Wall clock time and date at job start Mon Mar 30 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47026 * 2 1 4 4 C 1.50697 * 109.47113 * 119.99381 * 2 1 3 5 5 N 1.30177 * 125.61688 * 119.73999 * 4 2 1 6 6 C 1.34786 * 108.72263 * 179.84803 * 5 4 2 7 7 C 1.34074 * 107.59431 * 0.35683 * 6 5 4 8 8 O 1.33905 * 125.62036 * 299.98036 * 4 2 1 9 9 C 1.51228 * 110.52216 * 179.77060 * 7 6 5 10 10 C 1.54491 * 104.93269 * 16.81841 * 9 7 6 11 11 C 1.51319 * 142.00205 * 180.02562 * 6 5 4 12 12 H 1.09001 * 110.34482 * 282.37090 * 11 6 5 13 13 C 1.50697 * 110.34647 * 44.63178 * 11 6 5 14 14 H 1.07998 * 120.00478 * 118.54708 * 13 11 6 15 15 C 1.37883 * 120.00035 * 298.54547 * 13 11 6 16 16 N 1.31515 * 119.99741 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00032 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46982 * 90.00147 * 17 15 13 19 19 H 1.48501 * 109.47343 * 209.99820 * 17 15 13 20 20 H 1.48496 * 109.47346 * 330.00297 * 17 15 13 21 21 H 1.09004 * 109.46775 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47659 * 300.00158 * 1 2 3 23 23 H 1.08995 * 109.47211 * 60.00799 * 1 2 3 24 24 H 1.08997 * 109.47659 * 239.99842 * 2 1 3 25 25 H 1.09000 * 109.47516 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.47187 * 299.99854 * 3 2 1 27 27 H 1.09006 * 109.47121 * 59.99297 * 3 2 1 28 28 H 1.08995 * 110.34698 * 135.67833 * 9 7 6 29 29 H 1.08994 * 110.35084 * 257.95270 * 9 7 6 30 30 H 1.09003 * 110.95415 * 92.67074 * 10 9 7 31 31 H 1.09008 * 110.95027 * 216.38974 * 10 9 7 32 32 H 0.97004 * 120.00186 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.7799 -1.7759 1.2386 6 6 3.0294 -2.1196 2.5178 7 6 2.4031 -1.2334 3.3052 8 8 1.7795 -0.3519 2.4957 9 6 2.6356 -1.5620 4.7629 10 6 3.8445 -2.5239 4.7662 11 6 3.7569 -3.1482 3.3560 12 1 3.1911 -4.0792 3.3888 13 6 5.1378 -3.3922 2.8040 14 1 6.0067 -3.1778 3.4084 15 6 5.2918 -3.8893 1.5272 16 7 4.2337 -4.1510 0.7913 17 14 7.0034 -4.1912 0.8426 18 1 7.4286 -5.5767 1.1661 19 1 6.9862 -4.0101 -0.6312 20 1 7.9562 -3.2268 1.4487 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 3.1300 1.4426 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 2.8702 -0.6567 5.3227 29 1 1.7591 -2.0533 5.1851 30 1 4.7783 -1.9760 4.8925 31 1 3.7340 -3.2861 5.5377 32 1 4.3420 -4.5011 -0.1069 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261221416.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:46 Heat of formation + Delta-G solvation = 2.626147 kcal Electronic energy + Delta-G solvation = -15267.048569 eV Core-core repulsion = 12807.527676 eV Total energy + Delta-G solvation = -2459.520893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -44.01505 -38.28059 -36.36324 -34.60586 -34.38430 -29.75704 -28.50143 -28.10600 -25.65766 -24.12638 -22.34266 -21.33624 -20.43009 -18.53812 -17.60648 -17.08725 -16.50276 -16.13683 -15.35790 -15.34690 -14.57030 -14.11525 -13.93861 -13.68256 -13.16924 -13.06703 -13.00225 -12.67384 -12.43716 -12.40861 -12.24749 -12.04110 -11.96320 -11.77391 -11.23039 -11.05919 -10.69996 -10.45758 -9.05532 -8.01966 -6.17246 0.79919 1.38137 1.39923 1.48919 1.66085 2.21250 2.45952 3.10454 3.29219 3.85817 3.99393 4.11261 4.24618 4.30013 4.34631 4.55031 4.70230 4.74411 4.85414 4.87647 4.95446 5.00989 5.07204 5.17354 5.27833 5.28840 5.36379 5.51151 5.60524 5.78957 5.95597 6.27283 6.88358 7.32932 7.49861 9.02588 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025944 B = 0.010831 C = 0.008421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.972075 B = 2584.522944 C = 3324.267942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.007 3.993 3 C -0.137 4.137 4 C 0.153 3.847 5 N -0.471 5.471 6 C 0.014 3.986 7 C -0.152 4.152 8 O -0.203 6.203 9 C 0.002 3.998 10 C -0.099 4.099 11 C 0.096 3.904 12 H 0.012 0.988 13 C -0.550 4.550 14 H 0.059 0.941 15 C 0.019 3.981 16 N -0.876 5.876 17 Si 0.949 3.051 18 H -0.270 1.270 19 H -0.290 1.290 20 H -0.270 1.270 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.103 0.897 24 H 0.100 0.900 25 H 0.042 0.958 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.223 9.358 2.114 11.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.012 4.012 3 C -0.195 4.195 4 C -0.054 4.054 5 N -0.198 5.198 6 C -0.107 4.107 7 C -0.204 4.204 8 O -0.092 6.092 9 C -0.035 4.035 10 C -0.137 4.137 11 C 0.077 3.923 12 H 0.030 0.970 13 C -0.588 4.588 14 H 0.078 0.922 15 C -0.184 4.184 16 N -0.511 5.511 17 Si 0.775 3.225 18 H -0.195 1.195 19 H -0.217 1.217 20 H -0.195 1.195 21 H 0.063 0.937 22 H 0.081 0.919 23 H 0.122 0.878 24 H 0.118 0.882 25 H 0.061 0.939 26 H 0.122 0.878 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.098 8.999 1.408 10.961 hybrid contribution 0.718 -0.262 -0.276 0.812 sum -5.380 8.737 1.133 10.323 Atomic orbital electron populations 1.21816 0.91230 1.02192 1.04178 1.19844 0.97759 0.95976 0.87622 1.21827 1.00673 0.92817 1.04203 1.27467 0.98512 0.94160 0.85220 1.70020 1.13813 1.11191 1.24801 1.23253 0.99220 1.00341 0.87871 1.24654 1.02792 0.94019 0.98968 1.83991 1.59865 1.47746 1.17584 1.20667 0.99657 1.00309 0.82873 1.22489 0.96846 0.97996 0.96330 1.17971 0.94004 0.90455 0.89840 0.97018 1.21321 0.92135 1.45076 1.00240 0.92249 1.25778 0.99790 0.95315 0.97499 1.70186 1.30023 1.41808 1.09044 0.85705 0.80933 0.78711 0.77129 1.19528 1.21656 1.19481 0.93716 0.91921 0.87819 0.88207 0.93873 0.87783 0.91903 0.88272 0.88034 0.91078 0.88006 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 9.18 71.98 0.66 -2.74 16 2 C 0.01 0.23 3.39 -11.54 -0.04 0.20 16 3 C -0.14 -3.47 9.17 71.98 0.66 -2.81 16 4 C 0.15 6.83 6.85 88.35 0.60 7.44 16 5 N -0.47 -25.91 10.29 -291.51 -3.00 -28.91 16 6 C 0.01 0.74 6.51 41.35 0.27 1.01 16 7 C -0.15 -6.94 8.24 24.90 0.21 -6.74 16 8 O -0.20 -8.92 10.78 -5.19 -0.06 -8.97 16 9 C 0.00 0.07 6.79 30.52 0.21 0.28 16 10 C -0.10 -3.82 6.63 31.60 0.21 -3.61 16 11 C 0.10 5.09 2.83 -11.59 -0.03 5.06 16 12 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 13 C -0.55 -31.77 8.53 25.60 0.22 -31.55 16 14 H 0.06 3.29 7.63 -2.91 -0.02 3.27 16 15 C 0.02 1.14 5.32 84.66 0.45 1.59 16 16 N -0.88 -54.58 11.69 21.45 0.25 -54.33 16 17 Si 0.95 46.17 29.54 68.60 2.03 48.20 16 18 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 21 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 25 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 28 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 30 H 0.07 2.72 7.79 -2.39 -0.02 2.70 16 31 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 32 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -74.54 270.35 3.73 -70.81 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.10 Total: 5.09 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 3.41 Total: -31.88 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.75 Total: -83.24 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.06 Total: -8.97 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -74.54 3.73 -70.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261221416.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.431 kcal (2) G-P(sol) polarization free energy of solvation -74.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds