Wall clock time and date at job start Mon Mar 30 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47287 * 2 1 4 4 C 1.36260 * 119.99805 * 264.98415 * 3 2 1 5 5 C 1.39678 * 120.43229 * 180.02562 * 4 3 2 6 6 N 1.38926 * 119.80129 * 179.97438 * 5 4 3 7 7 C 1.39264 * 120.40386 * 0.02562 * 5 4 3 8 8 C 1.37998 * 119.97945 * 359.95477 * 7 5 4 9 9 O 1.35670 * 120.21108 * 180.02562 * 8 7 5 10 10 C 1.42897 * 116.99894 * 359.97438 * 9 8 7 11 11 C 1.40825 * 119.99559 * 84.99941 * 3 2 1 12 12 C 1.40973 * 120.19938 * 359.70553 * 11 3 2 13 13 H 1.08001 * 119.99578 * 321.28054 * 12 11 3 14 14 C 1.39835 * 119.99843 * 141.28213 * 12 11 3 15 15 N 1.30950 * 120.00119 * 339.67952 * 14 12 11 16 16 Si 1.86803 * 119.99820 * 159.68810 * 14 12 11 17 17 H 1.48498 * 109.47475 * 89.99436 * 16 14 12 18 18 H 1.48505 * 109.46923 * 210.00008 * 16 14 12 19 19 H 1.48506 * 109.47066 * 329.99192 * 16 14 12 20 20 H 1.08995 * 109.47093 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47297 * 300.00413 * 1 2 3 22 22 H 1.09005 * 109.47517 * 59.99827 * 1 2 3 23 23 H 1.08998 * 109.47075 * 240.00478 * 2 1 3 24 24 H 1.08998 * 109.47145 * 120.00191 * 2 1 3 25 25 H 1.07997 * 119.78749 * 359.97438 * 4 3 2 26 26 H 0.96998 * 119.99811 * 0.02562 * 6 5 4 27 27 H 0.96994 * 119.99923 * 179.97438 * 6 5 4 28 28 H 1.07996 * 120.00710 * 179.97438 * 7 5 4 29 29 H 1.09000 * 109.47494 * 299.99669 * 10 9 8 30 30 H 1.08998 * 109.47287 * 60.00287 * 10 9 8 31 31 H 1.09008 * 109.47063 * 180.02562 * 10 9 8 32 32 H 0.97000 * 120.00151 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3567 2.0287 -1.1756 5 6 2.8237 3.3451 -1.1860 6 7 3.1511 3.9519 -2.3921 7 6 2.9642 4.0526 0.0052 8 6 2.6402 3.4535 1.2054 9 8 2.7747 4.1386 2.3686 10 6 3.2589 5.4800 2.2792 11 6 2.1668 2.1200 1.2150 12 6 1.8268 1.4970 2.4330 13 1 0.9650 0.8482 2.4855 14 6 2.6054 1.7192 3.5732 15 7 3.8342 2.1553 3.4522 16 14 1.8925 1.3937 5.2689 17 1 2.1663 -0.0126 5.6594 18 1 2.5189 2.3120 6.2537 19 1 0.4256 1.6232 5.2416 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.2529 1.4890 -2.1052 26 1 3.0548 3.4617 -3.2235 27 1 3.4754 4.8660 -2.4028 28 1 3.3262 5.0699 -0.0103 29 1 4.2492 5.4793 1.8237 30 1 2.5781 6.0721 1.6677 31 1 3.3194 5.9118 3.2783 32 1 4.3744 2.3091 4.2430 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:16 Heat of formation + Delta-G solvation = -23.026475 kcal Electronic energy + Delta-G solvation = -15368.654884 eV Core-core repulsion = 12908.021610 eV Total energy + Delta-G solvation = -2460.633274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.67511 -36.47585 -34.50086 -32.78905 -31.16678 -28.44744 -27.88602 -26.29488 -24.16446 -22.45923 -20.70113 -19.32519 -17.15031 -16.50007 -15.81423 -14.90221 -14.34164 -14.22482 -14.09123 -13.74849 -13.09915 -12.84405 -12.24621 -11.85554 -11.74322 -11.33013 -11.07137 -10.98808 -10.75302 -10.60286 -10.38441 -10.21274 -10.00784 -9.70089 -9.25923 -8.85398 -8.27751 -6.97121 -6.48040 -6.15650 -3.86473 2.94114 3.10555 3.28076 3.32908 3.39767 4.25985 4.74898 4.94479 4.95921 5.66345 5.95068 5.99703 6.06337 6.08676 6.18630 6.31112 6.41999 6.46013 6.68312 6.81711 6.93026 7.04714 7.16553 7.18840 7.47496 7.54905 7.80326 8.08577 8.18582 8.57653 8.71382 8.77086 8.83308 9.25299 9.37907 10.63670 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.013449 C = 0.009242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.374766 B = 2081.486367 C = 3028.833920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.057 4.057 3 C -0.115 4.115 4 C -0.193 4.193 5 C 0.138 3.862 6 N -0.895 5.895 7 C -0.263 4.263 8 C 0.116 3.884 9 O -0.274 6.274 10 C 0.034 3.966 11 C 0.068 3.932 12 C -0.474 4.474 13 H 0.074 0.926 14 C 0.091 3.909 15 N -0.789 5.789 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.266 1.266 20 H 0.038 0.962 21 H 0.059 0.941 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.383 0.617 27 H 0.381 0.619 28 H 0.095 0.905 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 2.346 -4.108 4.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 C -0.118 4.118 4 C -0.216 4.216 5 C 0.038 3.962 6 N -0.437 5.437 7 C -0.286 4.286 8 C 0.070 3.930 9 O -0.185 6.185 10 C -0.063 4.063 11 C 0.064 3.936 12 C -0.505 4.505 13 H 0.092 0.908 14 C -0.125 4.125 15 N -0.415 5.415 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.190 1.190 20 H 0.057 0.943 21 H 0.078 0.922 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.209 0.791 27 H 0.207 0.793 28 H 0.113 0.887 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.289 2.293 -3.671 4.516 hybrid contribution 0.121 0.491 0.321 0.599 sum -1.168 2.784 -3.350 4.509 Atomic orbital electron populations 1.21710 0.96837 0.99583 1.01630 1.20113 0.94437 0.94224 1.00712 1.19042 1.05818 0.94775 0.92118 1.19611 1.11191 0.93990 0.96817 1.17023 1.01529 0.92557 0.85089 1.41876 1.79634 1.16555 1.05598 1.20187 1.16601 0.99786 0.92069 1.19060 0.99879 0.91484 0.82609 1.86253 1.80139 1.23189 1.28967 1.22691 0.97705 0.84787 1.01142 1.16617 0.95874 0.88268 0.92793 1.18920 1.11398 1.27294 0.92879 0.90792 1.25510 0.93828 0.93226 0.99976 1.69786 1.06560 1.34075 1.31079 0.86620 0.80535 0.78150 0.83019 1.20316 1.20726 1.18995 0.94285 0.92212 0.93907 0.93897 0.91057 0.89440 0.79122 0.79323 0.88721 0.94422 0.94904 0.90606 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.82 37.16 0.36 -2.24 16 2 C -0.06 -1.21 5.45 -27.88 -0.15 -1.36 16 3 C -0.12 -2.79 5.15 -104.36 -0.54 -3.33 16 4 C -0.19 -4.36 9.42 -39.76 -0.37 -4.74 16 5 C 0.14 3.02 6.76 -83.73 -0.57 2.46 16 6 N -0.89 -15.26 9.05 32.48 0.29 -14.96 16 7 C -0.26 -6.16 8.86 -39.29 -0.35 -6.51 16 8 C 0.12 3.03 6.17 -38.43 -0.24 2.79 16 9 O -0.27 -6.93 7.39 -18.71 -0.14 -7.07 16 10 C 0.03 0.66 9.81 101.05 0.99 1.65 16 11 C 0.07 1.82 5.36 -106.64 -0.57 1.25 16 12 C -0.47 -12.84 7.61 -37.95 -0.29 -13.13 16 13 H 0.07 1.94 6.44 -52.49 -0.34 1.60 16 14 C 0.09 2.42 4.39 -17.33 -0.08 2.34 16 15 N -0.79 -21.60 11.26 55.54 0.63 -20.97 16 16 Si 0.89 20.11 29.61 -169.99 -5.03 15.08 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 21 H 0.06 1.19 7.08 -51.93 -0.37 0.82 16 22 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.04 0.81 8.04 -51.93 -0.42 0.39 16 24 H 0.07 1.58 7.26 -51.93 -0.38 1.20 16 25 H 0.09 1.77 8.05 -52.49 -0.42 1.35 16 26 H 0.38 5.64 8.83 -40.82 -0.36 5.28 16 27 H 0.38 5.70 8.83 -40.82 -0.36 5.34 16 28 H 0.09 2.00 6.29 -52.49 -0.33 1.67 16 29 H 0.04 0.72 7.66 -51.93 -0.40 0.32 16 30 H 0.03 0.58 7.66 -51.93 -0.40 0.19 16 31 H 0.08 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.27 6.92 8.30 -40.82 -0.34 6.59 16 LS Contribution 266.29 15.07 4.01 4.01 Total: -1.00 -29.57 266.29 -6.21 -35.78 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.17 Total: 8.95 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -1.80 Total: -20.81 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.92 Total: -35.93 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.14 Total: -7.07 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.57 -6.21 -35.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.749 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds