Wall clock time and date at job start Mon Mar 30 2020 02:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47287 * 2 1 4 4 C 1.36260 * 119.99805 * 264.98415 * 3 2 1 5 5 C 1.39678 * 120.43229 * 180.02562 * 4 3 2 6 6 N 1.38926 * 119.80129 * 179.97438 * 5 4 3 7 7 C 1.39264 * 120.40386 * 0.02562 * 5 4 3 8 8 C 1.37998 * 119.97945 * 359.95477 * 7 5 4 9 9 O 1.35670 * 120.21108 * 180.02562 * 8 7 5 10 10 C 1.42897 * 116.99894 * 359.97438 * 9 8 7 11 11 C 1.40825 * 119.99559 * 84.99941 * 3 2 1 12 12 C 1.40973 * 120.19938 * 359.70553 * 11 3 2 13 13 H 1.08001 * 119.99578 * 321.28054 * 12 11 3 14 14 C 1.39835 * 119.99843 * 141.28213 * 12 11 3 15 15 N 1.30950 * 120.00119 * 339.67952 * 14 12 11 16 16 Si 1.86803 * 119.99820 * 159.68810 * 14 12 11 17 17 H 1.48498 * 109.47475 * 89.99436 * 16 14 12 18 18 H 1.48505 * 109.46923 * 210.00008 * 16 14 12 19 19 H 1.48506 * 109.47066 * 329.99192 * 16 14 12 20 20 H 1.08995 * 109.47093 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47297 * 300.00413 * 1 2 3 22 22 H 1.09005 * 109.47517 * 59.99827 * 1 2 3 23 23 H 1.08998 * 109.47075 * 240.00478 * 2 1 3 24 24 H 1.08998 * 109.47145 * 120.00191 * 2 1 3 25 25 H 1.07997 * 119.78749 * 359.97438 * 4 3 2 26 26 H 0.96998 * 119.99811 * 0.02562 * 6 5 4 27 27 H 0.96994 * 119.99923 * 179.97438 * 6 5 4 28 28 H 1.07996 * 120.00710 * 179.97438 * 7 5 4 29 29 H 1.09000 * 109.47494 * 299.99669 * 10 9 8 30 30 H 1.08998 * 109.47287 * 60.00287 * 10 9 8 31 31 H 1.09008 * 109.47063 * 180.02562 * 10 9 8 32 32 H 0.97000 * 120.00151 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3567 2.0287 -1.1756 5 6 2.8237 3.3451 -1.1860 6 7 3.1511 3.9519 -2.3921 7 6 2.9642 4.0526 0.0052 8 6 2.6402 3.4535 1.2054 9 8 2.7747 4.1386 2.3686 10 6 3.2589 5.4800 2.2792 11 6 2.1668 2.1200 1.2150 12 6 1.8268 1.4970 2.4330 13 1 0.9650 0.8482 2.4855 14 6 2.6054 1.7192 3.5732 15 7 3.8342 2.1553 3.4522 16 14 1.8925 1.3937 5.2689 17 1 2.1663 -0.0126 5.6594 18 1 2.5189 2.3120 6.2537 19 1 0.4256 1.6232 5.2416 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.2529 1.4890 -2.1052 26 1 3.0548 3.4617 -3.2235 27 1 3.4754 4.8660 -2.4028 28 1 3.3262 5.0699 -0.0103 29 1 4.2492 5.4793 1.8237 30 1 2.5781 6.0721 1.6677 31 1 3.3194 5.9118 3.2783 32 1 4.3744 2.3091 4.2430 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:16 Heat of formation + Delta-G solvation = -41.811159 kcal Electronic energy + Delta-G solvation = -15369.469449 eV Core-core repulsion = 12908.021610 eV Total energy + Delta-G solvation = -2461.447839 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45782 -38.23105 -36.20496 -34.61894 -32.83022 -30.22786 -29.61319 -27.93766 -25.97063 -24.13619 -22.50461 -21.04929 -19.04538 -18.18538 -17.48120 -16.74110 -16.04299 -15.89758 -15.77240 -15.50324 -14.70835 -14.50231 -14.00865 -13.53715 -13.41680 -13.04928 -12.83779 -12.69302 -12.48597 -12.33457 -12.08195 -11.89816 -11.68639 -11.41057 -11.04615 -10.71820 -10.02493 -8.75543 -8.38418 -7.95478 -5.81025 1.11647 1.28702 1.44545 1.54373 1.59735 2.40878 3.02482 3.11476 3.48027 3.79749 4.33250 4.47174 4.48338 4.53079 4.57498 4.74737 4.80637 4.86419 5.07368 5.11513 5.31334 5.37619 5.44103 5.52114 5.65379 5.78439 6.01221 6.24117 6.39787 6.74710 6.94548 7.02958 7.31689 7.39965 7.55498 8.74384 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.013449 C = 0.009242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.374766 B = 2081.486367 C = 3028.833920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 C -0.116 4.116 4 C -0.212 4.212 5 C 0.155 3.845 6 N -0.876 5.876 7 C -0.282 4.282 8 C 0.099 3.901 9 O -0.303 6.303 10 C 0.028 3.972 11 C 0.017 3.983 12 C -0.499 4.499 13 H 0.066 0.934 14 C 0.052 3.948 15 N -0.826 5.826 16 Si 0.950 3.050 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.268 1.268 20 H 0.067 0.933 21 H 0.037 0.963 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.114 0.886 26 H 0.399 0.601 27 H 0.395 0.605 28 H 0.114 0.886 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.734 2.645 -5.523 6.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.096 4.096 3 C -0.118 4.118 4 C -0.235 4.235 5 C 0.053 3.947 6 N -0.419 5.419 7 C -0.305 4.305 8 C 0.052 3.948 9 O -0.215 6.215 10 C -0.067 4.067 11 C 0.014 3.986 12 C -0.531 4.531 13 H 0.084 0.916 14 C -0.161 4.161 15 N -0.454 5.454 16 Si 0.775 3.225 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.192 1.192 20 H 0.086 0.914 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.132 0.868 26 H 0.227 0.773 27 H 0.223 0.777 28 H 0.132 0.868 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.115 0.885 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.589 2.609 -5.134 5.974 hybrid contribution 0.233 0.475 0.531 0.750 sum -1.356 3.084 -4.603 5.704 Atomic orbital electron populations 1.21611 0.94933 1.01319 1.00986 1.20158 0.96075 0.92562 1.00757 1.19525 1.04180 0.96060 0.92042 1.19912 1.11597 0.94637 0.97359 1.17235 0.98872 0.92347 0.86255 1.41786 1.78170 1.17252 1.04666 1.20411 1.17337 1.00914 0.91850 1.19340 1.00096 0.91739 0.83634 1.86186 1.80512 1.25404 1.29418 1.22926 0.97977 0.82885 1.02959 1.17026 0.98430 0.89388 0.93751 1.19030 1.11638 1.28343 0.94102 0.91563 1.26123 0.93907 0.93150 1.02893 1.69855 1.07516 1.36354 1.31670 0.85703 0.79462 0.78253 0.79125 1.19546 1.20318 1.19204 0.91368 0.94414 0.92895 0.91598 0.93109 0.86757 0.77292 0.77717 0.86794 0.94217 0.93201 0.88529 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 9.82 71.98 0.71 -4.00 16 2 C -0.06 -2.40 5.45 29.85 0.16 -2.23 16 3 C -0.12 -5.57 5.15 -19.69 -0.10 -5.67 16 4 C -0.21 -9.15 9.42 22.16 0.21 -8.94 16 5 C 0.16 6.45 6.76 38.61 0.26 6.72 16 6 N -0.88 -26.70 9.05 -51.14 -0.46 -27.16 16 7 C -0.28 -12.85 8.86 22.46 0.20 -12.66 16 8 C 0.10 5.19 6.17 23.02 0.14 5.33 16 9 O -0.30 -15.53 7.39 -89.87 -0.66 -16.20 16 10 C 0.03 1.09 9.81 113.37 1.11 2.21 16 11 C 0.02 0.94 5.36 -21.17 -0.11 0.83 16 12 C -0.50 -27.94 7.61 23.33 0.18 -27.76 16 13 H 0.07 3.63 6.44 -2.91 -0.02 3.61 16 14 C 0.05 2.82 4.39 85.21 0.37 3.20 16 15 N -0.83 -46.50 11.26 21.81 0.25 -46.25 16 16 Si 0.95 42.34 29.61 68.60 2.03 44.37 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.04 1.50 7.08 -2.39 -0.02 1.48 16 22 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 23 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 24 H 0.05 2.28 7.26 -2.39 -0.02 2.26 16 25 H 0.11 4.23 8.05 -2.91 -0.02 4.21 16 26 H 0.40 10.08 8.83 -92.71 -0.82 9.27 16 27 H 0.40 10.32 8.83 -92.71 -0.82 9.51 16 28 H 0.11 4.60 6.29 -2.91 -0.02 4.58 16 29 H 0.04 1.48 7.66 -2.39 -0.02 1.46 16 30 H 0.05 1.71 7.66 -2.39 -0.02 1.70 16 31 H 0.10 3.23 8.14 -2.38 -0.02 3.21 16 32 H 0.27 14.27 8.30 -92.71 -0.77 13.50 16 Total: -1.00 -64.44 266.29 3.79 -60.65 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -0.49 Total: 27.57 kcal Atomic # 6 Polarization: -46.11 SS G_CDS: 3.13 Total: -42.98 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -0.22 Total: -73.42 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.66 Total: -16.20 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -64.44 3.79 -60.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.840 kcal (2) G-P(sol) polarization free energy of solvation -64.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds