Wall clock time and date at job start Mon Mar 30 2020 02:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47257 * 2 1 4 4 N 1.30695 * 127.01958 * 269.68693 * 3 2 1 5 5 O 1.21460 * 111.68863 * 179.82731 * 4 3 2 6 6 C 1.33162 * 111.27748 * 0.36928 * 5 4 3 7 7 C 1.35520 * 106.45234 * 359.85495 * 6 5 4 8 8 C 1.50084 * 124.85948 * 179.78337 * 7 6 5 9 9 H 1.08999 * 109.71322 * 103.61092 * 8 7 6 10 10 C 1.50698 * 109.70955 * 224.20276 * 8 7 6 11 11 H 1.08000 * 120.00515 * 5.46634 * 10 8 7 12 12 C 1.37877 * 119.99898 * 185.47342 * 10 8 7 13 13 N 1.31516 * 120.00042 * 7.49315 * 12 10 8 14 14 Si 1.86805 * 120.00033 * 187.49658 * 12 10 8 15 15 H 1.48497 * 109.47231 * 94.98633 * 14 12 10 16 16 H 1.48502 * 109.46993 * 214.99218 * 14 12 10 17 17 H 1.48503 * 109.46918 * 334.98367 * 14 12 10 18 18 C 1.53542 * 108.23515 * 343.88632 * 8 7 6 19 19 C 1.53111 * 109.53111 * 49.24481 * 18 8 7 20 20 C 1.50564 * 129.73749 * 179.89761 * 6 5 4 21 21 H 1.09005 * 109.47344 * 60.00285 * 1 2 3 22 22 H 1.09001 * 109.47125 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47509 * 299.99830 * 1 2 3 24 24 H 1.09001 * 109.47452 * 240.00483 * 2 1 3 25 25 H 1.09000 * 109.47389 * 120.00445 * 2 1 3 26 26 H 0.97002 * 119.99982 * 180.02562 * 13 12 10 27 27 H 1.09000 * 109.46522 * 169.26672 * 18 8 7 28 28 H 1.09009 * 109.45974 * 289.24575 * 18 8 7 29 29 H 1.09002 * 109.42445 * 50.19661 * 19 18 8 30 30 H 1.09000 * 109.43112 * 170.08862 * 19 18 8 31 31 H 1.08999 * 109.69066 * 43.58861 * 20 6 5 32 32 H 1.08996 * 109.69801 * 282.98613 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3000 2.1608 -1.0435 5 8 2.6856 3.2669 -0.7224 6 6 2.7298 3.3976 0.6021 7 6 2.3133 2.2159 1.1185 8 6 2.2084 1.9095 2.5840 9 1 1.1638 1.9445 2.8931 10 6 2.7741 0.5401 2.8587 11 1 3.2517 -0.0161 2.0655 12 6 2.6820 -0.0031 4.1226 13 7 1.9744 0.6049 5.0496 14 14 3.5622 -1.6025 4.5184 15 1 4.8826 -1.3030 5.1283 16 1 2.7446 -2.3946 5.4720 17 1 3.7590 -2.3813 3.2694 18 6 3.0129 2.9662 3.3545 19 6 2.6218 4.3638 2.8664 20 6 3.1432 4.5787 1.4394 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.9099 0.2230 5.9389 27 1 2.7986 2.8804 4.4198 28 1 4.0778 2.8072 3.1843 29 1 1.5360 4.4597 2.8741 30 1 3.0567 5.1136 3.5273 31 1 2.7140 5.4909 1.0250 32 1 4.2302 4.6567 1.4533 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261085765.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:04 Heat of formation + Delta-G solvation = 32.180111 kcal Electronic energy + Delta-G solvation = -15530.066906 eV Core-core repulsion = 13071.827569 eV Total energy + Delta-G solvation = -2458.239337 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.06913 -36.97950 -34.63735 -32.82272 -30.71591 -29.79708 -29.30144 -25.18814 -23.92587 -22.48270 -21.70929 -19.79993 -18.29844 -17.01599 -16.50765 -15.82157 -14.65790 -14.31620 -13.63242 -13.58279 -13.04077 -12.76381 -12.58332 -12.33417 -11.91213 -11.50429 -11.29931 -10.94410 -10.92701 -10.71487 -10.49784 -10.32507 -10.09606 -9.84222 -9.49265 -9.17169 -8.83285 -8.54098 -7.97766 -6.11207 -4.13008 2.26935 3.19006 3.25573 3.33695 3.37085 3.84734 4.37560 4.98616 5.19470 5.29494 5.57963 5.64510 5.67688 5.88024 5.92519 6.00895 6.11296 6.21193 6.35420 6.35473 6.41106 6.49256 6.68407 6.75857 6.81026 6.97523 7.11952 7.27898 7.58088 7.76344 7.87957 8.30051 8.87647 9.07684 9.50054 10.97666 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024648 B = 0.012479 C = 0.009365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.743842 B = 2243.222726 C = 2989.102507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C 0.038 3.962 4 N -0.396 5.396 5 O 0.083 5.917 6 C -0.079 4.079 7 C -0.144 4.144 8 C 0.113 3.887 9 H 0.050 0.950 10 C -0.509 4.509 11 H 0.060 0.940 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.887 3.113 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.107 4.107 19 C -0.120 4.120 20 C -0.024 4.024 21 H 0.044 0.956 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.262 0.738 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 4.088 -4.338 5.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C -0.119 4.119 4 N -0.105 5.105 5 O 0.021 5.979 6 C -0.143 4.143 7 C -0.148 4.148 8 C 0.094 3.906 9 H 0.068 0.932 10 C -0.547 4.547 11 H 0.078 0.922 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.715 3.285 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.145 4.145 19 C -0.157 4.157 20 C -0.062 4.062 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.129 0.871 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.151 3.879 -5.468 6.706 hybrid contribution 0.520 -0.923 1.026 1.475 sum 0.369 2.957 -4.442 5.348 Atomic orbital electron populations 1.21623 0.94891 1.01389 1.01699 1.20085 0.95797 0.88854 1.04066 1.23041 1.01273 0.98789 0.88819 1.74089 1.19098 0.92915 1.24364 1.84558 1.63703 1.26919 1.22762 1.24062 1.06960 0.99956 0.83322 1.21517 1.01738 0.91468 1.00035 1.17271 0.97124 0.94453 0.81756 0.93232 1.20995 1.37763 1.00592 0.95359 0.92206 1.24922 0.94856 0.97219 0.96477 1.69939 1.38807 1.39900 1.03806 0.86653 0.79844 0.83628 0.78415 1.20675 1.21209 1.19771 1.21726 0.99498 0.91224 1.02039 1.21739 1.00875 0.99928 0.93207 1.20071 1.00963 0.91865 0.93285 0.93700 0.92426 0.91942 0.91948 0.87056 0.92851 0.90329 0.93538 0.92151 0.91977 0.90803 0.90199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.89 37.16 0.37 -1.99 16 2 C -0.05 -0.97 6.33 -27.89 -0.18 -1.15 16 3 C 0.04 0.81 6.39 -82.39 -0.53 0.29 16 4 N -0.40 -8.48 12.10 33.47 0.41 -8.08 16 5 O 0.08 1.70 11.20 19.25 0.22 1.91 16 6 C -0.08 -1.57 7.39 -35.34 -0.26 -1.84 16 7 C -0.14 -3.20 5.46 -105.20 -0.57 -3.77 16 8 C 0.11 2.69 2.32 -92.94 -0.22 2.47 16 9 H 0.05 1.30 8.10 -51.93 -0.42 0.88 16 10 C -0.51 -13.12 7.07 -34.44 -0.24 -13.36 16 11 H 0.06 1.56 6.30 -52.49 -0.33 1.23 16 12 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 13 N -0.89 -23.97 12.29 55.43 0.68 -23.28 16 14 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C -0.11 -2.31 4.97 -26.39 -0.13 -2.44 16 19 C -0.12 -2.05 5.88 -26.45 -0.16 -2.21 16 20 C -0.02 -0.38 6.31 -27.72 -0.17 -0.55 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.11 2.33 5.43 -51.93 -0.28 2.05 16 26 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.08 1.85 7.23 -51.93 -0.38 1.47 16 28 H 0.05 1.02 8.08 -51.92 -0.42 0.60 16 29 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 262.33 15.07 3.95 3.95 Total: -1.00 -27.53 262.33 -6.30 -33.83 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.34 Total: -0.82 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -2.19 Total: -22.88 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 1.09 Total: -31.36 kcal Atomic # 8 Polarization: 1.70 SS G_CDS: 0.22 Total: 1.91 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.53 -6.30 -33.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085765.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.009 kcal (2) G-P(sol) polarization free energy of solvation -27.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds