Wall clock time and date at job start Mon Mar 30 2020 02:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46961 * 2 1 4 4 C 1.36431 * 119.97835 * 264.99559 * 3 2 1 5 5 C 1.38879 * 120.63715 * 179.72463 * 4 3 2 6 6 C 1.38532 * 120.57348 * 0.23246 * 5 4 3 7 7 O 1.36024 * 120.03111 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00099 * 0.02562 * 7 6 5 9 9 C 1.39185 * 119.93820 * 0.02562 * 6 5 4 10 10 N 1.38979 * 120.31640 * 180.02562 * 9 6 5 11 11 C 1.40792 * 119.97837 * 85.22625 * 3 2 1 12 12 C 1.41071 * 120.28239 * 0.02881 * 11 3 2 13 13 H 1.07999 * 119.99879 * 309.15321 * 12 11 3 14 14 C 1.39908 * 120.00142 * 129.15329 * 12 11 3 15 15 N 1.30888 * 120.00035 * 167.77981 * 14 12 11 16 16 Si 1.86805 * 119.99859 * 347.78666 * 14 12 11 17 17 H 1.48497 * 109.47308 * 94.39421 * 16 14 12 18 18 H 1.48500 * 109.46684 * 214.39049 * 16 14 12 19 19 H 1.48498 * 109.47134 * 334.38849 * 16 14 12 20 20 H 1.09006 * 109.47115 * 300.00139 * 1 2 3 21 21 H 1.09002 * 109.46867 * 59.99646 * 1 2 3 22 22 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47226 * 240.00678 * 2 1 3 24 24 H 1.09000 * 109.47302 * 119.99719 * 2 1 3 25 25 H 1.07994 * 119.68383 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.71106 * 180.26266 * 5 4 3 27 27 H 1.08998 * 109.47362 * 180.02562 * 8 7 6 28 28 H 1.08996 * 109.46842 * 299.99723 * 8 7 6 29 29 H 1.08997 * 109.47467 * 59.99623 * 8 7 6 30 30 H 0.96999 * 119.99313 * 351.24495 * 10 9 6 31 31 H 0.96999 * 120.00192 * 171.24202 * 10 9 6 32 32 H 0.97000 * 120.00005 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3567 2.0292 -1.1773 5 6 2.8155 3.3400 -1.1937 6 6 2.9565 4.0520 -0.0138 7 8 3.4074 5.3350 -0.0426 8 6 3.7160 5.8855 -1.3247 9 6 2.6376 3.4529 1.2014 10 7 2.7756 4.1601 2.3898 11 6 2.1711 2.1180 1.2153 12 6 1.8423 1.4920 2.4360 13 1 0.8871 1.0014 2.5512 14 6 2.7536 1.5067 3.4975 15 7 2.3693 1.1444 4.6951 16 14 4.5188 2.0437 3.2056 17 1 4.6546 3.4892 3.5176 18 1 5.4259 1.2607 4.0827 19 1 4.8793 1.8081 1.7844 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.2512 1.4880 -2.1058 26 1 3.0640 3.8084 -2.1346 27 1 4.0641 6.9115 -1.2053 28 1 4.4971 5.2900 -1.7973 29 1 2.8229 5.8748 -1.9494 30 1 3.2128 5.0260 2.3908 31 1 2.4348 3.7878 3.2182 32 1 3.0011 1.1549 5.4311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575717929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:03 Heat of formation + Delta-G solvation = -23.518967 kcal Electronic energy + Delta-G solvation = -15426.620751 eV Core-core repulsion = 12965.966121 eV Total energy + Delta-G solvation = -2460.654630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.21152 -37.03400 -34.24891 -32.98883 -31.71828 -29.20444 -27.79646 -26.39745 -24.76828 -22.46321 -20.63373 -19.50018 -17.77052 -16.76868 -15.68357 -15.35714 -15.03519 -14.61376 -14.15478 -13.56013 -13.29923 -12.72291 -12.47914 -12.27983 -12.03412 -11.95881 -11.29549 -11.20826 -11.00769 -10.73531 -10.22945 -10.14151 -9.86968 -9.77652 -9.60816 -9.19271 -8.80150 -7.10555 -6.61916 -6.14471 -4.27251 2.58128 2.82807 3.31394 3.32779 3.47041 4.08228 4.20063 4.66831 5.14724 5.32924 5.52222 5.58677 5.75981 5.88781 5.95845 6.09961 6.21981 6.34158 6.53693 6.61612 6.74978 6.87033 7.04417 7.13795 7.27221 7.36705 7.53326 7.79829 8.00785 8.26237 8.47322 8.67339 8.92407 9.00581 9.08729 10.42297 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021577 B = 0.015561 C = 0.010245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.346263 B = 1798.934604 C = 2732.414200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.061 4.061 3 C -0.138 4.138 4 C -0.117 4.117 5 C -0.243 4.243 6 C 0.050 3.950 7 O -0.332 6.332 8 C 0.039 3.961 9 C 0.121 3.879 10 N -0.874 5.874 11 C 0.060 3.940 12 C -0.469 4.469 13 H 0.091 0.909 14 C 0.079 3.921 15 N -0.841 5.841 16 Si 0.907 3.093 17 H -0.263 1.263 18 H -0.303 1.303 19 H -0.259 1.259 20 H 0.059 0.941 21 H 0.041 0.959 22 H 0.040 0.960 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.385 0.615 31 H 0.400 0.600 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.736 3.950 -7.408 8.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 C -0.141 4.141 4 C -0.137 4.137 5 C -0.263 4.263 6 C 0.002 3.998 7 O -0.247 6.247 8 C -0.057 4.057 9 C 0.018 3.982 10 N -0.420 5.420 11 C 0.055 3.945 12 C -0.502 4.502 13 H 0.109 0.891 14 C -0.133 4.133 15 N -0.470 5.470 16 Si 0.735 3.265 17 H -0.188 1.188 18 H -0.231 1.231 19 H -0.183 1.183 20 H 0.078 0.922 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.120 0.880 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.212 0.788 31 H 0.233 0.767 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.765 3.976 -7.041 8.276 hybrid contribution 0.907 0.439 -0.093 1.012 sum 2.672 4.415 -7.134 8.805 Atomic orbital electron populations 1.21689 0.96551 0.99843 1.01574 1.20156 0.94791 0.93887 1.00977 1.19556 1.06274 0.95528 0.92703 1.19963 1.02846 0.94267 0.96604 1.20402 1.13838 0.96943 0.95072 1.18304 1.04694 0.83442 0.93334 1.85894 1.81916 1.26775 1.30089 1.22739 0.99586 0.97971 0.85387 1.17533 1.05454 0.91398 0.83766 1.42259 1.68800 1.23026 1.07912 1.17131 0.94996 0.88374 0.94032 1.18876 1.04141 1.33451 0.93687 0.89093 1.25865 1.00438 0.93143 0.93895 1.69707 1.36587 1.40390 1.00310 0.86448 0.81740 0.78759 0.79559 1.18803 1.23103 1.18310 0.92178 0.93941 0.94086 0.93679 0.90779 0.88671 0.88033 0.89822 0.93737 0.93630 0.78819 0.76726 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.89 37.16 0.37 -2.19 16 2 C -0.06 -1.23 5.58 -27.88 -0.16 -1.39 16 3 C -0.14 -3.16 5.16 -104.31 -0.54 -3.70 16 4 C -0.12 -2.46 9.58 -40.00 -0.38 -2.85 16 5 C -0.24 -5.05 9.04 -39.24 -0.35 -5.41 16 6 C 0.05 1.12 6.70 -39.12 -0.26 0.85 16 7 O -0.33 -6.57 9.76 -19.82 -0.19 -6.76 16 8 C 0.04 0.57 9.81 101.05 0.99 1.56 16 9 C 0.12 2.91 5.27 -83.06 -0.44 2.47 16 10 N -0.87 -19.57 6.11 32.83 0.20 -19.36 16 11 C 0.06 1.51 4.50 -106.65 -0.48 1.03 16 12 C -0.47 -12.42 7.60 -37.88 -0.29 -12.71 16 13 H 0.09 2.56 7.05 -52.49 -0.37 2.19 16 14 C 0.08 2.09 4.32 -17.33 -0.07 2.01 16 15 N -0.84 -22.73 13.93 55.55 0.77 -21.96 16 16 Si 0.91 21.80 24.30 -169.99 -4.13 17.67 16 17 H -0.26 -5.99 6.34 56.52 0.36 -5.63 16 18 H -0.30 -7.25 7.11 56.52 0.40 -6.84 16 19 H -0.26 -6.63 7.08 56.52 0.40 -6.23 16 20 H 0.06 1.21 7.14 -51.93 -0.37 0.84 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.81 8.04 -51.93 -0.42 0.39 16 24 H 0.07 1.61 7.29 -51.93 -0.38 1.23 16 25 H 0.10 1.75 8.05 -52.49 -0.42 1.33 16 26 H 0.10 1.82 6.26 -52.49 -0.33 1.49 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 29 H 0.05 0.62 7.66 -51.93 -0.40 0.23 16 30 H 0.39 7.81 8.22 -40.82 -0.34 7.48 16 31 H 0.40 9.26 6.03 -40.82 -0.25 9.01 16 32 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 LS Contribution 258.21 15.07 3.89 3.89 Total: -1.00 -28.26 258.21 -5.19 -33.45 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -4.11 Total: 13.39 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.61 Total: -20.31 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.97 Total: -41.32 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.19 Total: -6.76 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.13 Total: 17.67 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.26 -5.19 -33.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.930 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds