 * 13 11 10 15 15 Si 1.86796 * 120.00448 * 185.85400 * 13 11 10 16 16 H 1.48507 * 109.47076 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47190 * 119.99339 * 15 13 11 18 18 H 1.48495 * 109.47402 * 239.99790 * 15 13 11 19 19 C 1.53003 * 110.33845 * 258.02296 * 10 9 5 20 20 N 1.46904 * 109.46628 * 298.99557 * 19 10 9 21 21 H 1.09002 * 109.46814 * 183.75486 * 1 2 3 22 22 H 1.08999 * 109.47157 * 303.74908 * 1 2 3 23 23 H 1.08999 * 109.47366 * 63.75507 * 1 2 3 24 24 H 1.08998 * 110.34679 * 24.81548 * 4 2 1 25 25 H 1.09001 * 110.35204 * 262.53601 * 4 2 1 26 26 H 1.08006 * 126.59742 * 359.97438 * 6 5 4 27 27 H 1.07996 * 125.78428 * 179.74090 * 7 6 5 28 28 H 0.97002 * 119.99753 * 180.02562 * 14 13 11 29 29 H 1.08997 * 109.47227 * 58.99707 * 19 10 9 30 30 H 1.08995 * 109.47241 * 179.00009 * 19 10 9 31 31 H 1.00900 * 110.99957 * 56.04924 * 20 19 10 32 32 H 1.00900 * 110.99870 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0185 0.0000 4 6 2.0824 -0.8017 1.1994 5 6 3.3209 -1.4893 0.6708 6 6 4.5028 -2.1462 1.0879 7 6 5.1624 -2.5050 -0.0274 8 8 4.4436 -2.1118 -1.0902 9 6 3.3237 -1.4902 -0.6720 10 6 2.0823 -0.8015 -1.1993 11 6 2.4394 0.1281 -2.3304 12 1 1.9611 0.0168 -3.2923 13 6 3.3769 1.1204 -2.1374 14 7 4.0428 1.1847 -1.0051 15 14 3.7013 2.3737 -3.4840 16 1 2.8287 2.0842 -4.6503 17 1 3.4086 3.7367 -2.9726 18 1 5.1247 2.2961 -3.9001 19 6 1.0564 -1.8371 -1.6642 20 7 1.6314 -2.6424 -2.7501 21 1 -0.3633 -1.0255 0.0673 22 1 -0.3633 0.5709 0.8545 23 1 -0.3634 0.4544 -0.9217 24 1 1.3516 -1.5393 1.5310 25 1 2.3419 -0.1296 2.0173 26 1 4.8171 -2.3211 2.1063 27 1 6.1087 -3.0243 -0.0619 28 1 4.7022 1.8830 -0.8692 29 1 0.7928 -2.4873 -0.8301 30 1 0.1628 -1.3272 -2.0240 31 1 2.4964 -3.0741 -2.4612 32 1 0.9726 -3.3340 -3.0751 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260982752.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:41 Heat of formation + Delta-G solvation = 28.428428 kcal Electronic energy + Delta-G solvation = -16022.139509 eV Core-core repulsion = 13563.737487 eV Total energy + Delta-G solvation = -2458.402022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.44278 -37.54433 -33.24148 -32.33825 -31.06880 -28.91482 -27.57346 -24.93975 -24.02459 -22.16265 -20.04615 -18.75476 -18.35693 -16.69235 -15.52041 -14.77745 -14.75084 -14.32711 -13.87793 -13.72242 -12.99024 -12.40863 -12.12064 -11.96937 -11.80675 -11.45737 -11.19099 -10.96950 -10.69826 -10.55995 -10.11044 -9.95899 -9.92955 -9.43855 -8.78414 -8.45510 -8.35758 -7.76357 -6.94263 -5.89784 -4.02238 3.07162 3.33613 3.42187 3.47249 3.84737 4.08265 4.48163 5.25113 5.49238 5.59692 5.92069 5.99667 6.08222 6.09283 6.24523 6.31943 6.37339 6.52618 6.56430 6.69704 6.75010 6.86902 7.09583 7.13367 7.41003 7.57667 7.65181 7.76254 7.94982 8.05139 8.25267 8.36509 8.60688 9.02123 9.61228 11.07316 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022871 B = 0.014947 C = 0.012995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.986342 B = 1872.846362 C = 2154.077945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 H 0.101 0.899 4 C -0.033 4.033 5 C -0.252 4.252 6 C -0.187 4.187 7 C -0.091 4.091 8 O -0.163 6.163 9 C 0.083 3.917 10 C 0.153 3.847 11 C -0.494 4.494 12 H 0.070 0.930 13 C 0.062 3.938 14 N -0.871 5.871 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.287 1.287 19 C 0.083 3.917 20 N -0.836 5.836 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.123 0.877 27 H 0.183 0.817 28 H 0.258 0.742 29 H 0.004 0.996 30 H 0.072 0.928 31 H 0.337 0.663 32 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 -5.078 2.771 6.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.090 4.090 3 H 0.119 0.881 4 C -0.070 4.070 5 C -0.253 4.253 6 C -0.207 4.207 7 C -0.158 4.158 8 O -0.058 6.058 9 C 0.031 3.969 10 C 0.152 3.848 11 C -0.531 4.531 12 H 0.088 0.912 13 C -0.141 4.141 14 N -0.508 5.508 15 Si 0.720 3.280 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.213 1.213 19 C -0.048 4.048 20 N -0.364 5.364 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.141 0.859 27 H 0.200 0.800 28 H 0.068 0.932 29 H 0.022 0.978 30 H 0.090 0.910 31 H 0.150 0.850 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.217 -4.310 2.167 5.799 hybrid contribution 0.690 -0.032 0.426 0.811 sum -2.527 -4.342 2.592 5.654 Atomic orbital electron populations 1.21832 0.96563 1.00297 1.00879 1.21948 0.92803 1.01560 0.92673 0.88120 1.20382 0.92306 0.96437 0.97896 1.20843 0.99125 1.09149 0.96157 1.20870 0.96482 1.05204 0.98096 1.23458 0.99160 1.08579 0.84645 1.83820 1.28746 1.58494 1.34746 1.24016 0.87678 0.91767 0.93441 1.17717 0.83059 0.89924 0.94106 1.21017 1.22875 1.12327 0.96924 0.91201 1.25034 0.95586 0.97898 0.95588 1.70038 1.23898 1.32786 1.24086 0.86530 0.77967 0.81135 0.82387 1.19610 1.21214 1.21341 1.21909 0.97793 0.94615 0.90471 1.58590 1.08044 1.29312 1.40449 0.93647 0.93942 0.92302 0.93506 0.93248 0.85868 0.80045 0.93161 0.97786 0.91018 0.85005 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 7.99 37.16 0.30 -2.19 16 2 C -0.07 -1.56 2.74 -89.08 -0.24 -1.81 16 3 H 0.10 2.55 6.45 -51.93 -0.33 2.22 16 4 C -0.03 -0.70 6.34 -26.87 -0.17 -0.87 16 5 C -0.25 -5.92 6.96 -104.53 -0.73 -6.65 16 6 C -0.19 -4.01 10.91 -39.68 -0.43 -4.45 16 7 C -0.09 -1.92 12.08 29.39 0.36 -1.56 16 8 O -0.16 -4.01 10.32 4.79 0.05 -3.96 16 9 C 0.08 2.06 4.26 -35.34 -0.15 1.91 16 10 C 0.15 3.63 0.39 -155.68 -0.06 3.57 16 11 C -0.49 -13.15 7.81 -34.44 -0.27 -13.42 16 12 H 0.07 1.91 7.77 -52.49 -0.41 1.50 16 13 C 0.06 1.68 4.88 -17.82 -0.09 1.60 16 14 N -0.87 -24.51 10.70 55.43 0.59 -23.92 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 19 C 0.08 1.69 4.47 -3.82 -0.02 1.67 16 20 N -0.84 -16.33 9.26 -10.37 -0.10 -16.43 16 21 H 0.04 0.74 6.58 -51.93 -0.34 0.40 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 1.05 7.81 -51.93 -0.41 0.65 16 24 H 0.05 0.90 7.83 -51.93 -0.41 0.49 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.12 2.28 8.06 -52.48 -0.42 1.85 16 27 H 0.18 2.96 8.06 -52.49 -0.42 2.54 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.00 0.08 7.60 -51.93 -0.39 -0.32 16 30 H 0.07 1.41 6.96 -51.93 -0.36 1.04 16 31 H 0.34 6.84 7.69 -39.29 -0.30 6.54 16 32 H 0.32 5.11 9.08 -39.29 -0.36 4.75 16 LS Contribution 258.48 15.07 3.90 3.90 Total: -1.00 -29.77 258.48 -6.22 -35.99 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.14 Total: 10.16 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -1.51 Total: -22.20 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.50 Total: -40.35 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: 0.05 Total: -3.96 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.77 -6.22 -35.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260982752.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.420 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds