Wall clock time and date at job start Mon Mar 30 2020 03:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.50697 * 109.46967 * 120.00264 * 2 1 3 5 5 N 1.30177 * 125.61688 * 299.75943 * 4 2 1 6 6 C 1.34786 * 108.72263 * 179.84803 * 5 4 2 7 7 C 1.34074 * 107.59431 * 0.35683 * 6 5 4 8 8 O 1.33905 * 125.62036 * 119.99980 * 4 2 1 9 9 C 1.51228 * 110.52216 * 179.77060 * 7 6 5 10 10 H 1.09004 * 110.34950 * 135.78366 * 9 7 6 11 11 C 1.50696 * 110.35124 * 257.95430 * 9 7 6 12 12 H 1.08000 * 120.00468 * 118.53748 * 11 9 7 13 13 C 1.37879 * 119.99702 * 298.55069 * 11 9 7 14 14 N 1.31512 * 119.99793 * 180.02562 * 13 11 9 15 15 Si 1.86806 * 120.00051 * 359.97438 * 13 11 9 16 16 H 1.48495 * 109.46596 * 90.00482 * 15 13 11 17 17 H 1.48501 * 109.47080 * 210.00603 * 15 13 11 18 18 H 1.48500 * 109.47016 * 330.00750 * 15 13 11 19 19 C 1.54491 * 104.93269 * 16.81841 * 9 7 6 20 20 C 1.51319 * 142.00205 * 180.02562 * 6 5 4 21 21 H 1.08994 * 109.47545 * 299.99681 * 1 2 3 22 22 H 1.09005 * 109.47062 * 60.00313 * 1 2 3 23 23 H 1.09003 * 109.47073 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47172 * 239.99883 * 2 1 3 25 25 H 1.08996 * 109.46869 * 180.02562 * 3 2 1 26 26 H 1.08995 * 109.46862 * 299.99808 * 3 2 1 27 27 H 1.08994 * 109.47073 * 60.00036 * 3 2 1 28 28 H 0.97007 * 119.99823 * 179.97438 * 14 13 11 29 29 H 1.09003 * 110.95415 * 92.67074 * 19 9 7 30 30 H 1.09008 * 110.95027 * 216.38974 * 19 9 7 31 31 H 1.09001 * 110.34482 * 282.37090 * 20 6 5 32 32 H 1.09000 * 110.34602 * 44.63129 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7897 -0.3598 2.4604 6 6 2.4001 -1.2319 3.2873 7 6 3.0377 -2.1332 2.5266 8 8 2.8053 -1.8038 1.2387 9 6 3.7538 -3.1457 3.3921 10 1 3.5935 -4.1533 3.0083 11 6 5.2275 -2.8364 3.4504 12 1 5.6936 -2.6042 4.3966 13 6 5.9808 -2.8496 2.2957 14 7 7.2671 -2.5802 2.3467 15 14 5.1748 -3.2516 0.6592 16 1 4.6836 -2.0000 0.0288 17 1 6.1671 -3.9000 -0.2353 18 1 4.0330 -4.1742 0.8832 19 6 3.1173 -2.9940 4.7916 20 6 2.6135 -1.5344 4.7545 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1299 1.4424 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 7.7972 -2.5898 1.5343 29 1 2.2878 -3.6894 4.9200 30 1 3.8626 -3.1296 5.5755 31 1 3.3638 -0.8643 5.1743 32 1 1.6747 -1.4431 5.3007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261225966.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:54 Heat of formation + Delta-G solvation = 24.100954 kcal Electronic energy + Delta-G solvation = -15438.328226 eV Core-core repulsion = 12979.738550 eV Total energy + Delta-G solvation = -2458.589675 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.60697 -36.83632 -35.36713 -33.39379 -32.21925 -28.22164 -27.26362 -27.09775 -23.85498 -23.11764 -20.35294 -19.66882 -19.58884 -17.23780 -16.03738 -15.86432 -14.68278 -14.29825 -14.24490 -13.75564 -13.23114 -12.96366 -12.58309 -12.15131 -12.09621 -11.67250 -11.45829 -11.18571 -11.07734 -10.89724 -10.85885 -10.75277 -10.15495 -9.91541 -9.82809 -9.64299 -9.41176 -8.72289 -7.47427 -6.27230 -4.30248 2.38356 2.90264 3.32770 3.40355 3.47015 3.62501 4.30210 4.32540 4.95723 5.06919 5.18316 5.21866 5.56365 5.63299 5.67365 5.78061 5.79443 5.90673 5.94402 6.08877 6.21174 6.30476 6.34793 6.45630 6.59095 6.62551 6.79414 6.89658 7.13178 7.23823 7.46464 8.25945 8.57602 8.74974 9.33221 10.82873 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026780 B = 0.012768 C = 0.009905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.300610 B = 2192.451203 C = 2826.259538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.010 3.990 3 C -0.141 4.141 4 C 0.147 3.853 5 N -0.460 5.460 6 C -0.075 4.075 7 C -0.030 4.030 8 O -0.191 6.191 9 C 0.100 3.900 10 H 0.045 0.955 11 C -0.514 4.514 12 H 0.087 0.913 13 C 0.079 3.921 14 N -0.883 5.883 15 Si 0.873 3.127 16 H -0.261 1.261 17 H -0.288 1.288 18 H -0.263 1.263 19 C -0.101 4.101 20 C -0.020 4.020 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.268 0.732 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.996 3.022 -2.965 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.009 4.009 3 C -0.199 4.199 4 C -0.059 4.059 5 N -0.190 5.190 6 C -0.194 4.194 7 C -0.084 4.084 8 O -0.078 6.078 9 C 0.081 3.919 10 H 0.063 0.937 11 C -0.551 4.551 12 H 0.105 0.895 13 C -0.126 4.126 14 N -0.519 5.519 15 Si 0.701 3.299 16 H -0.187 1.187 17 H -0.215 1.215 18 H -0.187 1.187 19 C -0.139 4.139 20 C -0.058 4.058 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.155 3.547 -2.934 12.068 hybrid contribution 0.259 -0.549 -1.315 1.449 sum -10.896 2.998 -4.250 12.074 Atomic orbital electron populations 1.21797 0.92873 1.02350 1.02622 1.19426 0.96149 0.95061 0.90284 1.21810 1.01633 0.93900 1.02559 1.25956 0.96284 0.88488 0.95157 1.69518 1.22989 1.27026 0.99443 1.22145 1.03382 0.95577 0.98295 1.25842 0.98681 1.04148 0.79707 1.84463 1.54265 1.39667 1.29421 1.18767 0.94523 0.91162 0.87490 0.93734 1.20963 0.88644 1.48985 0.96470 0.89523 1.25061 0.94728 0.93410 0.99386 1.69893 1.06068 1.46723 1.29190 0.86783 0.78957 0.80115 0.84018 1.18692 1.21465 1.18744 1.22375 0.99397 0.94504 0.97599 1.20265 1.00359 0.97258 0.87874 0.91356 0.91639 0.92531 0.89314 0.92331 0.91639 0.91325 0.92228 0.92045 0.89416 0.90321 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.17 37.16 0.34 -1.42 16 2 C 0.01 0.16 3.39 -91.78 -0.31 -0.15 16 3 C -0.14 -1.97 9.18 37.16 0.34 -1.63 16 4 C 0.15 3.12 6.85 -12.98 -0.09 3.03 16 5 N -0.46 -10.22 11.30 -7.18 -0.08 -10.31 16 6 C -0.07 -1.71 7.98 -82.46 -0.66 -2.37 16 7 C -0.03 -0.73 5.89 -35.52 -0.21 -0.94 16 8 O -0.19 -4.66 7.17 4.95 0.04 -4.62 16 9 C 0.10 2.38 2.36 -91.88 -0.22 2.17 16 10 H 0.04 1.06 7.28 -51.93 -0.38 0.68 16 11 C -0.51 -14.23 9.12 -34.44 -0.31 -14.55 16 12 H 0.09 2.51 7.81 -52.49 -0.41 2.10 16 13 C 0.08 2.29 5.45 -17.82 -0.10 2.19 16 14 N -0.88 -26.71 13.96 55.43 0.77 -25.93 16 15 Si 0.87 22.48 24.08 -169.99 -4.09 18.39 16 16 H -0.26 -6.77 6.28 56.52 0.36 -6.41 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.26 -6.61 6.57 56.52 0.37 -6.24 16 19 C -0.10 -1.92 6.65 -25.18 -0.17 -2.09 16 20 C -0.02 -0.38 6.78 -26.81 -0.18 -0.56 16 21 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.09 1.58 7.73 -51.92 -0.40 1.17 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 261.84 15.07 3.95 3.95 Total: -1.00 -32.00 261.84 -5.61 -37.61 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -4.63 Total: -2.77 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -1.56 Total: -16.32 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.69 Total: -36.24 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: 0.04 Total: -4.62 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.09 Total: 18.39 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.00 -5.61 -37.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261225966.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.714 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds