Wall clock time and date at job start Mon Mar 30 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47050 * 2 1 4 4 C 1.38374 * 119.64637 * 90.00199 * 3 2 1 5 5 C 1.38505 * 120.29894 * 179.97438 * 4 3 2 6 6 N 1.38884 * 120.19477 * 180.02562 * 5 4 3 7 7 C 1.41513 * 119.60560 * 0.02562 * 5 4 3 8 8 C 1.40898 * 120.33915 * 179.72824 * 7 5 4 9 9 H 1.08000 * 119.99956 * 321.49906 * 8 7 5 10 10 C 1.39905 * 120.00315 * 141.51332 * 8 7 5 11 11 N 1.30932 * 119.99825 * 337.85411 * 10 8 7 12 12 Si 1.86803 * 120.00461 * 157.86151 * 10 8 7 13 13 H 1.48500 * 109.46782 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47197 * 119.99135 * 12 10 8 15 15 H 1.48498 * 109.47069 * 239.99772 * 12 10 8 16 16 C 1.41265 * 119.31610 * 359.97438 * 7 5 4 17 17 O 1.35708 * 120.15333 * 180.02562 * 16 7 5 18 18 C 1.42902 * 116.99879 * 180.02562 * 17 16 7 19 19 C 1.38183 * 119.68606 * 359.97438 * 16 7 5 20 20 H 1.09000 * 109.47060 * 59.99564 * 1 2 3 21 21 H 1.08995 * 109.47634 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46914 * 300.00139 * 1 2 3 23 23 H 1.09000 * 109.46914 * 239.99861 * 2 1 3 24 24 H 1.08998 * 109.47198 * 119.99909 * 2 1 3 25 25 H 1.08003 * 119.85612 * 0.02562 * 4 3 2 26 26 H 0.97007 * 119.99752 * 184.16233 * 6 5 4 27 27 H 0.96998 * 120.00478 * 4.16623 * 6 5 4 28 28 H 0.96998 * 119.99870 * 176.21014 * 11 10 8 29 29 H 1.08996 * 109.46823 * 180.02562 * 18 17 16 30 30 H 1.08997 * 109.46970 * 299.99851 * 18 17 16 31 31 H 1.08997 * 109.47217 * 59.99985 * 18 17 16 32 32 H 1.07998 * 119.80441 * 180.02562 * 19 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2605 2.0661 1.2026 5 6 2.7227 3.3717 1.2184 6 7 2.9515 4.0171 2.4267 7 6 2.9603 4.0440 -0.0040 8 6 3.4250 5.3742 -0.0060 9 1 3.0523 6.0775 0.7240 10 6 4.3690 5.7840 -0.9537 11 7 5.1354 4.8987 -1.5395 12 14 4.5363 7.5942 -1.3832 13 1 3.5617 8.3837 -0.5882 14 1 5.9146 8.0513 -1.0727 15 1 4.2651 7.7867 -2.8305 16 6 2.7218 3.3695 -1.2221 17 8 2.9445 3.9979 -2.4041 18 6 2.6804 3.2529 -3.5947 19 6 2.2618 2.0667 -1.2042 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 2.0782 1.5492 2.1332 26 1 3.2170 4.9501 2.4355 27 1 2.8458 3.5351 3.2617 28 1 5.7513 5.1754 -2.2359 29 1 2.8997 3.8703 -4.4657 30 1 3.3091 2.3628 -3.6132 31 1 1.6314 2.9573 -3.6132 32 1 2.0792 1.5491 -2.1344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718209.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:51 Heat of formation + Delta-G solvation = -44.674779 kcal Electronic energy + Delta-G solvation = -15265.257706 eV Core-core repulsion = 12803.685691 eV Total energy + Delta-G solvation = -2461.572015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40948 -38.18921 -36.08334 -34.75826 -32.83820 -30.59100 -28.92107 -27.93105 -26.58075 -23.92424 -22.19872 -21.34248 -19.12839 -17.90080 -17.71395 -16.67444 -16.00379 -15.92171 -15.76294 -15.46718 -14.74092 -14.53025 -13.95761 -13.67663 -13.53498 -13.04173 -12.86083 -12.73193 -12.37568 -12.32613 -11.94828 -11.87043 -11.84178 -11.59822 -11.07472 -10.60540 -10.38817 -8.63860 -8.29404 -7.99046 -5.88912 1.10437 1.34708 1.43380 1.50953 1.55018 2.38440 2.96582 3.08753 3.69749 3.77626 4.25197 4.38665 4.51051 4.54783 4.63125 4.72358 4.78410 4.81649 4.98303 5.09358 5.14499 5.30119 5.46480 5.49813 5.55079 5.74999 6.00530 6.27110 6.34855 6.55097 6.87084 7.17659 7.19797 7.53473 7.56868 8.69626 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032100 B = 0.010701 C = 0.008545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.052586 B = 2615.913333 C = 3276.057133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.065 4.065 3 C -0.103 4.103 4 C -0.221 4.221 5 C 0.149 3.851 6 N -0.868 5.868 7 C -0.008 4.008 8 C -0.506 4.506 9 H 0.063 0.937 10 C 0.055 3.945 11 N -0.821 5.821 12 Si 0.953 3.047 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.277 1.277 16 C 0.084 3.916 17 O -0.308 6.308 18 C 0.030 3.970 19 C -0.247 4.247 20 H 0.043 0.957 21 H 0.073 0.927 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.394 0.606 27 H 0.395 0.605 28 H 0.272 0.728 29 H 0.096 0.904 30 H 0.039 0.961 31 H 0.049 0.951 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.931 -4.896 0.640 6.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.103 4.103 3 C -0.105 4.105 4 C -0.244 4.244 5 C 0.045 3.955 6 N -0.410 5.410 7 C -0.013 4.013 8 C -0.538 4.538 9 H 0.081 0.919 10 C -0.158 4.158 11 N -0.449 5.449 12 Si 0.777 3.223 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.202 1.202 16 C 0.036 3.964 17 O -0.221 6.221 18 C -0.066 4.066 19 C -0.268 4.268 20 H 0.062 0.938 21 H 0.092 0.908 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.133 0.867 26 H 0.222 0.778 27 H 0.224 0.776 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.656 -4.756 0.437 6.670 hybrid contribution 0.379 0.864 -0.255 0.978 sum -4.276 -3.892 0.182 5.785 Atomic orbital electron populations 1.21678 0.94507 1.01777 1.01345 1.20329 0.96347 0.91710 1.01891 1.19235 1.03107 0.96621 0.91530 1.20123 1.12388 0.94402 0.97474 1.17904 0.99106 0.91763 0.86689 1.41821 1.80607 1.14591 1.03979 1.16797 1.01109 0.95164 0.88220 1.18860 1.22526 0.95569 1.16806 0.91857 1.26088 0.93006 1.01761 0.94963 1.69870 1.16884 1.37592 1.20565 0.85622 0.78044 0.80176 0.78469 1.18842 1.20124 1.20219 1.19195 0.99301 0.92304 0.85558 1.86135 1.82903 1.40745 1.12280 1.22913 0.99734 0.97052 0.86929 1.20640 1.13072 0.94920 0.98124 0.93781 0.90838 0.93307 0.91880 0.91177 0.86742 0.77779 0.77615 0.91766 0.88588 0.94190 0.93205 0.87270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.89 71.98 0.71 -2.98 16 2 C -0.07 -2.07 6.05 29.85 0.18 -1.89 16 3 C -0.10 -4.32 5.14 -19.75 -0.10 -4.43 16 4 C -0.22 -9.52 9.50 22.37 0.21 -9.30 16 5 C 0.15 7.17 6.78 38.90 0.26 7.43 16 6 N -0.87 -34.73 8.98 -50.47 -0.45 -35.19 16 7 C -0.01 -0.41 5.38 -21.08 -0.11 -0.53 16 8 C -0.51 -28.12 8.04 23.33 0.19 -27.93 16 9 H 0.06 3.41 7.19 -2.91 -0.02 3.38 16 10 C 0.06 2.98 4.33 85.23 0.37 3.35 16 11 N -0.82 -46.12 11.39 21.83 0.25 -45.87 16 12 Si 0.95 41.98 29.62 68.60 2.03 44.01 16 13 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 14 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 C 0.08 4.42 6.19 23.00 0.14 4.56 16 17 O -0.31 -15.88 7.45 -90.29 -0.67 -16.55 16 18 C 0.03 1.15 9.81 113.37 1.11 2.27 16 19 C -0.25 -11.40 8.66 22.33 0.19 -11.21 16 20 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 21 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.06 1.89 8.08 -2.39 -0.02 1.87 16 24 H 0.07 2.02 8.08 -2.39 -0.02 2.00 16 25 H 0.11 4.24 8.06 -2.91 -0.02 4.22 16 26 H 0.39 15.87 7.29 -92.70 -0.68 15.20 16 27 H 0.40 12.77 8.84 -92.71 -0.82 11.95 16 28 H 0.27 14.25 8.30 -92.71 -0.77 13.48 16 29 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 30 H 0.04 1.51 7.66 -2.39 -0.02 1.49 16 31 H 0.05 1.74 7.66 -2.39 -0.02 1.72 16 32 H 0.11 4.52 6.27 -2.91 -0.02 4.50 16 Total: -1.00 -64.07 268.52 3.95 -60.11 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.36 Total: 34.14 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 3.16 Total: -40.66 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -0.20 Total: -81.06 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.67 Total: -16.55 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -64.07 3.95 -60.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718209.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.436 kcal (2) G-P(sol) polarization free energy of solvation -64.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds