Wall clock time and date at job start Mon Mar 30 2020 03:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47312 * 2 1 4 4 C 1.52998 * 109.47381 * 120.00329 * 2 1 3 5 5 O 1.42898 * 109.47472 * 174.99595 * 4 2 1 6 6 C 1.35519 * 117.00420 * 179.97438 * 5 4 2 7 7 C 1.38893 * 120.97010 * 0.02562 * 6 5 4 8 8 C 1.38159 * 119.34923 * 179.97438 * 7 6 5 9 9 N 1.32232 * 121.41631 * 359.97438 * 8 7 6 10 10 C 1.31463 * 122.16157 * 0.02562 * 9 8 7 11 11 C 1.40658 * 120.45204 * 359.97438 * 10 9 8 12 12 C 1.41209 * 120.71784 * 180.02562 * 11 10 9 13 13 H 1.07998 * 119.99761 * 155.23054 * 12 11 10 14 14 C 1.39935 * 120.00270 * 335.23227 * 12 11 10 15 15 N 1.30866 * 119.99375 * 343.02179 * 14 12 11 16 16 Si 1.86795 * 120.00159 * 163.02387 * 14 12 11 17 17 H 1.48495 * 109.47392 * 90.00053 * 16 14 12 18 18 H 1.48504 * 109.46879 * 210.00110 * 16 14 12 19 19 H 1.48504 * 109.47180 * 329.99502 * 16 14 12 20 20 H 1.08994 * 109.47112 * 299.99581 * 1 2 3 21 21 H 1.08997 * 109.47234 * 59.99986 * 1 2 3 22 22 H 1.09000 * 109.47066 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46872 * 240.00038 * 2 1 3 24 24 H 1.08997 * 109.46982 * 300.00168 * 3 2 1 25 25 H 1.09000 * 109.47121 * 60.00190 * 3 2 1 26 26 H 1.08994 * 109.47282 * 180.02562 * 3 2 1 27 27 H 1.09007 * 109.47342 * 54.99705 * 4 2 1 28 28 H 1.08995 * 109.47068 * 295.00192 * 4 2 1 29 29 H 1.07998 * 120.32831 * 0.02562 * 7 6 5 30 30 H 1.07995 * 119.28609 * 180.27208 * 8 7 6 31 31 H 1.08008 * 119.77645 * 180.02562 * 10 9 8 32 32 H 0.97005 * 119.99630 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 3.4642 -0.8239 1.1919 6 6 4.0789 -1.4408 2.2303 7 6 3.3462 -1.9468 3.2962 8 6 4.0073 -2.5699 4.3371 9 7 5.3236 -2.6958 4.3406 10 6 6.0729 -2.2385 3.3621 11 6 5.4880 -1.5894 2.2598 12 6 6.2874 -1.0965 1.2053 13 1 5.8642 -0.9721 0.2195 14 6 7.6280 -0.7692 1.4376 15 7 8.0568 -0.5975 2.6621 16 14 8.8053 -0.5775 0.0001 17 1 8.7988 0.8343 -0.4602 18 1 10.1766 -0.9517 0.4301 19 1 8.3765 -1.4629 -1.1124 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 3.1299 1.4425 -0.0005 27 1 1.6054 -1.7199 1.2951 28 1 1.7517 -0.1585 2.1369 29 1 2.2703 -1.8548 3.3109 30 1 3.4363 -2.9670 5.1633 31 1 7.1450 -2.3627 3.4043 32 1 8.9860 -0.3703 2.8231 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261217037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:39 Heat of formation + Delta-G solvation = -32.578416 kcal Electronic energy + Delta-G solvation = -14845.693940 eV Core-core repulsion = 12384.646463 eV Total energy + Delta-G solvation = -2461.047477 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.05448 -37.17796 -34.82164 -33.92900 -30.12023 -29.53809 -27.01371 -26.18454 -25.38713 -21.71848 -21.17308 -19.86157 -17.54679 -16.90928 -15.81058 -15.39078 -14.76179 -14.04778 -13.86432 -13.64924 -13.47726 -12.72151 -12.59895 -12.19996 -12.04984 -11.99359 -11.49996 -11.18827 -11.03579 -10.89005 -10.77041 -10.59463 -10.40808 -10.20913 -9.77782 -9.29353 -7.99819 -7.69895 -7.46807 -6.83335 -4.33700 2.64707 2.89019 3.06850 3.11131 3.19930 3.91416 4.11972 4.64852 5.01556 5.06265 5.33426 5.60464 5.67579 5.69900 5.73578 5.88409 5.96564 6.01809 6.08493 6.12695 6.19264 6.38891 6.51298 6.56591 6.84986 7.10521 7.25313 7.40132 7.48458 8.02217 8.28787 8.46095 8.71578 8.89113 9.76253 10.13508 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.009869 C = 0.007178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.836361 B = 2836.573312 C = 3899.615245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.145 4.145 4 C 0.067 3.933 5 O -0.303 6.303 6 C 0.042 3.958 7 C -0.228 4.228 8 C -0.015 4.015 9 N -0.492 5.492 10 C 0.053 3.947 11 C 0.050 3.950 12 C -0.435 4.435 13 H 0.084 0.916 14 C 0.072 3.928 15 N -0.794 5.794 16 Si 0.913 3.087 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.260 1.260 20 H 0.055 0.945 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.078 0.922 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.156 0.844 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 2.060 -4.940 9.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.009 4.009 5 O -0.216 6.216 6 C -0.009 4.009 7 C -0.249 4.249 8 C -0.171 4.171 9 N -0.203 5.203 10 C -0.109 4.109 11 C 0.046 3.954 12 C -0.465 4.465 13 H 0.102 0.898 14 C -0.146 4.146 15 N -0.419 5.419 16 Si 0.737 3.263 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.184 1.184 20 H 0.074 0.926 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.096 0.904 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.137 0.863 31 H 0.173 0.827 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.326 1.814 -4.288 8.681 hybrid contribution -0.169 0.563 -1.046 1.199 sum -7.495 2.376 -5.334 9.501 Atomic orbital electron populations 1.21767 0.94620 1.01764 1.01920 1.21080 0.95049 0.97085 0.98079 1.21787 1.02655 0.94900 1.00857 1.22593 0.81591 0.99002 0.97701 1.85910 1.18733 1.74671 1.42293 1.19419 0.92745 1.00289 0.88446 1.21548 0.98594 1.07106 0.97668 1.21477 0.90691 1.06223 0.98660 1.67132 1.06280 1.18953 1.27934 1.22859 0.99408 0.98013 0.90626 1.18096 0.87903 0.93740 0.95695 1.19369 0.93895 1.36368 0.96897 0.89769 1.25960 0.99067 0.92697 0.96888 1.69788 1.17680 1.33151 1.21316 0.86223 0.78944 0.79525 0.81581 1.19443 1.19959 1.18367 0.92610 0.92218 0.92645 0.90403 0.93153 0.93058 0.91272 0.93429 0.93281 0.87947 0.86339 0.82696 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 2 C -0.09 -1.34 3.16 -90.62 -0.29 -1.62 16 3 C -0.14 -2.04 9.09 37.16 0.34 -1.70 16 4 C 0.07 1.17 4.15 37.16 0.15 1.32 16 5 O -0.30 -6.88 9.08 -18.25 -0.17 -7.04 16 6 C 0.04 1.06 6.76 -38.01 -0.26 0.80 16 7 C -0.23 -5.27 9.10 -39.37 -0.36 -5.63 16 8 C -0.01 -0.36 11.16 -17.41 -0.19 -0.55 16 9 N -0.49 -13.04 10.33 -12.65 -0.13 -13.17 16 10 C 0.05 1.45 9.89 -16.80 -0.17 1.28 16 11 C 0.05 1.38 5.59 -106.53 -0.60 0.79 16 12 C -0.44 -11.68 8.78 -37.82 -0.33 -12.01 16 13 H 0.08 2.22 7.72 -52.49 -0.40 1.82 16 14 C 0.07 1.79 5.17 -17.33 -0.09 1.70 16 15 N -0.79 -20.50 10.95 55.55 0.61 -19.90 16 16 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 17 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 19 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 20 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.15 7.82 -51.93 -0.41 0.74 16 27 H 0.05 0.79 7.71 -51.93 -0.40 0.39 16 28 H 0.05 0.83 7.71 -51.93 -0.40 0.43 16 29 H 0.10 2.02 6.45 -52.49 -0.34 1.69 16 30 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 31 H 0.16 4.30 6.17 -52.48 -0.32 3.98 16 32 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 272.09 15.07 4.10 4.10 Total: -1.00 -28.78 272.09 -6.43 -35.21 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -4.37 Total: 4.02 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.45 Total: -16.84 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.48 Total: -33.07 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.17 Total: -7.04 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.78 -6.43 -35.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261217037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.629 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds