Wall clock time and date at job start Mon Mar 30 2020 03:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47306 * 2 1 4 4 C 1.53004 * 109.47062 * 119.99419 * 2 1 3 5 5 O 1.42902 * 109.47369 * 174.99637 * 4 2 1 6 6 C 1.35638 * 116.99862 * 179.97438 * 5 4 2 7 7 C 1.38634 * 120.72128 * 0.25728 * 6 5 4 8 8 N 1.31841 * 120.74753 * 180.30867 * 7 6 5 9 9 C 1.32105 * 122.41835 * 359.70794 * 8 7 6 10 10 C 1.36541 * 121.35405 * 0.02562 * 9 8 7 11 11 C 1.41094 * 119.05251 * 359.97438 * 10 9 8 12 12 C 1.41196 * 121.06948 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00205 * 155.36763 * 12 11 10 14 14 C 1.40058 * 119.99944 * 335.36476 * 12 11 10 15 15 N 1.30761 * 119.99961 * 334.55191 * 14 12 11 16 16 Si 1.86797 * 120.00149 * 154.55870 * 14 12 11 17 17 H 1.48500 * 109.47651 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.46864 * 299.99612 * 16 14 12 19 19 H 1.48499 * 109.47277 * 59.99608 * 16 14 12 20 20 H 1.09003 * 109.46926 * 300.00175 * 1 2 3 21 21 H 1.08991 * 109.46724 * 59.99946 * 1 2 3 22 22 H 1.09001 * 109.47164 * 180.02562 * 1 2 3 23 23 H 1.08990 * 109.47351 * 239.99358 * 2 1 3 24 24 H 1.09000 * 109.47215 * 300.00020 * 3 2 1 25 25 H 1.09004 * 109.47347 * 59.99488 * 3 2 1 26 26 H 1.09006 * 109.47169 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.46801 * 54.99821 * 4 2 1 28 28 H 1.08999 * 109.47458 * 295.00404 * 4 2 1 29 29 H 1.08000 * 119.62020 * 0.02562 * 7 6 5 30 30 H 1.08005 * 119.32870 * 180.02562 * 9 8 7 31 31 H 1.07996 * 120.47242 * 180.02562 * 10 9 8 32 32 H 0.96993 * 120.00075 * 354.64865 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 3.4642 -0.8238 1.1922 6 6 4.0793 -1.4411 2.2316 7 6 3.3424 -1.9483 3.2906 8 7 3.9402 -2.5430 4.3041 9 6 5.2514 -2.6919 4.3646 10 6 6.0653 -2.2320 3.3694 11 6 5.4881 -1.5857 2.2559 12 6 6.2895 -1.0941 1.2025 13 1 5.8686 -0.9726 0.2152 14 6 7.6301 -0.7641 1.4377 15 7 8.0193 -0.4272 2.6398 16 14 8.8622 -0.8051 0.0343 17 1 10.2032 -0.4179 0.5413 18 1 8.9243 -2.1773 -0.5299 19 1 8.4389 0.1466 -1.0241 20 1 -0.3633 0.5139 0.8900 21 1 -0.3632 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8898 24 1 1.6768 1.9563 -0.8900 25 1 1.6767 1.9564 0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6053 -1.7197 1.2953 28 1 1.7516 -0.1582 2.1370 29 1 2.2668 -1.8511 3.2875 30 1 5.6887 -3.1877 5.2187 31 1 7.1355 -2.3618 3.4333 32 1 7.3672 -0.3303 3.3513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261231536.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:42 Heat of formation + Delta-G solvation = -54.670590 kcal Electronic energy + Delta-G solvation = -14886.601136 eV Core-core repulsion = 12424.595670 eV Total energy + Delta-G solvation = -2462.005466 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01965 -38.96555 -36.38751 -36.08376 -32.19767 -30.90470 -28.07862 -27.65510 -27.45987 -23.60063 -23.27994 -21.16488 -20.13353 -18.51842 -17.39096 -17.06859 -16.83397 -15.69889 -15.39997 -15.18760 -15.01315 -14.59882 -14.16646 -13.86440 -13.69622 -13.34576 -13.01238 -12.88470 -12.48412 -12.28532 -12.02208 -11.97752 -11.78198 -11.65571 -11.57210 -11.05719 -10.15595 -10.01362 -9.42644 -9.09591 -6.59151 0.65094 0.80317 1.49804 1.63847 1.80224 2.29109 2.55133 2.65023 3.44275 3.76355 3.85401 3.94112 4.14877 4.22427 4.34856 4.47274 4.54769 4.68981 4.77392 4.80989 4.93355 4.98077 5.01242 5.16009 5.27721 5.31267 5.37323 5.41818 5.64198 5.90613 6.08925 6.29590 6.72128 6.91504 7.51318 7.91892 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023017 B = 0.009792 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.183155 B = 2858.689374 C = 3874.989109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 C -0.142 4.142 4 C 0.057 3.943 5 O -0.322 6.322 6 C -0.043 4.043 7 C 0.022 3.978 8 N -0.565 5.565 9 C 0.082 3.918 10 C -0.269 4.269 11 C 0.068 3.932 12 C -0.520 4.520 13 H 0.074 0.926 14 C 0.006 3.994 15 N -0.801 5.801 16 Si 1.118 2.882 17 H -0.266 1.266 18 H -0.262 1.262 19 H -0.258 1.258 20 H 0.062 0.938 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.033 0.967 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 1.848 -5.750 9.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.019 4.019 5 O -0.235 6.235 6 C -0.091 4.091 7 C -0.130 4.130 8 N -0.281 5.281 9 C -0.072 4.072 10 C -0.292 4.292 11 C 0.060 3.940 12 C -0.550 4.550 13 H 0.092 0.908 14 C -0.212 4.212 15 N -0.424 5.424 16 Si 0.934 3.066 17 H -0.190 1.190 18 H -0.186 1.186 19 H -0.183 1.183 20 H 0.082 0.918 21 H 0.098 0.902 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.170 0.830 30 H 0.170 0.830 31 H 0.128 0.872 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.817 1.844 -5.529 8.968 hybrid contribution -1.190 0.002 0.227 1.211 sum -8.006 1.846 -5.302 9.778 Atomic orbital electron populations 1.21735 0.91481 1.02807 1.03305 1.21134 0.97421 0.96356 0.96049 1.21768 1.00323 0.95450 1.02434 1.22999 0.78922 1.00144 0.99794 1.85896 1.21600 1.74502 1.41549 1.20272 0.93167 1.04304 0.91402 1.22553 0.99479 0.99837 0.91142 1.67335 1.11974 1.21961 1.26867 1.21989 0.89332 0.97944 0.97924 1.21571 1.00104 1.08766 0.98767 1.17801 0.89811 0.92402 0.94000 1.20596 0.97801 1.39375 0.97245 0.90796 1.28575 1.00143 0.89661 1.02773 1.70554 1.40342 1.28116 1.03409 0.83005 0.73205 0.79076 0.71328 1.19016 1.18636 1.18269 0.91846 0.90232 0.91829 0.91058 0.90569 0.92531 0.94809 0.92486 0.92809 0.82984 0.83012 0.87248 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.19 71.98 0.66 -1.93 16 2 C -0.09 -2.46 3.16 -10.79 -0.03 -2.49 16 3 C -0.14 -3.89 9.09 71.98 0.65 -3.23 16 4 C 0.06 1.92 4.13 71.98 0.30 2.22 16 5 O -0.32 -14.85 9.10 -89.52 -0.81 -15.67 16 6 C -0.04 -2.20 6.75 23.20 0.16 -2.04 16 7 C 0.02 1.04 10.23 84.79 0.87 1.91 16 8 N -0.57 -27.52 10.32 -196.65 -2.03 -29.55 16 9 C 0.08 3.95 11.09 84.25 0.93 4.89 16 10 C -0.27 -14.14 7.98 22.57 0.18 -13.96 16 11 C 0.07 3.77 5.34 -21.01 -0.11 3.66 16 12 C -0.52 -28.62 8.73 23.44 0.20 -28.41 16 13 H 0.07 4.09 7.79 -2.91 -0.02 4.06 16 14 C 0.01 0.32 4.99 85.29 0.43 0.75 16 15 N -0.80 -42.88 12.35 21.85 0.27 -42.61 16 16 Si 1.12 42.75 30.00 68.60 2.06 44.81 16 17 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 18 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 19 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 20 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 21 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 23 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.03 1.13 7.82 -2.38 -0.02 1.11 16 27 H 0.06 1.81 7.68 -2.39 -0.02 1.79 16 28 H 0.05 1.76 7.70 -2.39 -0.02 1.74 16 29 H 0.15 6.08 6.34 -2.91 -0.02 6.06 16 30 H 0.15 6.23 8.06 -2.91 -0.02 6.21 16 31 H 0.11 5.81 6.54 -2.91 -0.02 5.80 16 32 H 0.28 15.94 6.63 -92.71 -0.61 15.33 16 Total: -1.00 -62.36 271.19 4.97 -57.39 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 1.25 Total: 24.28 kcal Atomic # 6 Polarization: -42.88 SS G_CDS: 4.24 Total: -38.65 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.76 Total: -72.16 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.81 Total: -15.67 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.06 Total: 44.81 kcal Total: -62.36 4.97 -57.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231536.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.722 kcal (2) G-P(sol) polarization free energy of solvation -62.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds