Wall clock time and date at job start Mon Mar 30 2020 04:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.86528 * 2 1 4 4 C 1.54475 * 110.95218 * 123.75870 * 2 1 3 5 5 C 1.51198 * 104.92378 * 143.67495 * 4 2 1 6 6 C 1.41505 * 142.39629 * 163.18475 * 5 4 2 7 7 C 1.34451 * 106.80548 * 180.26890 * 6 5 4 8 8 O 1.34191 * 108.42184 * 359.56853 * 7 6 5 9 9 C 1.34287 * 110.58156 * 343.17774 * 5 4 2 10 10 C 1.51442 * 110.25532 * 359.95837 * 9 5 4 11 11 C 1.50696 * 110.33848 * 135.77268 * 10 9 5 12 12 H 1.08002 * 119.99605 * 123.86848 * 11 10 9 13 13 C 1.37872 * 120.00396 * 303.87761 * 11 10 9 14 14 N 1.31521 * 119.99765 * 5.84888 * 13 11 10 15 15 Si 1.86796 * 120.00448 * 185.85400 * 13 11 10 16 16 H 1.48507 * 109.47076 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47190 * 119.99339 * 15 13 11 18 18 H 1.48495 * 109.47402 * 239.99790 * 15 13 11 19 19 C 1.53003 * 110.33845 * 258.02296 * 10 9 5 20 20 N 1.46904 * 109.46628 * 298.99557 * 19 10 9 21 21 H 1.09002 * 109.46814 * 183.75486 * 1 2 3 22 22 H 1.08999 * 109.47157 * 303.74908 * 1 2 3 23 23 H 1.08999 * 109.47366 * 63.75507 * 1 2 3 24 24 H 1.08998 * 110.34679 * 24.81548 * 4 2 1 25 25 H 1.09001 * 110.35204 * 262.53601 * 4 2 1 26 26 H 1.08006 * 126.59742 * 359.97438 * 6 5 4 27 27 H 1.07996 * 125.78428 * 179.74090 * 7 6 5 28 28 H 0.97002 * 119.99753 * 180.02562 * 14 13 11 29 29 H 1.08997 * 109.47227 * 58.99707 * 19 10 9 30 30 H 1.08995 * 109.47241 * 179.00009 * 19 10 9 31 31 H 1.00900 * 110.99957 * 56.04924 * 20 19 10 32 32 H 1.00900 * 110.99870 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9182 1.0185 0.0000 4 6 2.0824 -0.8017 1.1994 5 6 3.3209 -1.4893 0.6708 6 6 4.5028 -2.1462 1.0879 7 6 5.1624 -2.5050 -0.0274 8 8 4.4436 -2.1118 -1.0902 9 6 3.3237 -1.4902 -0.6720 10 6 2.0823 -0.8015 -1.1993 11 6 2.4394 0.1281 -2.3304 12 1 1.9611 0.0168 -3.2923 13 6 3.3769 1.1204 -2.1374 14 7 4.0428 1.1847 -1.0051 15 14 3.7013 2.3737 -3.4840 16 1 2.8287 2.0842 -4.6503 17 1 3.4086 3.7367 -2.9726 18 1 5.1247 2.2961 -3.9001 19 6 1.0564 -1.8371 -1.6642 20 7 1.6314 -2.6424 -2.7501 21 1 -0.3633 -1.0255 0.0673 22 1 -0.3633 0.5709 0.8545 23 1 -0.3634 0.4544 -0.9217 24 1 1.3516 -1.5393 1.5310 25 1 2.3419 -0.1296 2.0173 26 1 4.8171 -2.3211 2.1063 27 1 6.1087 -3.0243 -0.0619 28 1 4.7022 1.8830 -0.8692 29 1 0.7928 -2.4873 -0.8301 30 1 0.1628 -1.3272 -2.0240 31 1 2.4964 -3.0741 -2.4612 32 1 0.9726 -3.3340 -3.0751 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260982752.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:41 Heat of formation + Delta-G solvation = 8.758954 kcal Electronic energy + Delta-G solvation = -16022.992442 eV Core-core repulsion = 13563.737487 eV Total energy + Delta-G solvation = -2459.254954 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.16807 -39.25530 -34.87459 -34.30710 -32.74725 -30.53927 -29.36013 -26.67680 -25.79487 -23.85041 -21.72483 -20.43941 -20.15147 -18.57226 -17.19768 -16.64435 -16.36939 -16.19069 -15.61935 -15.36059 -14.63356 -14.07963 -13.88882 -13.55116 -13.43428 -13.02832 -12.93919 -12.79873 -12.52353 -12.39373 -11.85995 -11.69773 -11.64445 -11.22358 -10.61974 -10.38486 -10.13035 -9.30771 -8.70876 -7.90652 -6.10248 1.34911 1.42466 1.44440 1.54171 2.12695 2.40208 2.50672 3.25930 3.91063 4.04626 4.28979 4.39590 4.46045 4.53841 4.68637 4.71872 4.84762 4.92418 4.99136 5.10589 5.19573 5.25866 5.47695 5.52793 5.71817 5.80701 5.89435 5.94230 6.10857 6.37308 6.52513 6.83818 6.85788 6.96932 7.54755 9.00505 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022871 B = 0.014947 C = 0.012995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.986342 B = 1872.846362 C = 2154.077945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.071 4.071 3 H 0.062 0.938 4 C -0.030 4.030 5 C -0.268 4.268 6 C -0.202 4.202 7 C -0.088 4.088 8 O -0.190 6.190 9 C 0.054 3.946 10 C 0.142 3.858 11 C -0.499 4.499 12 H 0.055 0.945 13 C 0.019 3.981 14 N -0.893 5.893 15 Si 0.942 3.058 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.294 1.294 19 C 0.089 3.911 20 N -0.845 5.845 21 H 0.064 0.936 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.151 0.849 27 H 0.225 0.775 28 H 0.252 0.748 29 H 0.018 0.982 30 H 0.079 0.921 31 H 0.332 0.668 32 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.061 -5.889 3.225 7.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 H 0.080 0.920 4 C -0.067 4.067 5 C -0.269 4.269 6 C -0.221 4.221 7 C -0.154 4.154 8 O -0.086 6.086 9 C 0.002 3.998 10 C 0.141 3.859 11 C -0.537 4.537 12 H 0.074 0.926 13 C -0.181 4.181 14 N -0.531 5.531 15 Si 0.769 3.231 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.221 1.221 19 C -0.042 4.042 20 N -0.375 5.375 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.169 0.831 27 H 0.241 0.759 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.097 0.903 31 H 0.145 0.855 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.826 -5.129 2.612 6.911 hybrid contribution 0.913 0.168 0.275 0.968 sum -2.914 -4.961 2.888 6.437 Atomic orbital electron populations 1.21764 0.93427 1.01907 1.01670 1.21846 0.95377 0.99242 0.92588 0.91996 1.20402 0.92226 0.96706 0.97350 1.21350 1.00263 1.09097 0.96220 1.21276 0.95979 1.05122 0.99720 1.24358 0.99869 1.07432 0.83749 1.83784 1.29309 1.59090 1.36444 1.24109 0.88292 0.93252 0.94140 1.17879 0.83904 0.90367 0.93742 1.21224 1.22291 1.12880 0.97273 0.92644 1.25595 0.95866 0.99463 0.97140 1.70167 1.24441 1.33117 1.25358 0.85751 0.77180 0.79621 0.80522 1.19311 1.20731 1.22076 1.21805 0.96976 0.94250 0.91132 1.58523 1.08508 1.30178 1.40327 0.91713 0.91918 0.92646 0.90976 0.93424 0.83107 0.75867 0.93883 0.96425 0.90320 0.85550 0.84570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 7.99 71.98 0.58 -3.84 16 2 C -0.07 -3.10 2.74 -9.80 -0.03 -3.12 16 3 H 0.06 3.18 6.45 -2.39 -0.02 3.16 16 4 C -0.03 -1.23 6.34 30.51 0.19 -1.03 16 5 C -0.27 -12.33 6.96 -19.80 -0.14 -12.47 16 6 C -0.20 -8.29 10.91 22.21 0.24 -8.05 16 7 C -0.09 -3.54 12.08 66.95 0.81 -2.73 16 8 O -0.19 -9.25 10.32 -5.76 -0.06 -9.31 16 9 C 0.05 2.63 4.26 25.02 0.11 2.74 16 10 C 0.14 6.67 0.39 -52.94 -0.02 6.64 16 11 C -0.50 -26.70 7.81 25.60 0.20 -26.50 16 12 H 0.06 3.05 7.77 -2.91 -0.02 3.03 16 13 C 0.02 1.07 4.88 84.65 0.41 1.48 16 14 N -0.89 -50.99 10.70 21.45 0.23 -50.76 16 15 Si 0.94 44.63 29.54 68.60 2.03 46.65 16 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 19 C 0.09 3.49 4.47 86.30 0.39 3.88 16 20 N -0.85 -32.05 9.26 -186.71 -1.73 -33.78 16 21 H 0.06 1.93 6.58 -2.39 -0.02 1.91 16 22 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 23 H 0.05 1.89 7.81 -2.39 -0.02 1.87 16 24 H 0.07 2.58 7.83 -2.39 -0.02 2.56 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.15 5.18 8.06 -2.91 -0.02 5.15 16 27 H 0.23 6.61 8.06 -2.91 -0.02 6.58 16 28 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.02 0.65 7.60 -2.39 -0.02 0.63 16 30 H 0.08 2.94 6.96 -2.39 -0.02 2.92 16 31 H 0.33 13.26 7.69 -89.69 -0.69 12.57 16 32 H 0.34 10.27 9.08 -89.69 -0.81 9.45 16 Total: -1.00 -63.58 258.48 2.84 -60.74 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: -0.37 Total: 29.47 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 2.74 Total: -43.01 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -1.50 Total: -84.54 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.06 Total: -9.31 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -63.58 2.84 -60.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260982752.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.498 kcal (2) G-P(sol) polarization free energy of solvation -63.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds