Wall clock time and date at job start Mon Mar 30 2020 04:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 115.55917 * 2 1 4 4 C 1.53001 * 117.49869 * 214.31803 * 2 1 3 5 5 C 1.52998 * 117.50228 * 145.69449 * 2 1 3 6 6 H 1.09003 * 117.51650 * 0.02562 * 5 2 1 7 7 C 1.50702 * 117.50044 * 214.98255 * 5 2 1 8 8 C 1.34509 * 125.78902 * 119.98173 * 7 5 2 9 9 C 1.41380 * 106.83918 * 179.75045 * 8 7 5 10 10 C 1.34517 * 106.84201 * 0.37408 * 9 8 7 11 11 C 1.50698 * 125.79249 * 179.89131 * 10 9 8 12 12 N 1.46501 * 109.47342 * 89.68831 * 11 10 9 13 13 C 1.36932 * 119.99845 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00437 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00372 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99955 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99982 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99472 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00079 * 17 15 13 21 21 O 1.34302 * 108.41866 * 359.62461 * 10 9 8 22 22 H 1.09001 * 109.47179 * 274.30230 * 1 2 3 23 23 H 1.08996 * 109.47280 * 34.31115 * 1 2 3 24 24 H 1.09004 * 109.46844 * 154.30936 * 1 2 3 25 25 H 1.09007 * 117.49660 * 145.02422 * 4 2 1 26 26 H 1.08990 * 117.52239 * 359.97438 * 4 2 1 27 27 H 1.07997 * 126.58348 * 0.02562 * 8 7 5 28 28 H 1.08006 * 126.58202 * 180.23651 * 9 8 7 29 29 H 1.09001 * 109.47157 * 329.68800 * 11 10 9 30 30 H 1.09000 * 109.46923 * 209.69196 * 11 10 9 31 31 H 0.97000 * 119.99725 * 0.02562 * 12 11 10 32 32 H 0.96993 * 120.00251 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6116 -1.8590 1.2679 7 6 3.5293 -0.7812 1.4608 8 6 3.7639 -0.8884 2.7809 9 6 5.0981 -0.4726 2.9949 10 6 5.5964 -0.1282 1.7939 11 6 6.9904 0.3805 1.5310 12 7 7.8809 -0.7515 1.2628 13 6 9.2057 -0.5319 0.9954 14 1 9.5944 0.4757 0.9825 15 6 10.0496 -1.6045 0.7418 16 7 11.3230 -1.3935 0.4842 17 14 9.3777 -3.3473 0.7647 18 1 9.4906 -3.9033 2.1371 19 1 7.9512 -3.3334 0.3521 20 1 10.1572 -4.1907 -0.1767 21 8 4.6428 -0.3202 0.8679 22 1 -0.3633 0.0771 1.0248 23 1 -0.3633 0.8488 -0.5793 24 1 -0.3633 -0.9261 -0.4455 25 1 3.1716 -0.8750 -1.2684 26 1 1.6116 -1.8587 -1.2683 27 1 3.0681 -1.2311 3.5325 28 1 5.6169 -0.4362 3.9415 29 1 7.3488 0.9258 2.4041 30 1 6.9776 1.0454 0.6674 31 1 7.5319 -1.6565 1.2747 32 1 11.9126 -2.1429 0.3066 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379563487.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:17 Heat of formation + Delta-G solvation = 47.703462 kcal Electronic energy + Delta-G solvation = -14363.371246 eV Core-core repulsion = 11905.805052 eV Total energy + Delta-G solvation = -2457.566194 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.32734 -37.84548 -35.00417 -32.72630 -31.70575 -29.95548 -28.39084 -25.74678 -22.77383 -21.69939 -21.42646 -20.84107 -19.68716 -17.94256 -16.63999 -15.80352 -14.97339 -14.55031 -14.42406 -13.71858 -13.58638 -13.25954 -12.97151 -12.61297 -12.49428 -12.28884 -11.91049 -11.73107 -11.62948 -11.17144 -10.86743 -10.65078 -10.22642 -10.17596 -9.63392 -9.55288 -8.96628 -7.95740 -7.30817 -5.80095 -3.17376 1.89796 2.82614 3.11592 3.38509 3.43695 3.45465 3.73106 4.37553 4.58070 4.64849 4.69251 5.05507 5.10262 5.31026 5.36948 5.45289 5.50619 5.52523 5.62273 5.62901 5.78159 5.89509 6.05527 6.07851 6.12377 6.26004 6.43812 6.46759 6.82706 7.52659 7.92544 8.37959 9.15043 9.87418 10.06790 11.37661 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042019 B = 0.006035 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.201767 B = 4638.142996 C = 4807.561980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.143 4.143 3 H 0.107 0.893 4 C -0.167 4.167 5 C -0.076 4.076 6 H 0.130 0.870 7 C 0.004 3.996 8 C -0.204 4.204 9 C -0.207 4.207 10 C -0.001 4.001 11 C 0.232 3.768 12 N -0.751 5.751 13 C -0.250 4.250 14 H 0.094 0.906 15 C 0.010 3.990 16 N -0.931 5.931 17 Si 0.883 3.117 18 H -0.282 1.282 19 H -0.277 1.277 20 H -0.289 1.289 21 O -0.169 6.169 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.365 0.635 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.286 1.333 1.429 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 H 0.125 0.875 4 C -0.204 4.204 5 C -0.094 4.094 6 H 0.148 0.852 7 C -0.046 4.046 8 C -0.223 4.223 9 C -0.227 4.227 10 C -0.051 4.051 11 C 0.106 3.894 12 N -0.398 5.398 13 C -0.379 4.379 14 H 0.112 0.888 15 C -0.186 4.186 16 N -0.578 5.578 17 Si 0.713 3.287 18 H -0.209 1.209 19 H -0.203 1.203 20 H -0.215 1.215 21 O -0.065 6.065 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.161 0.839 28 H 0.166 0.834 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.198 0.802 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.019 1.516 1.070 21.101 hybrid contribution -0.295 -1.418 0.275 1.474 sum -21.314 0.098 1.345 21.356 Atomic orbital electron populations 1.21376 0.92317 1.02141 1.02031 1.22505 0.95264 0.94920 1.03419 0.87487 1.23196 1.03204 1.01169 0.92790 1.20510 0.92052 1.02692 0.94108 0.85178 1.21271 0.87507 1.04170 0.91658 1.21415 0.97495 1.08205 0.95219 1.21598 0.95306 1.06943 0.98821 1.23049 0.91726 1.03571 0.86794 1.19168 0.79418 0.90822 1.00031 1.42721 1.06950 1.03052 1.87072 1.19029 0.82470 0.95478 1.40950 0.88846 1.24633 0.95318 0.97422 1.01256 1.69694 1.03392 1.30560 1.54170 0.86566 0.78277 0.86097 0.77800 1.20860 1.20285 1.21515 1.83956 1.19585 1.65121 1.37878 0.92013 0.91859 0.92374 0.87934 0.88068 0.83888 0.83410 0.92050 0.93783 0.80217 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.19 37.16 0.38 -0.54 16 2 C -0.14 -1.46 6.11 -90.62 -0.55 -2.01 16 3 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 4 C -0.17 -1.83 9.81 -26.73 -0.26 -2.09 16 5 C -0.08 -0.89 5.96 -91.77 -0.55 -1.43 16 6 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 7 C 0.00 0.07 6.80 -35.63 -0.24 -0.18 16 8 C -0.20 -3.07 10.81 -39.71 -0.43 -3.50 16 9 C -0.21 -3.48 10.81 -39.70 -0.43 -3.91 16 10 C 0.00 -0.02 6.69 -35.62 -0.24 -0.26 16 11 C 0.23 4.78 6.79 -5.19 -0.04 4.74 16 12 N -0.75 -18.79 5.40 -61.09 -0.33 -19.12 16 13 C -0.25 -7.22 10.47 -15.06 -0.16 -7.37 16 14 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 15 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 16 N -0.93 -29.44 13.97 55.49 0.78 -28.66 16 17 Si 0.88 22.72 27.73 -169.99 -4.71 18.00 16 18 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.28 -6.90 6.52 56.52 0.37 -6.54 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 O -0.17 -3.11 10.36 5.71 0.06 -3.05 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 25 H 0.10 1.31 7.96 -51.93 -0.41 0.89 16 26 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 27 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.15 2.26 8.06 -52.48 -0.42 1.83 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.36 9.15 5.52 -40.82 -0.23 8.93 16 32 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 278.90 15.07 4.20 4.20 Total: -1.00 -32.07 278.90 -7.06 -39.13 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.44 Total: 5.84 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.61 Total: -16.34 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.45 Total: -47.78 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: 0.06 Total: -3.05 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.71 Total: 18.00 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.07 -7.06 -39.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379563487.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.832 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds