Wall clock time and date at job start Mon Mar 30 2020 03:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47278 * 2 1 4 4 C 1.53004 * 109.46758 * 120.00124 * 2 1 3 5 5 O 1.42900 * 109.47055 * 65.00146 * 4 2 1 6 6 C 1.35709 * 116.99823 * 179.97438 * 5 4 2 7 7 C 1.38500 * 119.63636 * 179.97438 * 6 5 4 8 8 C 1.40846 * 118.68677 * 180.29580 * 7 6 5 9 9 C 1.41541 * 121.00315 * 179.72303 * 8 7 6 10 10 H 1.08000 * 120.00138 * 23.28378 * 9 8 7 11 11 C 1.40025 * 120.00052 * 203.28877 * 9 8 7 12 12 N 1.30739 * 120.00425 * 17.00388 * 11 9 8 13 13 Si 1.86807 * 120.00036 * 197.01030 * 11 9 8 14 14 H 1.48497 * 109.47129 * 59.99216 * 13 11 9 15 15 H 1.48501 * 109.47061 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46681 * 299.99769 * 13 11 9 17 17 C 1.41150 * 117.99372 * 359.46441 * 8 7 6 18 18 C 1.36585 * 119.10320 * 0.53733 * 17 8 7 19 19 N 1.32097 * 121.23903 * 359.72339 * 18 17 8 20 20 H 1.08998 * 109.47348 * 60.00437 * 1 2 3 21 21 H 1.09000 * 109.47226 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.46944 * 299.99771 * 1 2 3 23 23 H 1.08998 * 109.47015 * 239.99678 * 2 1 3 24 24 H 1.08999 * 109.47227 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47273 * 300.00240 * 3 2 1 26 26 H 1.08998 * 109.47361 * 59.99889 * 3 2 1 27 27 H 1.08997 * 109.46897 * 304.99661 * 4 2 1 28 28 H 1.09002 * 109.46924 * 184.99885 * 4 2 1 29 29 H 1.08004 * 120.65939 * 0.02562 * 7 6 5 30 30 H 0.97002 * 120.00843 * 180.02562 * 12 11 9 31 31 H 1.07994 * 120.45009 * 180.25490 * 17 8 7 32 32 H 1.08001 * 119.37946 * 179.74306 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.6619 -2.0982 1.1920 6 6 2.0399 -2.8846 2.2314 7 6 1.7019 -4.2278 2.2322 8 6 2.0990 -5.0242 3.3240 9 6 1.7749 -6.4009 3.3781 10 1 1.5663 -6.9428 2.4675 11 6 1.7246 -7.0603 4.6124 12 7 1.6440 -6.3699 5.7196 13 14 1.7728 -8.9266 4.6769 14 1 3.0351 -9.4107 4.0626 15 1 1.7072 -9.3748 6.0911 16 1 0.6147 -9.4778 3.9282 17 6 2.8347 -4.4091 4.3597 18 6 3.1210 -3.0766 4.2705 19 7 2.7274 -2.3593 3.2334 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 3.1300 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.6053 -0.2618 2.1370 28 1 3.1263 -0.6444 1.2952 29 1 1.1412 -4.6551 1.4140 30 1 1.6095 -6.8266 6.5747 31 1 3.1627 -4.9834 5.2135 32 1 3.6800 -2.6006 5.0625 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232306.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:15 Heat of formation + Delta-G solvation = -52.553950 kcal Electronic energy + Delta-G solvation = -14491.741217 eV Core-core repulsion = 12029.827536 eV Total energy + Delta-G solvation = -2461.913681 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.89252 -38.86774 -36.30183 -35.68325 -32.69651 -30.77294 -28.21550 -28.01478 -27.03426 -23.62762 -23.09887 -21.09077 -19.93022 -18.17402 -17.15502 -16.98856 -16.82787 -16.05301 -15.47328 -15.12081 -14.96615 -14.33506 -14.13215 -13.72359 -13.42008 -13.21999 -12.98526 -12.91925 -12.80424 -12.20799 -12.06757 -11.95332 -11.87575 -11.60046 -11.47889 -11.25703 -10.09787 -10.05564 -9.07619 -8.75208 -6.65106 0.83474 0.97679 1.39495 1.52043 1.57699 2.16788 2.41066 2.69980 3.64338 3.84878 3.90395 3.95054 4.20557 4.51089 4.59830 4.67770 4.78992 4.84443 4.86670 4.93556 4.97776 5.01748 5.13860 5.17471 5.26728 5.39227 5.42520 5.51425 5.72563 5.93806 6.34862 6.63946 6.74986 6.84024 7.53774 8.19090 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.060926 B = 0.005781 C = 0.005461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.466584 B = 4842.469131 C = 5126.356436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 C -0.137 4.137 4 C 0.078 3.922 5 O -0.326 6.326 6 C 0.315 3.685 7 C -0.323 4.323 8 C 0.125 3.875 9 C -0.481 4.481 10 H 0.084 0.916 11 C 0.040 3.960 12 N -0.806 5.806 13 Si 0.993 3.007 14 H -0.258 1.258 15 H -0.262 1.262 16 H -0.258 1.258 17 C -0.255 4.255 18 C 0.113 3.887 19 N -0.630 5.630 20 H 0.078 0.922 21 H 0.039 0.961 22 H 0.053 0.947 23 H 0.077 0.923 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.105 0.895 30 H 0.296 0.704 31 H 0.122 0.878 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 6.185 -4.956 7.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.194 4.194 4 C 0.003 3.997 5 O -0.235 6.235 6 C 0.139 3.861 7 C -0.347 4.347 8 C 0.117 3.883 9 C -0.511 4.511 10 H 0.102 0.898 11 C -0.178 4.178 12 N -0.430 5.430 13 Si 0.812 3.188 14 H -0.182 1.182 15 H -0.186 1.186 16 H -0.182 1.182 17 C -0.278 4.278 18 C -0.035 4.035 19 N -0.360 5.360 20 H 0.097 0.903 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.140 0.860 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.202 7.038 -4.947 8.605 hybrid contribution -0.146 -1.507 0.452 1.580 sum 0.055 5.532 -4.495 7.128 Atomic orbital electron populations 1.21787 0.94294 1.01452 1.02487 1.21214 0.97089 0.96928 0.95966 1.21727 1.01355 0.93103 1.03209 1.22690 0.99170 0.78701 0.99154 1.86124 1.74501 1.22411 1.40508 1.19585 0.91554 0.88304 0.86656 1.20928 1.16517 0.91819 1.05403 1.17990 0.86849 0.93685 0.89764 1.19912 1.42258 0.93970 0.94915 0.89756 1.26919 0.90439 1.06614 0.93862 1.69802 1.32055 1.41007 1.00151 0.85093 0.80298 0.74528 0.78878 1.18201 1.18609 1.18205 1.21878 1.06622 0.96128 1.03133 1.21830 0.96313 0.91334 0.94001 1.67063 1.23205 1.40598 1.05147 0.90311 0.94128 0.92805 0.90507 0.92160 0.89923 0.92207 0.93395 0.93157 0.87656 0.89251 0.85974 0.82879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.09 71.98 0.65 -2.96 16 2 C -0.09 -2.48 3.16 -10.79 -0.03 -2.51 16 3 C -0.14 -2.70 9.19 71.98 0.66 -2.03 16 4 C 0.08 2.81 4.69 71.98 0.34 3.15 16 5 O -0.33 -14.64 9.65 -90.30 -0.87 -15.51 16 6 C 0.32 16.13 7.48 84.67 0.63 16.76 16 7 C -0.32 -17.49 9.84 22.97 0.23 -17.26 16 8 C 0.12 6.96 5.61 -21.11 -0.12 6.84 16 9 C -0.48 -25.71 9.12 23.52 0.21 -25.50 16 10 H 0.08 4.32 7.90 -2.91 -0.02 4.30 16 11 C 0.04 1.95 5.20 85.29 0.44 2.39 16 12 N -0.81 -40.31 10.91 21.84 0.24 -40.07 16 13 Si 0.99 36.18 29.59 68.60 2.03 38.21 16 14 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 15 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 16 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 17 C -0.25 -13.53 8.75 22.60 0.20 -13.33 16 18 C 0.11 5.54 11.10 84.27 0.94 6.47 16 19 N -0.63 -31.51 9.19 -310.11 -2.85 -34.36 16 20 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.04 1.20 7.82 -2.39 -0.02 1.18 16 22 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 28 H 0.05 1.83 8.10 -2.39 -0.02 1.81 16 29 H 0.11 5.50 8.06 -2.91 -0.02 5.47 16 30 H 0.30 13.17 8.29 -92.71 -0.77 12.40 16 31 H 0.12 6.50 6.18 -2.91 -0.02 6.48 16 32 H 0.15 6.33 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -60.56 275.26 3.79 -56.77 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 1.09 Total: 22.95 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 4.15 Total: -27.98 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -2.61 Total: -74.43 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.87 Total: -15.51 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Total: -60.56 3.79 -56.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232306.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.214 kcal (2) G-P(sol) polarization free energy of solvation -60.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds