Wall clock time and date at job start Mon Mar 30 2020 02:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50690 * 109.47213 * 2 1 4 4 C 1.38382 * 119.85340 * 264.99614 * 3 2 1 5 5 C 1.38559 * 120.70940 * 180.02562 * 4 3 2 6 6 C 1.38190 * 120.38594 * 359.95433 * 5 4 3 7 7 O 1.35699 * 120.15934 * 180.02562 * 6 5 4 8 8 C 1.42904 * 116.99821 * 0.02562 * 7 6 5 9 9 C 1.41263 * 119.68085 * 0.29986 * 6 5 4 10 10 C 1.40912 * 120.33813 * 179.72087 * 9 6 5 11 11 H 1.07995 * 119.99565 * 141.22913 * 10 9 6 12 12 C 1.39908 * 120.00046 * 321.22759 * 10 9 6 13 13 N 1.30931 * 120.00084 * 339.63329 * 12 10 9 14 14 Si 1.86793 * 119.99889 * 159.63115 * 12 10 9 15 15 H 1.48506 * 109.46951 * 60.00306 * 14 12 10 16 16 H 1.48492 * 109.47253 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47320 * 300.00344 * 14 12 10 18 18 C 1.38497 * 119.84907 * 85.02295 * 3 2 1 19 19 N 1.38886 * 120.20314 * 0.02562 * 18 3 2 20 20 H 1.08995 * 109.47357 * 300.00286 * 1 2 3 21 21 H 1.09006 * 109.46870 * 60.00334 * 1 2 3 22 22 H 1.09001 * 109.46952 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47011 * 239.99876 * 2 1 3 24 24 H 1.09000 * 109.47221 * 120.00300 * 2 1 3 25 25 H 1.08001 * 119.64002 * 0.02562 * 4 3 2 26 26 H 1.08001 * 119.80792 * 179.97438 * 5 4 3 27 27 H 1.08996 * 109.47280 * 299.99543 * 8 7 6 28 28 H 1.09001 * 109.46900 * 179.97438 * 8 7 6 29 29 H 1.09000 * 109.46977 * 60.00263 * 8 7 6 30 30 H 0.96992 * 120.00061 * 179.97438 * 13 12 10 31 31 H 0.97006 * 119.99585 * 0.02562 * 19 18 3 32 32 H 0.96997 * 120.00654 * 179.97438 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3606 2.0353 -1.1956 5 6 2.8247 3.3407 -1.2162 6 6 2.9660 4.0509 -0.0392 7 8 3.4204 5.3293 -0.0648 8 6 3.7342 5.8808 -1.3452 9 6 2.6408 3.4377 1.1911 10 6 2.7853 4.1471 2.4001 11 1 2.0521 4.0320 3.1846 12 6 3.8786 5.0005 2.5840 13 7 4.9522 4.8569 1.8485 14 14 3.8065 6.3448 3.8789 15 1 3.5998 5.7332 5.2163 16 1 5.0821 7.1051 3.8747 17 1 2.6806 7.2644 3.5758 18 6 2.1638 2.1054 1.1967 19 7 1.8348 1.4863 2.3956 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 2.2540 1.4914 -2.1226 26 1 3.0770 3.8060 -2.1576 27 1 4.5142 5.2833 -1.8169 28 1 4.0847 6.9057 -1.2233 29 1 2.8424 5.8744 -1.9720 30 1 5.7100 5.4488 1.9757 31 1 1.5121 0.5715 2.3965 32 1 1.9283 1.9683 3.2321 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575717824.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:50 Heat of formation + Delta-G solvation = -23.330114 kcal Electronic energy + Delta-G solvation = -15345.328693 eV Core-core repulsion = 12884.682252 eV Total energy + Delta-G solvation = -2460.646441 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.64374 -36.71467 -33.68717 -32.65059 -32.07282 -28.90347 -26.84970 -26.20975 -24.68549 -22.59234 -20.51083 -19.47162 -17.05457 -16.40953 -16.16007 -14.79924 -14.25893 -14.10093 -13.98980 -13.88493 -13.20910 -12.72282 -12.36280 -11.92901 -11.72153 -11.50969 -11.28769 -11.02185 -10.96839 -10.49171 -10.39019 -10.26089 -10.04430 -9.81500 -9.26517 -8.86963 -8.69498 -6.68634 -6.39356 -6.15514 -3.93419 2.96104 3.17082 3.24312 3.26335 3.33854 4.22035 4.75626 4.92539 5.37176 5.62226 5.67024 5.70893 6.01999 6.06024 6.12240 6.23142 6.30025 6.33081 6.46391 6.51957 6.60515 6.75972 7.04020 7.30488 7.48754 7.57655 7.84599 8.01390 8.12214 8.44257 8.75530 8.96996 9.05638 9.25160 9.39239 10.60546 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029597 B = 0.011344 C = 0.008730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.799145 B = 2467.633949 C = 3206.412815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.181 4.181 4 C -0.144 4.144 5 C -0.234 4.234 6 C 0.097 3.903 7 O -0.277 6.277 8 C 0.035 3.965 9 C 0.046 3.954 10 C -0.480 4.480 11 H 0.068 0.932 12 C 0.093 3.907 13 N -0.784 5.784 14 Si 0.895 3.105 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.161 3.839 19 N -0.877 5.877 20 H 0.053 0.947 21 H 0.051 0.949 22 H 0.041 0.959 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.037 0.963 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.272 0.728 31 H 0.378 0.622 32 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 -2.839 -2.276 5.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.186 4.186 4 C -0.164 4.164 5 C -0.255 4.255 6 C 0.050 3.950 7 O -0.189 6.189 8 C -0.062 4.062 9 C 0.041 3.959 10 C -0.511 4.511 11 H 0.086 0.914 12 C -0.125 4.125 13 N -0.410 5.410 14 Si 0.721 3.279 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.194 1.194 18 C 0.058 3.942 19 N -0.419 5.419 20 H 0.072 0.928 21 H 0.070 0.930 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.205 0.795 32 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.136 -2.578 -2.209 4.622 hybrid contribution 0.146 0.556 0.450 0.730 sum -2.990 -2.022 -1.759 4.015 Atomic orbital electron populations 1.21755 0.96517 0.99775 1.02003 1.20130 0.94688 0.94751 1.00450 1.18698 1.11897 0.95576 0.92408 1.19777 1.06695 0.94744 0.95213 1.20526 1.12289 0.96784 0.95863 1.18881 0.99886 0.83562 0.92717 1.86208 1.79884 1.26028 1.26807 1.22671 0.98545 0.97959 0.87016 1.16346 0.98446 0.89599 0.91536 1.18665 1.07607 1.24271 1.00551 0.91378 1.25467 0.94338 0.96725 0.95951 1.69761 1.02582 1.33236 1.35438 0.86618 0.77952 0.82034 0.81317 1.19857 1.20963 1.19405 1.17379 1.00741 0.90977 0.85090 1.41978 1.77634 1.15919 1.06411 0.92832 0.93025 0.94027 0.92804 0.93005 0.89332 0.88965 0.94420 0.90752 0.94917 0.91724 0.79469 0.77850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.89 37.16 0.37 -1.83 16 2 C -0.06 -1.09 5.48 -27.89 -0.15 -1.25 16 3 C -0.18 -3.97 5.14 -104.48 -0.54 -4.51 16 4 C -0.14 -3.24 9.65 -39.41 -0.38 -3.62 16 5 C -0.23 -5.58 9.02 -39.48 -0.36 -5.93 16 6 C 0.10 2.55 6.17 -38.45 -0.24 2.31 16 7 O -0.28 -7.10 7.39 -18.80 -0.14 -7.24 16 8 C 0.03 0.70 9.81 101.05 0.99 1.69 16 9 C 0.05 1.24 5.38 -106.49 -0.57 0.67 16 10 C -0.48 -12.95 8.02 -37.95 -0.30 -13.26 16 11 H 0.07 1.76 7.22 -52.49 -0.38 1.38 16 12 C 0.09 2.45 4.40 -17.31 -0.08 2.37 16 13 N -0.78 -21.48 11.26 55.55 0.63 -20.85 16 14 Si 0.89 20.04 29.61 -169.99 -5.03 15.01 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 C 0.16 3.84 6.76 -83.32 -0.56 3.27 16 19 N -0.88 -17.65 8.88 32.70 0.29 -17.36 16 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.88 8.05 -51.93 -0.42 0.46 16 24 H 0.05 0.86 6.79 -51.93 -0.35 0.50 16 25 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 26 H 0.09 1.98 6.27 -52.49 -0.33 1.65 16 27 H 0.04 0.73 7.66 -51.93 -0.40 0.33 16 28 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.03 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.27 6.98 8.30 -40.82 -0.34 6.64 16 31 H 0.38 6.46 6.90 -40.82 -0.28 6.18 16 32 H 0.39 7.86 7.31 -40.82 -0.30 7.56 16 LS Contribution 264.98 15.07 3.99 3.99 Total: -1.00 -29.42 264.98 -6.19 -35.61 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.10 Total: 10.92 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.82 Total: -20.09 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.92 Total: -38.21 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.14 Total: -7.24 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.42 -6.19 -35.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717824.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.281 kcal (2) G-P(sol) polarization free energy of solvation -29.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds