Wall clock time and date at job start Mon Mar 30 2020 02:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34474 * 126.16551 * 2 1 4 4 C 1.30257 * 108.70370 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.62235 * 179.73380 * 4 3 2 6 6 H 1.08998 * 109.46929 * 359.97438 * 5 4 3 7 7 C 1.50700 * 109.47028 * 239.99783 * 5 4 3 8 8 H 1.08003 * 120.00095 * 275.46639 * 7 5 4 9 9 C 1.37876 * 119.99880 * 95.47043 * 7 5 4 10 10 N 1.31518 * 119.99864 * 5.77912 * 9 7 5 11 11 Si 1.86796 * 120.00054 * 185.77995 * 9 7 5 12 12 H 1.48500 * 109.47159 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47250 * 120.00092 * 11 9 7 14 14 H 1.48504 * 109.47226 * 240.00155 * 11 9 7 15 15 C 1.53001 * 109.47027 * 119.99878 * 5 4 3 16 16 C 1.53000 * 117.49977 * 254.10980 * 15 5 4 17 17 C 1.52999 * 60.00090 * 252.51125 * 16 15 5 18 18 O 1.33968 * 108.75745 * 0.02562 * 4 3 2 19 19 C 1.34328 * 126.16726 * 179.97438 * 2 1 3 20 20 C 1.50707 * 126.44286 * 0.02562 * 19 2 1 21 21 H 1.08997 * 109.47721 * 90.02386 * 1 2 3 22 22 H 1.09003 * 109.47001 * 210.02556 * 1 2 3 23 23 H 1.09004 * 109.47042 * 330.02302 * 1 2 3 24 24 H 0.97005 * 119.99850 * 179.97438 * 10 9 7 25 25 H 1.09001 * 115.55078 * 39.81827 * 15 5 4 26 26 H 1.09003 * 117.49391 * 359.97438 * 16 15 5 27 27 H 1.08988 * 117.50357 * 145.01989 * 16 15 5 28 28 H 1.09003 * 117.50141 * 252.51265 * 17 16 15 29 29 H 1.09003 * 117.51955 * 107.47742 * 17 16 15 30 30 H 1.08994 * 109.46834 * 90.00203 * 20 19 2 31 31 H 1.08994 * 109.47062 * 210.00660 * 20 19 2 32 32 H 1.08999 * 109.46732 * 330.00652 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3005 1.0856 0.0000 4 6 3.5431 0.6948 0.0006 5 6 4.7479 1.5999 -0.0049 6 1 4.4211 2.6397 -0.0099 7 6 5.5750 1.3278 -1.2350 8 1 6.2979 0.5254 -1.2330 9 6 5.4089 2.1033 -2.3628 10 7 4.6131 3.1499 -2.3298 11 14 6.3141 1.6675 -3.9376 12 1 7.1410 0.4545 -3.7138 13 1 5.3297 1.4038 -5.0177 14 1 7.1919 2.7982 -4.3331 15 6 5.5902 1.3355 1.2447 16 6 5.5436 2.3796 2.3621 17 6 6.7943 2.2467 1.4910 18 8 3.5734 -0.6446 0.0003 19 6 2.2997 -1.0844 0.0005 20 6 1.8493 -2.5226 0.0006 21 1 -0.3634 -0.0004 -1.0276 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5135 24 1 4.4965 3.6957 -3.1232 25 1 5.6827 0.2893 1.5366 26 1 4.9131 3.2552 2.2066 27 1 5.6052 2.0206 3.3893 28 1 7.6789 1.8001 1.9451 29 1 6.9867 3.0344 0.7624 30 1 1.7411 -2.8695 -1.0270 31 1 2.5897 -3.1352 0.5149 32 1 0.8912 -2.6032 0.5140 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261105610.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:37 Heat of formation + Delta-G solvation = 6.370266 kcal Electronic energy + Delta-G solvation = -15055.150335 eV Core-core repulsion = 12595.791800 eV Total energy + Delta-G solvation = -2459.358536 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.97509 -38.49819 -35.86337 -35.08309 -33.76526 -30.90925 -29.86043 -26.69755 -25.03674 -23.08246 -22.56145 -21.91954 -20.68487 -18.58025 -17.44860 -17.36904 -16.66785 -16.24130 -15.17371 -14.84765 -14.77084 -14.12239 -14.09705 -13.80298 -13.62622 -13.29641 -13.01568 -12.90411 -12.82709 -12.51996 -12.26512 -11.97488 -11.62353 -11.37040 -11.14542 -11.10384 -10.79871 -10.55093 -9.15423 -8.25961 -6.40401 0.77946 1.35204 1.37179 1.49974 1.97465 2.14049 2.34879 2.99688 3.17256 3.54188 4.03485 4.05614 4.17413 4.25127 4.35317 4.49030 4.65512 4.71051 4.79309 4.81638 4.85697 4.93917 5.00347 5.15070 5.24152 5.38953 5.43037 5.46592 5.57367 5.66434 5.70859 6.07246 6.73656 7.19983 7.29142 8.80810 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020805 B = 0.011282 C = 0.008841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.507772 B = 2481.131013 C = 3166.408392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.050 4.050 3 N -0.544 5.544 4 C 0.233 3.767 5 C 0.148 3.852 6 H 0.065 0.935 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.020 3.980 10 N -0.909 5.909 11 Si 0.959 3.041 12 H -0.261 1.261 13 H -0.285 1.285 14 H -0.270 1.270 15 C -0.152 4.152 16 C -0.179 4.179 17 C -0.151 4.151 18 O -0.219 6.219 19 C -0.101 4.101 20 C -0.052 4.052 21 H 0.074 0.926 22 H 0.105 0.895 23 H 0.065 0.935 24 H 0.266 0.734 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 -8.353 5.557 10.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.169 4.169 3 N -0.273 5.273 4 C 0.027 3.973 5 C 0.128 3.872 6 H 0.083 0.917 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.181 4.181 10 N -0.546 5.546 11 Si 0.783 3.217 12 H -0.185 1.185 13 H -0.211 1.211 14 H -0.195 1.195 15 C -0.171 4.171 16 C -0.215 4.215 17 C -0.188 4.188 18 O -0.107 6.107 19 C -0.154 4.154 20 C -0.108 4.108 21 H 0.093 0.907 22 H 0.123 0.877 23 H 0.084 0.916 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.667 -7.595 5.456 10.045 hybrid contribution 0.519 -0.368 -1.149 1.314 sum -3.148 -7.963 4.306 9.585 Atomic orbital electron populations 1.20141 0.84329 1.03998 1.03031 1.22295 0.99634 0.88007 1.06917 1.70413 1.01816 1.32633 1.22477 1.27954 0.96132 0.78790 0.94453 1.17153 0.84664 0.91833 0.93520 0.91703 1.21143 1.20961 1.16808 0.97200 0.92065 1.25889 0.95737 0.94193 1.02317 1.70078 1.38080 1.16200 1.30248 0.85488 0.78438 0.78980 0.78769 1.18486 1.21069 1.19497 1.22196 1.02590 0.95887 0.96445 1.23065 1.01634 1.00706 0.96136 1.22760 0.92098 1.02107 1.01820 1.84358 1.31025 1.24879 1.70472 1.24026 0.80789 1.00079 1.10463 1.20346 1.02709 0.83493 1.04291 0.90716 0.87657 0.91610 0.92452 0.89058 0.90318 0.86968 0.86927 0.90301 0.89405 0.90007 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.22 71.24 0.73 -0.98 16 2 C -0.05 -2.08 7.11 41.26 0.29 -1.79 16 3 N -0.54 -28.40 11.29 -291.99 -3.30 -31.69 16 4 C 0.23 12.31 6.83 88.34 0.60 12.91 16 5 C 0.15 7.86 2.52 -12.29 -0.03 7.83 16 6 H 0.06 3.88 7.03 -2.39 -0.02 3.86 16 7 C -0.52 -29.26 8.07 25.60 0.21 -29.06 16 8 H 0.06 3.38 7.82 -2.91 -0.02 3.35 16 9 C 0.02 1.13 5.45 84.65 0.46 1.59 16 10 N -0.91 -54.31 12.76 21.45 0.27 -54.04 16 11 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 13 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 14 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 15 C -0.15 -6.63 5.04 -10.79 -0.05 -6.69 16 16 C -0.18 -6.55 10.18 30.59 0.31 -6.24 16 17 C -0.15 -5.69 10.01 30.59 0.31 -5.38 16 18 O -0.22 -10.59 10.78 -3.69 -0.04 -10.63 16 19 C -0.10 -3.98 7.39 24.79 0.18 -3.80 16 20 C -0.05 -1.27 10.22 71.24 0.73 -0.54 16 21 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.10 2.17 7.17 -2.39 -0.02 2.15 16 23 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 24 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 25 H 0.09 3.84 8.14 -2.39 -0.02 3.83 16 26 H 0.08 3.06 8.08 -2.39 -0.02 3.04 16 27 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 28 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 29 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.11 1.99 7.17 -2.39 -0.02 1.98 16 Total: -1.00 -70.31 279.43 3.80 -66.51 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.10 Total: 15.84 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 3.74 Total: -32.12 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -3.02 Total: -85.73 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.04 Total: -10.63 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -70.31 3.80 -66.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261105610.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.879 kcal (2) G-P(sol) polarization free energy of solvation -70.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds