Wall clock time and date at job start Mon Mar 30 2020 04:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 115.55917 * 2 1 4 4 C 1.53001 * 117.49869 * 214.31803 * 2 1 3 5 5 C 1.52998 * 117.50228 * 145.69449 * 2 1 3 6 6 H 1.09003 * 117.51650 * 0.02562 * 5 2 1 7 7 C 1.50702 * 117.50044 * 214.98255 * 5 2 1 8 8 C 1.34509 * 125.78902 * 119.98173 * 7 5 2 9 9 C 1.41380 * 106.83918 * 179.75045 * 8 7 5 10 10 C 1.34517 * 106.84201 * 0.37408 * 9 8 7 11 11 C 1.50698 * 125.79249 * 179.89131 * 10 9 8 12 12 N 1.46501 * 109.47342 * 89.68831 * 11 10 9 13 13 C 1.36932 * 119.99845 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00437 * 0.02562 * 13 12 11 15 15 C 1.38811 * 119.99901 * 179.97438 * 13 12 11 16 16 N 1.31620 * 120.00372 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99955 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.46845 * 269.99982 * 17 15 13 19 19 H 1.48503 * 109.47399 * 29.99472 * 17 15 13 20 20 H 1.48498 * 109.47295 * 150.00079 * 17 15 13 21 21 O 1.34302 * 108.41866 * 359.62461 * 10 9 8 22 22 H 1.09001 * 109.47179 * 274.30230 * 1 2 3 23 23 H 1.08996 * 109.47280 * 34.31115 * 1 2 3 24 24 H 1.09004 * 109.46844 * 154.30936 * 1 2 3 25 25 H 1.09007 * 117.49660 * 145.02422 * 4 2 1 26 26 H 1.08990 * 117.52239 * 359.97438 * 4 2 1 27 27 H 1.07997 * 126.58348 * 0.02562 * 8 7 5 28 28 H 1.08006 * 126.58202 * 180.23651 * 9 8 7 29 29 H 1.09001 * 109.47157 * 329.68800 * 11 10 9 30 30 H 1.09000 * 109.46923 * 209.69196 * 11 10 9 31 31 H 0.97000 * 119.99725 * 0.02562 * 12 11 10 32 32 H 0.96993 * 120.00251 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2364 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7649 6 1 1.6116 -1.8590 1.2679 7 6 3.5293 -0.7812 1.4608 8 6 3.7639 -0.8884 2.7809 9 6 5.0981 -0.4726 2.9949 10 6 5.5964 -0.1282 1.7939 11 6 6.9904 0.3805 1.5310 12 7 7.8809 -0.7515 1.2628 13 6 9.2057 -0.5319 0.9954 14 1 9.5944 0.4757 0.9825 15 6 10.0496 -1.6045 0.7418 16 7 11.3230 -1.3935 0.4842 17 14 9.3777 -3.3473 0.7647 18 1 9.4906 -3.9033 2.1371 19 1 7.9512 -3.3334 0.3521 20 1 10.1572 -4.1907 -0.1767 21 8 4.6428 -0.3202 0.8679 22 1 -0.3633 0.0771 1.0248 23 1 -0.3633 0.8488 -0.5793 24 1 -0.3633 -0.9261 -0.4455 25 1 3.1716 -0.8750 -1.2684 26 1 1.6116 -1.8587 -1.2683 27 1 3.0681 -1.2311 3.5325 28 1 5.6169 -0.4362 3.9415 29 1 7.3488 0.9258 2.4041 30 1 6.9776 1.0454 0.6674 31 1 7.5319 -1.6565 1.2747 32 1 11.9126 -2.1429 0.3066 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379563487.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:17 Heat of formation + Delta-G solvation = 28.123828 kcal Electronic energy + Delta-G solvation = -14364.220282 eV Core-core repulsion = 11905.805052 eV Total energy + Delta-G solvation = -2458.415230 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.61027 -38.70905 -36.93602 -34.14026 -33.64909 -31.34477 -29.39285 -27.26658 -24.50760 -23.05885 -22.72777 -21.68716 -20.91260 -19.99548 -17.84923 -17.24069 -16.48624 -16.34804 -15.56441 -15.24715 -14.90337 -14.62906 -14.28077 -13.93175 -13.76855 -13.68333 -13.14714 -13.01682 -12.80147 -12.73369 -12.38098 -12.19610 -11.88088 -11.56471 -11.11266 -11.02911 -10.79420 -9.43806 -9.20026 -8.09173 -5.45160 0.62221 1.34285 1.36040 1.43592 1.58563 1.88736 2.42525 2.86294 3.22051 3.42126 3.68599 3.76228 3.88399 3.92602 4.13146 4.25803 4.38446 4.56659 4.67104 4.72724 4.85930 4.88229 4.96186 5.04424 5.12499 5.15437 5.19828 5.40864 5.60120 5.66114 6.13598 6.23107 6.96619 7.69605 7.90342 9.11604 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042019 B = 0.006035 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.201767 B = 4638.142996 C = 4807.561980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.132 4.132 3 H 0.091 0.909 4 C -0.172 4.172 5 C -0.087 4.087 6 H 0.159 0.841 7 C 0.004 3.996 8 C -0.209 4.209 9 C -0.196 4.196 10 C -0.038 4.038 11 C 0.233 3.767 12 N -0.755 5.755 13 C -0.243 4.243 14 H 0.067 0.933 15 C -0.053 4.053 16 N -0.977 5.977 17 Si 0.952 3.048 18 H -0.273 1.273 19 H -0.265 1.265 20 H -0.289 1.289 21 O -0.191 6.191 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.126 0.874 27 H 0.176 0.824 28 H 0.162 0.838 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.365 0.635 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.346 0.049 2.123 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.150 4.150 3 H 0.109 0.891 4 C -0.208 4.208 5 C -0.105 4.105 6 H 0.176 0.824 7 C -0.046 4.046 8 C -0.228 4.228 9 C -0.216 4.216 10 C -0.087 4.087 11 C 0.108 3.892 12 N -0.402 5.402 13 C -0.373 4.373 14 H 0.085 0.915 15 C -0.245 4.245 16 N -0.626 5.626 17 Si 0.779 3.221 18 H -0.199 1.199 19 H -0.190 1.190 20 H -0.215 1.215 21 O -0.089 6.089 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.095 0.905 26 H 0.144 0.856 27 H 0.194 0.806 28 H 0.179 0.821 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.198 0.802 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.117 0.258 1.778 24.184 hybrid contribution 0.583 -0.903 0.056 1.076 sum -23.534 -0.645 1.834 23.614 Atomic orbital electron populations 1.21395 0.89829 1.03233 1.02963 1.22555 0.96956 0.93674 1.01816 0.89097 1.23244 1.02788 1.02415 0.92393 1.20831 0.90890 1.04294 0.94437 0.82365 1.22120 0.87680 1.02379 0.92443 1.21784 0.97167 1.08032 0.95778 1.21908 0.96173 1.04998 0.98526 1.22661 0.91392 1.06914 0.87772 1.19146 0.80432 0.89548 1.00122 1.42744 1.06080 1.04352 1.87003 1.19041 0.84274 0.94403 1.39625 0.91528 1.25418 0.95577 1.01844 1.01699 1.69854 1.04908 1.31850 1.56022 0.85462 0.77988 0.80571 0.78080 1.19851 1.19047 1.21491 1.83928 1.20505 1.65871 1.38568 0.91075 0.91123 0.91036 0.90483 0.85590 0.80616 0.82078 0.90842 0.94264 0.80173 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 10.19 71.98 0.73 -0.63 16 2 C -0.13 -2.39 6.11 -10.79 -0.07 -2.45 16 3 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 4 C -0.17 -3.44 9.81 30.59 0.30 -3.14 16 5 C -0.09 -1.80 5.96 -11.54 -0.07 -1.87 16 6 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 7 C 0.00 0.11 6.80 24.83 0.17 0.28 16 8 C -0.21 -5.70 10.81 22.19 0.24 -5.46 16 9 C -0.20 -6.25 10.81 22.19 0.24 -6.01 16 10 C -0.04 -1.40 6.69 24.83 0.17 -1.23 16 11 C 0.23 9.66 6.79 85.63 0.58 10.25 16 12 N -0.76 -37.82 5.40 -347.18 -1.87 -39.69 16 13 C -0.24 -14.29 10.47 84.03 0.88 -13.41 16 14 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 15 C -0.05 -3.19 5.50 84.86 0.47 -2.73 16 16 N -0.98 -63.05 13.97 21.65 0.30 -62.75 16 17 Si 0.95 47.04 27.73 68.60 1.90 48.94 16 18 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.27 -12.45 6.52 99.48 0.65 -11.80 16 20 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 21 O -0.19 -6.96 10.36 -2.49 -0.03 -6.98 16 22 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 23 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 0.67 7.90 -2.38 -0.02 0.65 16 25 H 0.08 1.95 7.96 -2.38 -0.02 1.93 16 26 H 0.13 1.86 8.05 -2.39 -0.02 1.84 16 27 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 29 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.37 18.02 5.52 -92.71 -0.51 17.51 16 32 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -69.41 278.90 4.48 -64.92 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.54 Total: 21.96 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 3.64 Total: -26.40 kcal Atomic # 7 Polarization: -100.87 SS G_CDS: -1.57 Total: -102.44 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.03 Total: -6.98 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.90 Total: 48.94 kcal Total: -69.41 4.48 -64.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379563487.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.048 kcal (2) G-P(sol) polarization free energy of solvation -69.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds