Wall clock time and date at job start Mon Mar 30 2020 02:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34335 * 126.16214 * 2 1 4 4 O 1.34750 * 107.11031 * 180.02562 * 3 2 1 5 5 C 1.33970 * 107.75612 * 359.97438 * 4 3 2 6 6 C 1.50698 * 125.61643 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.46665 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.47294 * 300.02357 * 6 5 4 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 6 5 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 6 5 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47288 * 59.99994 * 12 10 8 14 14 H 1.48503 * 109.47086 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46819 * 299.99648 * 12 10 8 16 16 C 1.52997 * 109.47342 * 60.02574 * 6 5 4 17 17 C 1.53781 * 113.61324 * 159.13549 * 16 6 5 18 18 C 1.53955 * 87.01973 * 220.05205 * 17 16 6 19 19 C 1.53780 * 87.11265 * 25.36281 * 18 17 16 20 20 N 1.30249 * 108.76167 * 0.26970 * 5 4 3 21 21 H 1.09004 * 109.46991 * 90.02118 * 1 2 3 22 22 H 1.09000 * 109.47132 * 210.02240 * 1 2 3 23 23 H 1.09001 * 109.47447 * 330.02733 * 1 2 3 24 24 H 1.08001 * 126.44574 * 0.02562 * 3 2 1 25 25 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 26 26 H 1.08996 * 112.85091 * 290.32884 * 16 6 5 27 27 H 1.09003 * 113.61709 * 334.56762 * 17 16 6 28 28 H 1.09001 * 113.62092 * 105.47141 * 17 16 6 29 29 H 1.09000 * 113.53467 * 270.81118 * 18 17 16 30 30 H 1.08997 * 113.74479 * 139.94689 * 18 17 16 31 31 H 1.09001 * 113.61212 * 220.09882 * 19 18 17 32 32 H 1.08997 * 113.61420 * 89.18963 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0846 0.0000 4 8 3.5734 0.6447 -0.0006 5 6 3.5431 -0.6947 -0.0003 6 6 4.7480 -1.5997 -0.0003 7 1 4.4212 -2.6396 -0.0005 8 6 5.5766 -1.3332 -1.2306 9 1 5.2623 -0.5832 -1.9412 10 6 6.7358 -2.0470 -1.4489 11 7 7.1182 -2.9607 -0.5837 12 14 7.7632 -1.7161 -2.9735 13 1 8.2089 -0.2996 -2.9723 14 1 8.9505 -2.6081 -2.9735 15 1 6.9472 -1.9773 -4.1865 16 6 5.5887 -1.3296 1.2492 17 6 6.5269 -2.4894 1.6229 18 6 6.1587 -2.2080 3.0910 19 6 4.8436 -1.6089 2.5652 20 7 2.3006 -1.0856 -0.0055 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5134 24 1 1.9768 2.1152 0.0004 25 1 7.9340 -3.4626 -0.7372 26 1 6.0831 -0.3586 1.2249 27 1 6.1846 -3.4605 1.2653 28 1 7.5741 -2.2965 1.3897 29 1 6.8101 -1.4776 3.5709 30 1 6.0198 -3.1087 3.6890 31 1 4.5339 -0.7060 3.0915 32 1 4.0403 -2.3388 2.4657 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261111319.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:41 Heat of formation + Delta-G solvation = 40.081572 kcal Electronic energy + Delta-G solvation = -15292.582713 eV Core-core repulsion = 12834.686010 eV Total energy + Delta-G solvation = -2457.896704 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.44386 -37.84410 -34.32542 -33.22472 -31.45453 -29.18305 -26.31703 -24.51365 -24.31321 -22.48640 -20.71920 -19.72378 -18.19957 -16.61881 -16.26718 -15.59331 -14.75772 -14.28372 -14.03052 -13.47091 -13.18144 -12.92380 -12.47604 -12.34166 -11.71636 -11.32075 -11.13975 -11.03510 -10.69900 -10.52054 -10.24150 -10.11356 -9.97349 -9.68959 -9.41924 -8.99439 -8.77416 -8.37658 -7.82307 -6.00495 -4.19724 2.30475 3.28227 3.32220 3.35074 3.51392 3.74113 4.34627 4.88407 5.16314 5.37002 5.52186 5.74009 5.81929 5.83814 5.88744 6.00050 6.08093 6.32265 6.48643 6.62124 6.67798 6.70046 6.76931 6.95653 7.08342 7.18138 7.36139 7.56924 7.71449 7.82445 7.96133 8.10404 8.69783 8.77770 9.43167 10.89170 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024725 B = 0.011028 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.198740 B = 2538.373266 C = 3367.039651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.023 4.023 3 C -0.121 4.121 4 O -0.198 6.198 5 C 0.264 3.736 6 C 0.139 3.861 7 H 0.072 0.928 8 C -0.520 4.520 9 H 0.058 0.942 10 C 0.068 3.932 11 N -0.873 5.873 12 Si 0.900 3.100 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.277 1.277 16 C -0.083 4.083 17 C -0.046 4.046 18 C -0.175 4.175 19 C -0.147 4.147 20 N -0.518 5.518 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.199 0.801 25 H 0.264 0.736 26 H 0.069 0.931 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 4.262 3.372 7.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.143 4.143 3 C -0.192 4.192 4 O -0.084 6.084 5 C 0.057 3.943 6 C 0.119 3.881 7 H 0.090 0.910 8 C -0.558 4.558 9 H 0.076 0.924 10 C -0.135 4.135 11 N -0.510 5.510 12 Si 0.727 3.273 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.202 1.202 16 C -0.102 4.102 17 C -0.084 4.084 18 C -0.214 4.214 19 C -0.184 4.184 20 N -0.247 5.247 21 H 0.086 0.914 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.216 0.784 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.459 3.509 3.380 7.317 hybrid contribution 0.587 1.143 -0.819 1.524 sum -4.872 4.652 2.561 7.207 Atomic orbital electron populations 1.19990 0.87689 1.02448 1.02104 1.21721 0.97577 0.89187 1.05769 1.24438 0.81585 1.00241 1.12959 1.84496 1.29296 1.25217 1.69439 1.27666 0.95637 0.78636 0.92311 1.17786 0.83492 0.91274 0.95527 0.91003 1.20856 1.07411 1.21894 1.05648 0.92360 1.24910 0.96983 0.95019 0.96595 1.70238 1.23998 1.23205 1.33515 0.86524 0.79460 0.78217 0.83071 1.20235 1.21069 1.20225 1.22432 0.97039 0.99423 0.91337 1.22600 0.99440 0.99052 0.87341 1.23331 0.97866 0.99387 1.00765 1.23019 0.96806 0.99455 0.99128 1.70445 1.01050 1.30699 1.22552 0.91415 0.91129 0.91526 0.78410 0.92577 0.91225 0.89099 0.91913 0.92203 0.93337 0.93969 0.91111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.43 36.01 0.38 -0.52 16 2 C -0.02 -0.44 7.11 -82.81 -0.59 -1.03 16 3 C -0.12 -2.21 12.08 29.36 0.35 -1.85 16 4 O -0.20 -4.43 10.78 5.36 0.06 -4.37 16 5 C 0.26 6.29 6.31 -12.95 -0.08 6.21 16 6 C 0.14 3.47 2.16 -92.92 -0.20 3.27 16 7 H 0.07 1.93 7.98 -51.93 -0.41 1.52 16 8 C -0.52 -13.99 8.55 -34.44 -0.29 -14.28 16 9 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 10 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 11 N -0.87 -22.56 8.02 55.43 0.44 -22.12 16 12 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 C -0.08 -1.90 2.97 -89.81 -0.27 -2.17 16 17 C -0.05 -1.03 4.99 -25.83 -0.13 -1.16 16 18 C -0.18 -3.36 8.09 -25.83 -0.21 -3.57 16 19 C -0.15 -2.99 7.15 -25.92 -0.19 -3.18 16 20 N -0.52 -11.90 11.29 -7.36 -0.08 -11.98 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.20 2.61 8.06 -52.49 -0.42 2.18 16 25 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 26 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 27 H 0.09 2.18 6.98 -51.93 -0.36 1.81 16 28 H 0.06 1.47 7.14 -51.93 -0.37 1.09 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 LS Contribution 267.38 15.07 4.03 4.03 Total: -1.00 -27.97 267.38 -6.38 -34.35 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -4.49 Total: 1.07 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.32 Total: -16.60 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.36 Total: -34.10 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: 0.06 Total: -4.37 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.97 -6.38 -34.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261111319.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.436 kcal (2) G-P(sol) polarization free energy of solvation -27.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds