Wall clock time and date at job start Mon Mar 30 2020 02:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35454 * 126.77498 * 2 1 4 4 C 1.41383 * 103.98280 * 180.09390 * 3 2 1 5 5 C 1.50704 * 126.80208 * 179.88533 * 4 3 2 6 6 H 1.08998 * 109.46786 * 154.70979 * 5 4 3 7 7 C 1.50698 * 109.46554 * 34.71488 * 5 4 3 8 8 H 1.07994 * 120.00102 * 274.78850 * 7 5 4 9 9 C 1.37881 * 120.00176 * 95.07036 * 7 5 4 10 10 N 1.31521 * 119.99731 * 354.58324 * 9 7 5 11 11 Si 1.86792 * 120.00462 * 174.58324 * 9 7 5 12 12 H 1.48507 * 109.47093 * 60.00030 * 11 9 7 13 13 H 1.48505 * 109.47439 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47098 * 299.99985 * 11 9 7 15 15 C 1.52995 * 109.47344 * 274.71726 * 5 4 3 16 16 C 1.53780 * 113.61413 * 282.77377 * 15 5 4 17 17 C 1.53779 * 87.08166 * 220.01957 * 16 15 5 18 18 C 1.53775 * 87.08247 * 25.43219 * 17 16 15 19 19 N 1.30176 * 106.39682 * 359.63018 * 4 3 2 20 20 O 1.20922 * 111.60115 * 0.23614 * 19 4 3 21 21 H 1.09003 * 109.47160 * 180.29738 * 1 2 3 22 22 H 1.08994 * 109.47267 * 300.30297 * 1 2 3 23 23 H 1.09004 * 109.47010 * 60.30269 * 1 2 3 24 24 H 1.07994 * 128.00846 * 359.96159 * 3 2 1 25 25 H 0.97001 * 120.00004 * 180.02562 * 10 9 7 26 26 H 1.09001 * 112.85351 * 54.07787 * 15 5 4 27 27 H 1.09009 * 113.61192 * 334.57162 * 16 15 5 28 28 H 1.09004 * 113.61786 * 105.46556 * 16 15 5 29 29 H 1.09000 * 113.61284 * 270.88073 * 17 16 15 30 30 H 1.09006 * 113.68777 * 139.99058 * 17 16 15 31 31 H 1.08995 * 113.61894 * 220.02286 * 18 17 16 32 32 H 1.09004 * 113.61631 * 89.11271 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 -0.0022 5 6 4.9211 1.3000 -0.0056 6 1 5.7056 0.6829 0.4323 7 6 4.7648 2.5622 0.8028 8 1 4.3643 3.4527 0.3415 9 6 5.1385 2.5817 2.1298 10 7 5.5309 1.4731 2.7188 11 14 5.0876 4.1824 3.0912 12 1 3.6993 4.7095 3.1017 13 1 5.5338 3.9366 4.4861 14 1 5.9886 5.1736 2.4502 15 6 5.2980 1.6592 -1.4443 16 6 5.8847 0.4812 -2.2398 17 6 6.8821 1.4859 -2.8404 18 6 6.6764 2.3292 -1.5711 19 7 3.4764 -0.7564 0.0047 20 8 2.3095 -1.0735 0.0061 21 1 -0.3633 -1.0277 0.0053 22 1 -0.3633 0.5185 0.8872 23 1 -0.3633 0.5091 -0.8927 24 1 2.0345 2.1270 -0.0006 25 1 5.7935 1.4867 3.6525 26 1 4.5043 2.1904 -1.9697 27 1 6.3533 -0.2782 -1.6137 28 1 5.1942 0.0611 -2.9711 29 1 6.5218 1.9688 -3.7487 30 1 7.8930 1.0911 -2.9432 31 1 6.6249 3.4010 -1.7625 32 1 7.3614 2.0750 -0.7622 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261043584.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:22 Heat of formation + Delta-G solvation = 44.967966 kcal Electronic energy + Delta-G solvation = -15183.763975 eV Core-core repulsion = 12726.079161 eV Total energy + Delta-G solvation = -2457.684814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.50519 -39.74054 -35.83136 -34.34693 -33.81532 -30.66527 -28.35648 -26.72870 -26.06748 -24.46180 -23.07572 -20.52816 -20.10098 -18.54449 -18.27004 -17.70052 -16.65067 -16.26402 -15.36389 -15.14412 -14.54693 -14.27181 -13.86146 -13.74341 -13.34931 -13.23308 -12.98331 -12.86583 -12.74870 -12.41923 -11.98870 -11.80953 -11.47627 -11.33585 -11.08545 -10.82492 -10.58510 -10.19673 -9.91409 -8.16214 -6.28642 0.86751 1.41065 1.42667 1.50426 1.77858 2.40813 2.61321 3.12720 3.81283 3.91984 3.99602 4.00804 4.08132 4.28085 4.53734 4.68341 4.80342 4.81727 4.87259 4.89764 4.99689 5.05477 5.07521 5.20800 5.24140 5.36102 5.41750 5.55881 5.63323 5.73904 5.90648 6.27295 6.87162 7.40698 7.79878 8.92983 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.017596 B = 0.013501 C = 0.008718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.901076 B = 2073.488072 C = 3211.009205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.054 4.054 3 C -0.238 4.238 4 C 0.056 3.944 5 C 0.114 3.886 6 H 0.023 0.977 7 C -0.505 4.505 8 H 0.065 0.935 9 C 0.013 3.987 10 N -0.928 5.928 11 Si 0.956 3.044 12 H -0.266 1.266 13 H -0.292 1.292 14 H -0.264 1.264 15 C -0.093 4.093 16 C -0.138 4.138 17 C -0.124 4.124 18 C -0.117 4.117 19 N -0.427 5.427 20 O 0.067 5.933 21 H 0.093 0.907 22 H 0.097 0.903 23 H 0.108 0.892 24 H 0.169 0.831 25 H 0.260 0.740 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 1.329 -7.942 10.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.118 4.118 3 C -0.259 4.259 4 C -0.102 4.102 5 C 0.094 3.906 6 H 0.041 0.959 7 C -0.544 4.544 8 H 0.083 0.917 9 C -0.186 4.186 10 N -0.567 5.567 11 Si 0.781 3.219 12 H -0.190 1.190 13 H -0.218 1.218 14 H -0.189 1.189 15 C -0.113 4.113 16 C -0.176 4.176 17 C -0.161 4.161 18 C -0.155 4.155 19 N -0.138 5.138 20 O 0.008 5.992 21 H 0.112 0.888 22 H 0.115 0.885 23 H 0.126 0.874 24 H 0.186 0.814 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.927 0.201 -7.767 9.772 hybrid contribution -0.042 1.218 1.155 1.679 sum -5.970 1.419 -6.612 9.020 Atomic orbital electron populations 1.20447 0.80625 1.05512 1.05175 1.25266 0.97989 0.85677 1.02892 1.22491 0.91595 1.01265 1.10545 1.24815 1.00195 0.88647 0.96523 1.17330 0.87116 0.93169 0.92955 0.95858 1.21113 1.42033 0.96250 0.94992 0.91709 1.25854 0.94564 0.99181 0.98968 1.70139 1.45801 1.28677 1.12072 0.85630 0.79097 0.79959 0.77170 1.19045 1.21771 1.18866 1.22493 0.97009 0.96968 0.94785 1.22885 0.99083 0.96657 0.98928 1.22795 0.99140 0.96835 0.97336 1.22647 0.96393 0.99258 0.97199 1.73739 0.97211 1.18338 1.24499 1.84665 1.11549 1.34063 1.68947 0.88773 0.88479 0.87390 0.81356 0.93125 0.90346 0.92748 0.92211 0.88487 0.90846 0.91239 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.29 10.45 71.24 0.74 -0.55 16 2 C -0.05 -1.95 7.49 25.04 0.19 -1.77 16 3 C -0.24 -10.06 10.37 22.40 0.23 -9.83 16 4 C 0.06 2.81 6.13 43.58 0.27 3.08 16 5 C 0.11 5.89 2.01 -12.29 -0.02 5.87 16 6 H 0.02 1.41 7.30 -2.39 -0.02 1.39 16 7 C -0.51 -27.04 7.39 25.60 0.19 -26.85 16 8 H 0.06 3.31 7.82 -2.91 -0.02 3.28 16 9 C 0.01 0.73 5.45 84.65 0.46 1.20 16 10 N -0.93 -56.16 12.84 21.45 0.28 -55.89 16 11 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 14 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 15 C -0.09 -3.94 3.07 -10.27 -0.03 -3.97 16 16 C -0.14 -5.22 7.55 31.12 0.24 -4.98 16 17 C -0.12 -3.84 8.08 31.12 0.25 -3.59 16 18 C -0.12 -4.47 7.26 31.12 0.23 -4.24 16 19 N -0.43 -21.37 12.07 -49.56 -0.60 -21.97 16 20 O 0.07 2.89 11.20 71.68 0.80 3.70 16 21 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.17 6.56 8.06 -2.91 -0.02 6.53 16 25 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 26 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 27 H 0.05 2.28 8.04 -2.38 -0.02 2.26 16 28 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.07 2.05 8.14 -2.38 -0.02 2.04 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.06 2.38 8.10 -2.38 -0.02 2.36 16 Total: -1.00 -67.38 274.98 6.34 -61.04 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.09 Total: 13.56 kcal Atomic # 6 Polarization: -48.38 SS G_CDS: 2.74 Total: -45.64 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -0.32 Total: -77.85 kcal Atomic # 8 Polarization: 2.89 SS G_CDS: 0.80 Total: 3.70 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -67.38 6.34 -61.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261043584.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.011 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds