Wall clock time and date at job start Mon Mar 30 2020 02:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46961 * 2 1 4 4 C 1.36431 * 119.97835 * 264.99559 * 3 2 1 5 5 C 1.38879 * 120.63715 * 179.72463 * 4 3 2 6 6 C 1.38532 * 120.57348 * 0.23246 * 5 4 3 7 7 O 1.36024 * 120.03111 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00099 * 0.02562 * 7 6 5 9 9 C 1.39185 * 119.93820 * 0.02562 * 6 5 4 10 10 N 1.38979 * 120.31640 * 180.02562 * 9 6 5 11 11 C 1.40792 * 119.97837 * 85.22625 * 3 2 1 12 12 C 1.41071 * 120.28239 * 0.02881 * 11 3 2 13 13 H 1.07999 * 119.99879 * 309.15321 * 12 11 3 14 14 C 1.39908 * 120.00142 * 129.15329 * 12 11 3 15 15 N 1.30888 * 120.00035 * 167.77981 * 14 12 11 16 16 Si 1.86805 * 119.99859 * 347.78666 * 14 12 11 17 17 H 1.48497 * 109.47308 * 94.39421 * 16 14 12 18 18 H 1.48500 * 109.46684 * 214.39049 * 16 14 12 19 19 H 1.48498 * 109.47134 * 334.38849 * 16 14 12 20 20 H 1.09006 * 109.47115 * 300.00139 * 1 2 3 21 21 H 1.09002 * 109.46867 * 59.99646 * 1 2 3 22 22 H 1.09000 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47226 * 240.00678 * 2 1 3 24 24 H 1.09000 * 109.47302 * 119.99719 * 2 1 3 25 25 H 1.07994 * 119.68383 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.71106 * 180.26266 * 5 4 3 27 27 H 1.08998 * 109.47362 * 180.02562 * 8 7 6 28 28 H 1.08996 * 109.46842 * 299.99723 * 8 7 6 29 29 H 1.08997 * 109.47467 * 59.99623 * 8 7 6 30 30 H 0.96999 * 119.99313 * 351.24495 * 10 9 6 31 31 H 0.96999 * 120.00192 * 171.24202 * 10 9 6 32 32 H 0.97000 * 120.00005 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3567 2.0292 -1.1773 5 6 2.8155 3.3400 -1.1937 6 6 2.9565 4.0520 -0.0138 7 8 3.4074 5.3350 -0.0426 8 6 3.7160 5.8855 -1.3247 9 6 2.6376 3.4529 1.2014 10 7 2.7756 4.1601 2.3898 11 6 2.1711 2.1180 1.2153 12 6 1.8423 1.4920 2.4360 13 1 0.8871 1.0014 2.5512 14 6 2.7536 1.5067 3.4975 15 7 2.3693 1.1444 4.6951 16 14 4.5188 2.0437 3.2056 17 1 4.6546 3.4892 3.5176 18 1 5.4259 1.2607 4.0827 19 1 4.8793 1.8081 1.7844 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5137 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.2512 1.4880 -2.1058 26 1 3.0640 3.8084 -2.1346 27 1 4.0641 6.9115 -1.2053 28 1 4.4971 5.2900 -1.7973 29 1 2.8229 5.8748 -1.9494 30 1 3.2128 5.0260 2.3908 31 1 2.4348 3.7878 3.2182 32 1 3.0011 1.1549 5.4311 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575717929.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:03 Heat of formation + Delta-G solvation = -42.237769 kcal Electronic energy + Delta-G solvation = -15427.432459 eV Core-core repulsion = 12965.966121 eV Total energy + Delta-G solvation = -2461.466338 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.85578 -38.62977 -35.99087 -34.83005 -33.40232 -30.99845 -29.27827 -27.87728 -26.53908 -24.05995 -22.40573 -21.15846 -19.60612 -18.43822 -17.40744 -17.06233 -16.55399 -16.32004 -15.76737 -15.15097 -14.97519 -14.56722 -14.18184 -13.79851 -13.63619 -13.55798 -13.06161 -12.85711 -12.58134 -12.30425 -12.05462 -11.79996 -11.51278 -11.43128 -11.30243 -11.01729 -10.64680 -8.88326 -8.56856 -7.89018 -6.26796 0.81438 1.08847 1.37293 1.42177 1.51274 2.25072 2.64541 2.79826 3.38336 3.53153 4.26494 4.35770 4.44704 4.49859 4.55187 4.64641 4.77388 4.79368 4.92939 5.07526 5.14935 5.21393 5.41112 5.49575 5.55877 5.59883 5.83367 6.07043 6.27025 6.40654 6.64629 6.83874 7.01822 7.16692 7.34000 8.50066 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021577 B = 0.015561 C = 0.010245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.346263 B = 1798.934604 C = 2732.414200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.123 4.123 5 C -0.230 4.230 6 C 0.044 3.956 7 O -0.345 6.345 8 C 0.027 3.973 9 C 0.103 3.897 10 N -0.872 5.872 11 C 0.025 3.975 12 C -0.478 4.478 13 H 0.057 0.943 14 C 0.050 3.950 15 N -0.882 5.882 16 Si 0.956 3.044 17 H -0.245 1.245 18 H -0.303 1.303 19 H -0.280 1.280 20 H 0.029 0.971 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.130 0.870 26 H 0.138 0.862 27 H 0.115 0.885 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.394 0.606 31 H 0.395 0.605 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.588 5.077 -10.143 11.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.249 4.249 6 C -0.005 4.005 7 O -0.260 6.260 8 C -0.067 4.067 9 C 0.000 4.000 10 N -0.418 5.418 11 C 0.019 3.981 12 C -0.511 4.511 13 H 0.075 0.925 14 C -0.158 4.158 15 N -0.514 5.514 16 Si 0.784 3.216 17 H -0.170 1.170 18 H -0.231 1.231 19 H -0.206 1.206 20 H 0.049 0.951 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.066 0.934 25 H 0.147 0.853 26 H 0.156 0.844 27 H 0.133 0.867 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.223 0.777 31 H 0.226 0.774 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.623 5.136 -9.793 11.365 hybrid contribution 0.622 0.194 0.502 0.823 sum 3.245 5.329 -9.292 11.192 Atomic orbital electron populations 1.21603 0.95229 1.01240 1.00804 1.20197 0.95957 0.92675 1.01084 1.19953 1.05421 0.96685 0.92769 1.20347 1.02016 0.94713 0.97200 1.20901 1.11270 0.96685 0.96081 1.18462 1.04165 0.84754 0.93069 1.85881 1.81564 1.25336 1.33259 1.23134 1.00491 0.99548 0.83544 1.17771 1.05711 0.91480 0.85015 1.42220 1.68833 1.23336 1.07433 1.17277 0.97252 0.89274 0.94258 1.18743 1.03132 1.34148 0.95123 0.92490 1.26280 1.02522 0.93348 0.93637 1.69752 1.37572 1.43080 1.01008 0.85709 0.78829 0.79372 0.77734 1.16965 1.23141 1.20572 0.95131 0.92380 0.91666 0.90729 0.93381 0.85254 0.84439 0.86660 0.92743 0.92468 0.77746 0.77397 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.89 71.98 0.71 -4.00 16 2 C -0.06 -2.45 5.58 29.85 0.17 -2.28 16 3 C -0.15 -6.53 5.16 -19.66 -0.10 -6.63 16 4 C -0.12 -4.77 9.58 22.00 0.21 -4.56 16 5 C -0.23 -8.68 9.04 22.49 0.20 -8.48 16 6 C 0.04 1.84 6.70 22.57 0.15 1.99 16 7 O -0.35 -12.58 9.76 -93.82 -0.92 -13.50 16 8 C 0.03 0.68 9.81 113.37 1.11 1.79 16 9 C 0.10 4.88 5.27 39.02 0.21 5.08 16 10 N -0.87 -38.79 6.11 -50.06 -0.31 -39.09 16 11 C 0.03 1.26 4.50 -21.18 -0.10 1.17 16 12 C -0.48 -26.36 7.60 23.37 0.18 -26.19 16 13 H 0.06 3.43 7.05 -2.91 -0.02 3.41 16 14 C 0.05 2.74 4.32 85.24 0.37 3.11 16 15 N -0.88 -49.60 13.93 21.82 0.30 -49.30 16 16 Si 0.96 45.76 24.30 68.60 1.67 47.43 16 17 H -0.25 -10.85 6.34 99.48 0.63 -10.22 16 18 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 19 H -0.28 -14.27 7.08 99.48 0.70 -13.57 16 20 H 0.03 1.25 7.14 -2.38 -0.02 1.23 16 21 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.07 2.47 8.04 -2.39 -0.02 2.46 16 24 H 0.05 2.14 7.29 -2.39 -0.02 2.12 16 25 H 0.13 4.11 8.05 -2.91 -0.02 4.09 16 26 H 0.14 4.16 6.26 -2.91 -0.02 4.14 16 27 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 1.25 7.66 -2.39 -0.02 1.24 16 29 H 0.06 1.30 7.66 -2.39 -0.02 1.28 16 30 H 0.39 15.60 8.22 -92.71 -0.76 14.84 16 31 H 0.39 18.54 6.03 -92.71 -0.56 17.98 16 32 H 0.28 14.60 8.30 -92.71 -0.77 13.83 16 Total: -1.00 -61.90 258.21 3.60 -58.30 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: -0.26 Total: 35.17 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 3.11 Total: -39.00 kcal Atomic # 7 Polarization: -88.39 SS G_CDS: 0.00 Total: -88.40 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.92 Total: -13.50 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.67 Total: 47.43 kcal Total: -61.90 3.60 -58.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717929.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.060 kcal (2) G-P(sol) polarization free energy of solvation -61.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds